Cp4.1LG04g15010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g15010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG04: 11834129 .. 11834849 (+)
RNA-Seq ExpressionCp4.1LG04g15010
SyntenyCp4.1LG04g15010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAAAACAGCAGGCAACCTGTTTGATGAAATTCCCAAACCAGATTTAGTGGCTTGGAATATAGCCATTCGACTGTCATGTCTCTCTTATGGGCTGTGTACAACGAAGCACTTGCTTGTTTTCAAATGTTGAGCGGAGTGGCTGGAGACCGATGAAACCATACTAGTTGTGACTGTCTTGCCATGCTCTGCGCTTCATTGATCGACATGTACGCCAAGTGTGGGGCAGTCGAAGACACGCACAGGATGCAGAGTATGGAACACAATGATGATGGCATTTGCAACGCATGGTGATGCAGAGGATGCACCGACACTATTCTCAAAGATGTTAAGAGAGAAGCTTGAGACTCCTGATGTTGCAACTTTCTTGGGAGTATTGTGAGCTTGTATAGCAACTGAGGAAAGGTGGAGGAACGGAGGAGGCATTTTGATCTTATGGCCAAACACTGAATATCCAACCCACGCTTAAGCAATATGGATCCACAGTGGATATTCAGGGACGAGCTGGGTTTATTGAACAAGCTTATTAGCTGATAAGAAGCATGCCAATTGAGTGCAGTGATATTATATGGAGAACATTACTCGCTGCCTGTTGGATGCAGAGAAACGTTGTATTTGGGGAGAGAGTAAGGAGCCATGGTCTGGAGATAGAGCCAGATCATAATAGTAATTATGTTCTTGCAAATATGTATGCAATGAAAAGGAGTATGGAAACCATAGCC

mRNA sequence

ATCAAAACAGCAGGCAACCTGTTTGATGAAATTCCCAAACCAGATTTAGTGGCTTGGAATATAGCCATTCGACTGTCATGTCTCTCTTATGGGCTGTGTACAACGAAGCACTTGCTTTCGAAGACACGCACAGGATGCAGAGTATGGAACACAATGATGATGGCATTTGCAACGCATGGTGATGCAGAGGATGCACCGACACTATTCTCAAAGATGTTAAGAGAGAAGCTTGAGACTCCTGATGTTGCAACTTTCTTGGGAGTATTAAGCATGCCAATTGAGTGCAGTGATATTATATGGAGAACATTACTCGCTGCCTGTTGGATGCAGAGAAACGTTGTATTTGGGGAGAGAGTAAGGAGCCATGGTCTGGAGATAGAGCCAGATCATAATAGTAATTATGTTCTTGCAAATATGTATGCAATGAAAAGGAGTATGGAAACCATAGCC

Coding sequence (CDS)

ATCAAAACAGCAGGCAACCTGTTTGATGAAATTCCCAAACCAGATTTAGTGGCTTGGAATATAGCCATTCGACTGTCATGTCTCTCTTATGGGCTGTGTACAACGAAGCACTTGCTTTCGAAGACACGCACAGGATGCAGAGTATGGAACACAATGATGATGGCATTTGCAACGCATGGTGATGCAGAGGATGCACCGACACTATTCTCAAAGATGTTAAGAGAGAAGCTTGAGACTCCTGATGTTGCAACTTTCTTGGGAGTATTAAGCATGCCAATTGAGTGCAGTGATATTATATGGAGAACATTACTCGCTGCCTGTTGGATGCAGAGAAACGTTGTATTTGGGGAGAGAGTAAGGAGCCATGGTCTGGAGATAGAGCCAGATCATAATAGTAATTATGTTCTTGCAAATATGTATGCAATGAAAAGGAGTATGGAAACCATAGCC

Protein sequence

IKTAGNLFDEIPKPDLVAWNIAIRLSCLSYGLCTTKHLLSKTRTGCRVWNTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVLSMPIECSDIIWRTLLAACWMQRNVVFGERVRSHGLEIEPDHNSNYVLANMYAMKRSMETIA
Homology
BLAST of Cp4.1LG04g15010 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 47/173 (27.17%), Postives = 71/173 (41.04%), Query Frame = 0

Query: 23  IRLSCLSYGLCTTKHLLSKTRTGCRVWNTMMMAFATHGDAEDAPTLFSKMLREKLETPDV 82
           ++  C+  G    + ++ +    C  WN M++ FA +G   +A  LF +ML E  E PD 
Sbjct: 438 VKCGCVEEGYLVFRKMMER---DCVSWNAMIIGFAQNGYGNEALELFREML-ESGEKPDH 497

Query: 83  ATFLGVLS---------------------------------------------------- 142
            T +GVLS                                                    
Sbjct: 498 ITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIE 557

BLAST of Cp4.1LG04g15010 vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 47/185 (25.41%), Postives = 78/185 (42.16%), Query Frame = 0

Query: 20  NIAIRLSCLSYGLCTTKHLLSK-TRTGCRVWNTMMMAFATHGDAEDAPTLFSKMLREKLE 79
           N  I +     GL  T+ +  K  R     W++M+ A + HG+A DA +LF++M +E +E
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442

Query: 80  TPDVATFLGVL------------------------------------------------- 139
            P+  TF+GVL                                                 
Sbjct: 443 -PNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREAL 502

Query: 140 ----SMPIECSDIIWRTLLAACWMQRNVVFGERVRSHGLEIEPDHNSNYVL-ANMYAMKR 150
               SMP+  + +IW +L++AC +   +  G+      LE+EPDH+   VL +N+YA ++
Sbjct: 503 EVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQ 562

BLAST of Cp4.1LG04g15010 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08
Identity = 44/173 (25.43%), Postives = 81/173 (46.82%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAIRLSCLSYGL-----CTTKHLLSKTRTGCRVWNTMMMA 60
           I+ A ++F+ +P+ +++ W+  I    +         C  K   +  R     +  ++ A
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384

Query: 61  FATHGDAEDAPTLFSKMLREKLETPDVATF------LG-----------VLSMPIECSDI 120
            +  G  E+    FS+M+      P +  +      LG           +L+MPI+  D+
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDV 444

Query: 121 IWRTLLAACWMQRNVVFGERVRSHGLEIEPDHNSNYV-LANMYAMKRSMETIA 151
           IW+ LL AC MQ NV  G+RV +  +++ P  +  YV L+NMYA + +   ++
Sbjct: 445 IWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497

BLAST of Cp4.1LG04g15010 vs. ExPASy Swiss-Prot
Match: Q8LK93 (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-08
Identity = 39/157 (24.84%), Postives = 64/157 (40.76%), Query Frame = 0

Query: 47  RVWNTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVLS---------------- 106
           + W+ M++A+A HG AE +  +F +M  E ++ PD  TFLG+L+                
Sbjct: 297 QAWSAMIVAYANHGKAEKSMLMFERMRSENVQ-PDEITFLGLLNACSHTGRVEEGRKYFS 356

Query: 107 -------------------------------------MPIECSDIIWRTLLAACWMQRNV 150
                                                +PI  + ++WR LLAAC    N+
Sbjct: 357 QMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNL 416

BLAST of Cp4.1LG04g15010 vs. ExPASy Swiss-Prot
Match: Q9LS72 (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 49/204 (24.02%), Postives = 75/204 (36.76%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAIRLSCLSYGLCTTKHLLSKTRTGCRVWNTMMMAFATHG 60
           +K A ++F++IPK DLV+                              WNTM+     HG
Sbjct: 366 LKKAFDVFNDIPKKDLVS------------------------------WNTMLHGLGVHG 425

Query: 61  DAEDAPTLFSKMLREKLETPDVATFLGVL------------------------------- 120
             ++A  LFS+M RE +  PD  TF+ VL                               
Sbjct: 426 HGKEAIELFSRMRREGIR-PDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEH 485

Query: 121 ----------------------SMPIECSDIIWRTLLAACWMQRNVVFGERVRSHGLEIE 151
                                 +MP+E + +IW  LL AC M   V   + V  + ++++
Sbjct: 486 YGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLD 538

BLAST of Cp4.1LG04g15010 vs. NCBI nr
Match: XP_022135209.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like [Momordica charantia])

HSP 1 Score: 128 bits (322), Expect = 1.72e-31
Identity = 98/266 (36.84%), Postives = 110/266 (41.35%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAI--RLSCLSY-------------GLCTTKHLLSKTRTG 60
           IKTA NLF E+PKPDLVAWN  I   +SC  Y             G+   +  L  T + 
Sbjct: 209 IKTARNLFVEMPKPDLVAWNTVIDCHVSCGMYEEALGLFFRMFQSGIEPDEATLVVTVSA 268

Query: 61  CRV--------------------------------------------------------W 120
           C                                                          W
Sbjct: 269 CSALGALDSGRWVHSHVKHNDRGKTVAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTW 328

Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
           NTM+MA ATHGDAEDA TLFSKML EKLE PD  TFLGVL                    
Sbjct: 329 NTMIMALATHGDAEDALTLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMT 388

BLAST of Cp4.1LG04g15010 vs. NCBI nr
Match: XP_038880037.1 (pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida])

HSP 1 Score: 125 bits (315), Expect = 1.24e-30
Identity = 95/266 (35.71%), Postives = 109/266 (40.98%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAI--RLSCLSY-------------GLCTTKHLLSKTRTG 60
           +K A NLFDE+PKPDLVAWN  I   +SC  Y             G+   +  L  T + 
Sbjct: 206 VKIARNLFDEMPKPDLVAWNAVIDCHVSCGMYSEALGLFLQMLQSGVEPDEATLVVTVSA 265

Query: 61  CRV--------------------------------------------------------W 120
           C                                                          W
Sbjct: 266 CSALGALDFGRWVHSHVKRNDKGKTIAVLNSLIDMYAKCGAVEDAREMFNAMSDKNVVTW 325

Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
           NTM+M  ATHGDAEDA TLFS ML +K+ETPD  TFLGVL                    
Sbjct: 326 NTMIMGLATHGDAEDALTLFSNMLAKKVETPDGVTFLGVLCACNHGGKVEEGREYFHLMT 385

BLAST of Cp4.1LG04g15010 vs. NCBI nr
Match: XP_008453215.2 (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucumis melo] >KAA0057953.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 4.46e-29
Identity = 94/266 (35.34%), Postives = 107/266 (40.23%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAI--RLSC------------------------------- 60
           +  A NLFDE+PK DLVAWN  I   +SC                               
Sbjct: 206 VNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFLQMLQSGVEPDEATLVVTVSA 265

Query: 61  ------LSYGLCTTKHLLSKTR------------------------------TGCRV--W 120
                 L +G     H+ S  R                              +G  V  W
Sbjct: 266 CSALGALDFGRWIHSHVNSNDRGKTTAVFNSLIDMYAKCGAVDYAREMFNAMSGKNVVTW 325

Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
           NTM+M  ATHGDAEDA TLFS ML EK+ETPD  TFL VL                    
Sbjct: 326 NTMIMGLATHGDAEDALTLFSNMLTEKVETPDAVTFLAVLCACNHGGKVEEGRRYFDLMT 385

BLAST of Cp4.1LG04g15010 vs. NCBI nr
Match: KAG6589516.1 (Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120 bits (300), Expect = 1.86e-28
Identity = 92/266 (34.59%), Postives = 107/266 (40.23%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAI--RLSC------------------------------- 60
           +K A NLFDE+PKP LVAWN  I   +SC                               
Sbjct: 206 VKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSA 265

Query: 61  ------LSYGLCTTKHLLSKTR------------------------------TGCRV--W 120
                 L +G     H+    R                              +G  +  W
Sbjct: 266 CSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTW 325

Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
           NTM+M  ATHGD EDA TLFS ML EK+ TPD  TFLGVL                    
Sbjct: 326 NTMIMGLATHGDVEDALTLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMT 385

BLAST of Cp4.1LG04g15010 vs. NCBI nr
Match: XP_022921850.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 120 bits (300), Expect = 1.86e-28
Identity = 91/266 (34.21%), Postives = 106/266 (39.85%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWN---------------IAIRLSCLSYGLCTTKHLLSKTRTG 60
           +K A NLFDE+PKP LVAWN               +A+ L  L  G+   +  L  T + 
Sbjct: 206 VKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSA 265

Query: 61  CRV--------------------------------------------------------W 120
           C                                                          W
Sbjct: 266 CSALGALDFGRWVHSHVKDNDSGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTW 325

Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
           NTM+M  ATHGD EDA TLFS ML EK+ TPD  TFLGVL                    
Sbjct: 326 NTMIMGLATHGDVEDALTLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMT 385

BLAST of Cp4.1LG04g15010 vs. ExPASy TrEMBL
Match: A0A6J1C0S9 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111007228 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 8.33e-32
Identity = 98/266 (36.84%), Postives = 110/266 (41.35%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAI--RLSCLSY-------------GLCTTKHLLSKTRTG 60
           IKTA NLF E+PKPDLVAWN  I   +SC  Y             G+   +  L  T + 
Sbjct: 209 IKTARNLFVEMPKPDLVAWNTVIDCHVSCGMYEEALGLFFRMFQSGIEPDEATLVVTVSA 268

Query: 61  CRV--------------------------------------------------------W 120
           C                                                          W
Sbjct: 269 CSALGALDSGRWVHSHVKHNDRGKTVAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTW 328

Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
           NTM+MA ATHGDAEDA TLFSKML EKLE PD  TFLGVL                    
Sbjct: 329 NTMIMALATHGDAEDALTLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMT 388

BLAST of Cp4.1LG04g15010 vs. ExPASy TrEMBL
Match: A0A5A7UQ05 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002560 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 2.16e-29
Identity = 94/266 (35.34%), Postives = 107/266 (40.23%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAI--RLSC------------------------------- 60
           +  A NLFDE+PK DLVAWN  I   +SC                               
Sbjct: 206 VNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFLQMLQSGVEPDEATLVVTVSA 265

Query: 61  ------LSYGLCTTKHLLSKTR------------------------------TGCRV--W 120
                 L +G     H+ S  R                              +G  V  W
Sbjct: 266 CSALGALDFGRWIHSHVNSNDRGKTTAVFNSLIDMYAKCGAVDYAREMFNAMSGKNVVTW 325

Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
           NTM+M  ATHGDAEDA TLFS ML EK+ETPD  TFL VL                    
Sbjct: 326 NTMIMGLATHGDAEDALTLFSNMLTEKVETPDAVTFLAVLCACNHGGKVEEGRRYFDLMT 385

BLAST of Cp4.1LG04g15010 vs. ExPASy TrEMBL
Match: A0A1S3BWU9 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494002 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 2.16e-29
Identity = 94/266 (35.34%), Postives = 107/266 (40.23%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAI--RLSC------------------------------- 60
           +  A NLFDE+PK DLVAWN  I   +SC                               
Sbjct: 206 VNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFLQMLQSGVEPDEATLVVTVSA 265

Query: 61  ------LSYGLCTTKHLLSKTR------------------------------TGCRV--W 120
                 L +G     H+ S  R                              +G  V  W
Sbjct: 266 CSALGALDFGRWIHSHVNSNDRGKTTAVFNSLIDMYAKCGAVDYAREMFNAMSGKNVVTW 325

Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
           NTM+M  ATHGDAEDA TLFS ML EK+ETPD  TFL VL                    
Sbjct: 326 NTMIMGLATHGDAEDALTLFSNMLTEKVETPDAVTFLAVLCACNHGGKVEEGRRYFDLMT 385

BLAST of Cp4.1LG04g15010 vs. ExPASy TrEMBL
Match: A0A6J1E6Y6 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111429989 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 8.99e-29
Identity = 91/266 (34.21%), Postives = 106/266 (39.85%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWN---------------IAIRLSCLSYGLCTTKHLLSKTRTG 60
           +K A NLFDE+PKP LVAWN               +A+ L  L  G+   +  L  T + 
Sbjct: 206 VKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSA 265

Query: 61  CRV--------------------------------------------------------W 120
           C                                                          W
Sbjct: 266 CSALGALDFGRWVHSHVKDNDSGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTW 325

Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
           NTM+M  ATHGD EDA TLFS ML EK+ TPD  TFLGVL                    
Sbjct: 326 NTMIMGLATHGDVEDALTLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMT 385

BLAST of Cp4.1LG04g15010 vs. ExPASy TrEMBL
Match: A0A6J1JI60 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484809 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 9.25e-29
Identity = 91/266 (34.21%), Postives = 106/266 (39.85%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWN---------------IAIRLSCLSYGLCTTKHLLSKTRTG 60
           +K A NLFDE+PKP LVAWN               +A+ L  L  G+   +  L  T + 
Sbjct: 206 VKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSA 265

Query: 61  CRV--------------------------------------------------------W 120
           C                                                          W
Sbjct: 266 CSALGALDFGRWVHSHVKHNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTW 325

Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
           NTM+M  ATHGD EDA TLFS ML EK+ TPD  TFLGVL                    
Sbjct: 326 NTMIMGLATHGDVEDALTLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMT 385

BLAST of Cp4.1LG04g15010 vs. TAIR 10
Match: AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 47/173 (27.17%), Postives = 71/173 (41.04%), Query Frame = 0

Query: 23  IRLSCLSYGLCTTKHLLSKTRTGCRVWNTMMMAFATHGDAEDAPTLFSKMLREKLETPDV 82
           ++  C+  G    + ++ +    C  WN M++ FA +G   +A  LF +ML E  E PD 
Sbjct: 438 VKCGCVEEGYLVFRKMMER---DCVSWNAMIIGFAQNGYGNEALELFREML-ESGEKPDH 497

Query: 83  ATFLGVLS---------------------------------------------------- 142
            T +GVLS                                                    
Sbjct: 498 ITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIE 557

BLAST of Cp4.1LG04g15010 vs. TAIR 10
Match: AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09
Identity = 47/185 (25.41%), Postives = 78/185 (42.16%), Query Frame = 0

Query: 20  NIAIRLSCLSYGLCTTKHLLSK-TRTGCRVWNTMMMAFATHGDAEDAPTLFSKMLREKLE 79
           N  I +     GL  T+ +  K  R     W++M+ A + HG+A DA +LF++M +E +E
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442

Query: 80  TPDVATFLGVL------------------------------------------------- 139
            P+  TF+GVL                                                 
Sbjct: 443 -PNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREAL 502

Query: 140 ----SMPIECSDIIWRTLLAACWMQRNVVFGERVRSHGLEIEPDHNSNYVL-ANMYAMKR 150
               SMP+  + +IW +L++AC +   +  G+      LE+EPDH+   VL +N+YA ++
Sbjct: 503 EVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQ 562

BLAST of Cp4.1LG04g15010 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-09
Identity = 44/173 (25.43%), Postives = 81/173 (46.82%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAIRLSCLSYGL-----CTTKHLLSKTRTGCRVWNTMMMA 60
           I+ A ++F+ +P+ +++ W+  I    +         C  K   +  R     +  ++ A
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384

Query: 61  FATHGDAEDAPTLFSKMLREKLETPDVATF------LG-----------VLSMPIECSDI 120
            +  G  E+    FS+M+      P +  +      LG           +L+MPI+  D+
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDV 444

Query: 121 IWRTLLAACWMQRNVVFGERVRSHGLEIEPDHNSNYV-LANMYAMKRSMETIA 151
           IW+ LL AC MQ NV  G+RV +  +++ P  +  YV L+NMYA + +   ++
Sbjct: 445 IWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497

BLAST of Cp4.1LG04g15010 vs. TAIR 10
Match: AT2G02980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-09
Identity = 39/157 (24.84%), Postives = 64/157 (40.76%), Query Frame = 0

Query: 47  RVWNTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVLS---------------- 106
           + W+ M++A+A HG AE +  +F +M  E ++ PD  TFLG+L+                
Sbjct: 297 QAWSAMIVAYANHGKAEKSMLMFERMRSENVQ-PDEITFLGLLNACSHTGRVEEGRKYFS 356

Query: 107 -------------------------------------MPIECSDIIWRTLLAACWMQRNV 150
                                                +PI  + ++WR LLAAC    N+
Sbjct: 357 QMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNL 416

BLAST of Cp4.1LG04g15010 vs. TAIR 10
Match: AT3G29230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 49/204 (24.02%), Postives = 75/204 (36.76%), Query Frame = 0

Query: 1   IKTAGNLFDEIPKPDLVAWNIAIRLSCLSYGLCTTKHLLSKTRTGCRVWNTMMMAFATHG 60
           +K A ++F++IPK DLV+                              WNTM+     HG
Sbjct: 366 LKKAFDVFNDIPKKDLVS------------------------------WNTMLHGLGVHG 425

Query: 61  DAEDAPTLFSKMLREKLETPDVATFLGVL------------------------------- 120
             ++A  LFS+M RE +  PD  TF+ VL                               
Sbjct: 426 HGKEAIELFSRMRREGIR-PDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEH 485

Query: 121 ----------------------SMPIECSDIIWRTLLAACWMQRNVVFGERVRSHGLEIE 151
                                 +MP+E + +IW  LL AC M   V   + V  + ++++
Sbjct: 486 YGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLD 538

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SIT73.0e-0927.17Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX... [more]
O233372.5e-0825.41Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX... [more]
Q9FI805.6e-0825.43Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX... [more]
Q8LK937.3e-0824.84Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop... [more]
Q9LS722.1e-0724.02Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
XP_022135209.11.72e-3136.84pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like [Momor... [more]
XP_038880037.11.24e-3035.71pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida][more]
XP_008453215.24.46e-2935.34PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/... [more]
KAG6589516.11.86e-2834.59Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial, partia... [more]
XP_022921850.11.86e-2834.21pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... [more]
Match NameE-valueIdentityDescription
A0A6J1C0S98.33e-3236.84pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like OS=Mom... [more]
A0A5A7UQ052.16e-2935.34Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BWU92.16e-2935.34pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... [more]
A0A6J1E6Y68.99e-2934.21pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... [more]
A0A6J1JI609.25e-2934.21pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... [more]
Match NameE-valueIdentityDescription
AT2G13600.12.1e-1027.17Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G14820.11.8e-0925.41Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G48910.14.0e-0925.43Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G02980.15.2e-0924.84Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G29230.11.5e-0824.02Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 48..81
e-value: 6.1E-6
score: 24.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 48..76
e-value: 1.1E-5
score: 25.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 8.834866
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..149
e-value: 7.5E-10
score: 40.4
NoneNo IPR availablePANTHERPTHR47926PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 48..90
coord: 90..142
NoneNo IPR availablePANTHERPTHR47926:SF177PPR CONTAINING PLANT-LIKE PROTEINcoord: 48..90
coord: 90..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g15010.1Cp4.1LG04g15010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding