Homology
BLAST of Cp4.1LG04g15010 vs. ExPASy Swiss-Prot
Match:
Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 47/173 (27.17%), Postives = 71/173 (41.04%), Query Frame = 0
Query: 23 IRLSCLSYGLCTTKHLLSKTRTGCRVWNTMMMAFATHGDAEDAPTLFSKMLREKLETPDV 82
++ C+ G + ++ + C WN M++ FA +G +A LF +ML E E PD
Sbjct: 438 VKCGCVEEGYLVFRKMMER---DCVSWNAMIIGFAQNGYGNEALELFREML-ESGEKPDH 497
Query: 83 ATFLGVLS---------------------------------------------------- 142
T +GVLS
Sbjct: 498 ITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIE 557
BLAST of Cp4.1LG04g15010 vs. ExPASy Swiss-Prot
Match:
O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 47/185 (25.41%), Postives = 78/185 (42.16%), Query Frame = 0
Query: 20 NIAIRLSCLSYGLCTTKHLLSK-TRTGCRVWNTMMMAFATHGDAEDAPTLFSKMLREKLE 79
N I + GL T+ + K R W++M+ A + HG+A DA +LF++M +E +E
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 80 TPDVATFLGVL------------------------------------------------- 139
P+ TF+GVL
Sbjct: 443 -PNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREAL 502
Query: 140 ----SMPIECSDIIWRTLLAACWMQRNVVFGERVRSHGLEIEPDHNSNYVL-ANMYAMKR 150
SMP+ + +IW +L++AC + + G+ LE+EPDH+ VL +N+YA ++
Sbjct: 503 EVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQ 562
BLAST of Cp4.1LG04g15010 vs. ExPASy Swiss-Prot
Match:
Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08
Identity = 44/173 (25.43%), Postives = 81/173 (46.82%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAIRLSCLSYGL-----CTTKHLLSKTRTGCRVWNTMMMA 60
I+ A ++F+ +P+ +++ W+ I + C K + R + ++ A
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384
Query: 61 FATHGDAEDAPTLFSKMLREKLETPDVATF------LG-----------VLSMPIECSDI 120
+ G E+ FS+M+ P + + LG +L+MPI+ D+
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDV 444
Query: 121 IWRTLLAACWMQRNVVFGERVRSHGLEIEPDHNSNYV-LANMYAMKRSMETIA 151
IW+ LL AC MQ NV G+RV + +++ P + YV L+NMYA + + ++
Sbjct: 445 IWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497
BLAST of Cp4.1LG04g15010 vs. ExPASy Swiss-Prot
Match:
Q8LK93 (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H26 PE=2 SV=2)
HSP 1 Score: 58.5 bits (140), Expect = 7.3e-08
Identity = 39/157 (24.84%), Postives = 64/157 (40.76%), Query Frame = 0
Query: 47 RVWNTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVLS---------------- 106
+ W+ M++A+A HG AE + +F +M E ++ PD TFLG+L+
Sbjct: 297 QAWSAMIVAYANHGKAEKSMLMFERMRSENVQ-PDEITFLGLLNACSHTGRVEEGRKYFS 356
Query: 107 -------------------------------------MPIECSDIIWRTLLAACWMQRNV 150
+PI + ++WR LLAAC N+
Sbjct: 357 QMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNL 416
BLAST of Cp4.1LG04g15010 vs. ExPASy Swiss-Prot
Match:
Q9LS72 (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E27 PE=2 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 49/204 (24.02%), Postives = 75/204 (36.76%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAIRLSCLSYGLCTTKHLLSKTRTGCRVWNTMMMAFATHG 60
+K A ++F++IPK DLV+ WNTM+ HG
Sbjct: 366 LKKAFDVFNDIPKKDLVS------------------------------WNTMLHGLGVHG 425
Query: 61 DAEDAPTLFSKMLREKLETPDVATFLGVL------------------------------- 120
++A LFS+M RE + PD TF+ VL
Sbjct: 426 HGKEAIELFSRMRREGIR-PDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEH 485
Query: 121 ----------------------SMPIECSDIIWRTLLAACWMQRNVVFGERVRSHGLEIE 151
+MP+E + +IW LL AC M V + V + ++++
Sbjct: 486 YGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLD 538
BLAST of Cp4.1LG04g15010 vs. NCBI nr
Match:
XP_022135209.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like [Momordica charantia])
HSP 1 Score: 128 bits (322), Expect = 1.72e-31
Identity = 98/266 (36.84%), Postives = 110/266 (41.35%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAI--RLSCLSY-------------GLCTTKHLLSKTRTG 60
IKTA NLF E+PKPDLVAWN I +SC Y G+ + L T +
Sbjct: 209 IKTARNLFVEMPKPDLVAWNTVIDCHVSCGMYEEALGLFFRMFQSGIEPDEATLVVTVSA 268
Query: 61 CRV--------------------------------------------------------W 120
C W
Sbjct: 269 CSALGALDSGRWVHSHVKHNDRGKTVAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTW 328
Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
NTM+MA ATHGDAEDA TLFSKML EKLE PD TFLGVL
Sbjct: 329 NTMIMALATHGDAEDALTLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMT 388
BLAST of Cp4.1LG04g15010 vs. NCBI nr
Match:
XP_038880037.1 (pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida])
HSP 1 Score: 125 bits (315), Expect = 1.24e-30
Identity = 95/266 (35.71%), Postives = 109/266 (40.98%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAI--RLSCLSY-------------GLCTTKHLLSKTRTG 60
+K A NLFDE+PKPDLVAWN I +SC Y G+ + L T +
Sbjct: 206 VKIARNLFDEMPKPDLVAWNAVIDCHVSCGMYSEALGLFLQMLQSGVEPDEATLVVTVSA 265
Query: 61 CRV--------------------------------------------------------W 120
C W
Sbjct: 266 CSALGALDFGRWVHSHVKRNDKGKTIAVLNSLIDMYAKCGAVEDAREMFNAMSDKNVVTW 325
Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
NTM+M ATHGDAEDA TLFS ML +K+ETPD TFLGVL
Sbjct: 326 NTMIMGLATHGDAEDALTLFSNMLAKKVETPDGVTFLGVLCACNHGGKVEEGREYFHLMT 385
BLAST of Cp4.1LG04g15010 vs. NCBI nr
Match:
XP_008453215.2 (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucumis melo] >KAA0057953.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 121 bits (304), Expect = 4.46e-29
Identity = 94/266 (35.34%), Postives = 107/266 (40.23%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAI--RLSC------------------------------- 60
+ A NLFDE+PK DLVAWN I +SC
Sbjct: 206 VNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFLQMLQSGVEPDEATLVVTVSA 265
Query: 61 ------LSYGLCTTKHLLSKTR------------------------------TGCRV--W 120
L +G H+ S R +G V W
Sbjct: 266 CSALGALDFGRWIHSHVNSNDRGKTTAVFNSLIDMYAKCGAVDYAREMFNAMSGKNVVTW 325
Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
NTM+M ATHGDAEDA TLFS ML EK+ETPD TFL VL
Sbjct: 326 NTMIMGLATHGDAEDALTLFSNMLTEKVETPDAVTFLAVLCACNHGGKVEEGRRYFDLMT 385
BLAST of Cp4.1LG04g15010 vs. NCBI nr
Match:
KAG6589516.1 (Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 120 bits (300), Expect = 1.86e-28
Identity = 92/266 (34.59%), Postives = 107/266 (40.23%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAI--RLSC------------------------------- 60
+K A NLFDE+PKP LVAWN I +SC
Sbjct: 206 VKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSA 265
Query: 61 ------LSYGLCTTKHLLSKTR------------------------------TGCRV--W 120
L +G H+ R +G + W
Sbjct: 266 CSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTW 325
Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
NTM+M ATHGD EDA TLFS ML EK+ TPD TFLGVL
Sbjct: 326 NTMIMGLATHGDVEDALTLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMT 385
BLAST of Cp4.1LG04g15010 vs. NCBI nr
Match:
XP_022921850.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like [Cucurbita moschata])
HSP 1 Score: 120 bits (300), Expect = 1.86e-28
Identity = 91/266 (34.21%), Postives = 106/266 (39.85%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWN---------------IAIRLSCLSYGLCTTKHLLSKTRTG 60
+K A NLFDE+PKP LVAWN +A+ L L G+ + L T +
Sbjct: 206 VKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSA 265
Query: 61 CRV--------------------------------------------------------W 120
C W
Sbjct: 266 CSALGALDFGRWVHSHVKDNDSGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTW 325
Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
NTM+M ATHGD EDA TLFS ML EK+ TPD TFLGVL
Sbjct: 326 NTMIMGLATHGDVEDALTLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMT 385
BLAST of Cp4.1LG04g15010 vs. ExPASy TrEMBL
Match:
A0A6J1C0S9 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111007228 PE=4 SV=1)
HSP 1 Score: 128 bits (322), Expect = 8.33e-32
Identity = 98/266 (36.84%), Postives = 110/266 (41.35%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAI--RLSCLSY-------------GLCTTKHLLSKTRTG 60
IKTA NLF E+PKPDLVAWN I +SC Y G+ + L T +
Sbjct: 209 IKTARNLFVEMPKPDLVAWNTVIDCHVSCGMYEEALGLFFRMFQSGIEPDEATLVVTVSA 268
Query: 61 CRV--------------------------------------------------------W 120
C W
Sbjct: 269 CSALGALDSGRWVHSHVKHNDRGKTVAVFNSLIDMYAKCGAVEDALDIFNTMGSKNRVTW 328
Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
NTM+MA ATHGDAEDA TLFSKML EKLE PD TFLGVL
Sbjct: 329 NTMIMALATHGDAEDALTLFSKMLTEKLENPDDVTFLGVLCACNHGGEVEEGRRYFDLMT 388
BLAST of Cp4.1LG04g15010 vs. ExPASy TrEMBL
Match:
A0A5A7UQ05 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002560 PE=4 SV=1)
HSP 1 Score: 121 bits (304), Expect = 2.16e-29
Identity = 94/266 (35.34%), Postives = 107/266 (40.23%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAI--RLSC------------------------------- 60
+ A NLFDE+PK DLVAWN I +SC
Sbjct: 206 VNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFLQMLQSGVEPDEATLVVTVSA 265
Query: 61 ------LSYGLCTTKHLLSKTR------------------------------TGCRV--W 120
L +G H+ S R +G V W
Sbjct: 266 CSALGALDFGRWIHSHVNSNDRGKTTAVFNSLIDMYAKCGAVDYAREMFNAMSGKNVVTW 325
Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
NTM+M ATHGDAEDA TLFS ML EK+ETPD TFL VL
Sbjct: 326 NTMIMGLATHGDAEDALTLFSNMLTEKVETPDAVTFLAVLCACNHGGKVEEGRRYFDLMT 385
BLAST of Cp4.1LG04g15010 vs. ExPASy TrEMBL
Match:
A0A1S3BWU9 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494002 PE=4 SV=1)
HSP 1 Score: 121 bits (304), Expect = 2.16e-29
Identity = 94/266 (35.34%), Postives = 107/266 (40.23%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAI--RLSC------------------------------- 60
+ A NLFDE+PK DLVAWN I +SC
Sbjct: 206 VNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFLQMLQSGVEPDEATLVVTVSA 265
Query: 61 ------LSYGLCTTKHLLSKTR------------------------------TGCRV--W 120
L +G H+ S R +G V W
Sbjct: 266 CSALGALDFGRWIHSHVNSNDRGKTTAVFNSLIDMYAKCGAVDYAREMFNAMSGKNVVTW 325
Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
NTM+M ATHGDAEDA TLFS ML EK+ETPD TFL VL
Sbjct: 326 NTMIMGLATHGDAEDALTLFSNMLTEKVETPDAVTFLAVLCACNHGGKVEEGRRYFDLMT 385
BLAST of Cp4.1LG04g15010 vs. ExPASy TrEMBL
Match:
A0A6J1E6Y6 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111429989 PE=4 SV=1)
HSP 1 Score: 120 bits (300), Expect = 8.99e-29
Identity = 91/266 (34.21%), Postives = 106/266 (39.85%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWN---------------IAIRLSCLSYGLCTTKHLLSKTRTG 60
+K A NLFDE+PKP LVAWN +A+ L L G+ + L T +
Sbjct: 206 VKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSA 265
Query: 61 CRV--------------------------------------------------------W 120
C W
Sbjct: 266 CSALGALDFGRWVHSHVKDNDSGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTW 325
Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
NTM+M ATHGD EDA TLFS ML EK+ TPD TFLGVL
Sbjct: 326 NTMIMGLATHGDVEDALTLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMT 385
BLAST of Cp4.1LG04g15010 vs. ExPASy TrEMBL
Match:
A0A6J1JI60 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484809 PE=4 SV=1)
HSP 1 Score: 120 bits (300), Expect = 9.25e-29
Identity = 91/266 (34.21%), Postives = 106/266 (39.85%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWN---------------IAIRLSCLSYGLCTTKHLLSKTRTG 60
+K A NLFDE+PKP LVAWN +A+ L L G+ + L T +
Sbjct: 206 VKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSA 265
Query: 61 CRV--------------------------------------------------------W 120
C W
Sbjct: 266 CSALGALDFGRWVHSHVKHNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTW 325
Query: 121 NTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVL-------------------- 141
NTM+M ATHGD EDA TLFS ML EK+ TPD TFLGVL
Sbjct: 326 NTMIMGLATHGDVEDALTLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMT 385
BLAST of Cp4.1LG04g15010 vs. TAIR 10
Match:
AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein )
HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 47/173 (27.17%), Postives = 71/173 (41.04%), Query Frame = 0
Query: 23 IRLSCLSYGLCTTKHLLSKTRTGCRVWNTMMMAFATHGDAEDAPTLFSKMLREKLETPDV 82
++ C+ G + ++ + C WN M++ FA +G +A LF +ML E E PD
Sbjct: 438 VKCGCVEEGYLVFRKMMER---DCVSWNAMIIGFAQNGYGNEALELFREML-ESGEKPDH 497
Query: 83 ATFLGVLS---------------------------------------------------- 142
T +GVLS
Sbjct: 498 ITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIE 557
BLAST of Cp4.1LG04g15010 vs. TAIR 10
Match:
AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )
HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09
Identity = 47/185 (25.41%), Postives = 78/185 (42.16%), Query Frame = 0
Query: 20 NIAIRLSCLSYGLCTTKHLLSK-TRTGCRVWNTMMMAFATHGDAEDAPTLFSKMLREKLE 79
N I + GL T+ + K R W++M+ A + HG+A DA +LF++M +E +E
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 80 TPDVATFLGVL------------------------------------------------- 139
P+ TF+GVL
Sbjct: 443 -PNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREAL 502
Query: 140 ----SMPIECSDIIWRTLLAACWMQRNVVFGERVRSHGLEIEPDHNSNYVL-ANMYAMKR 150
SMP+ + +IW +L++AC + + G+ LE+EPDH+ VL +N+YA ++
Sbjct: 503 EVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQ 562
BLAST of Cp4.1LG04g15010 vs. TAIR 10
Match:
AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )
HSP 1 Score: 58.9 bits (141), Expect = 4.0e-09
Identity = 44/173 (25.43%), Postives = 81/173 (46.82%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAIRLSCLSYGL-----CTTKHLLSKTRTGCRVWNTMMMA 60
I+ A ++F+ +P+ +++ W+ I + C K + R + ++ A
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384
Query: 61 FATHGDAEDAPTLFSKMLREKLETPDVATF------LG-----------VLSMPIECSDI 120
+ G E+ FS+M+ P + + LG +L+MPI+ D+
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDV 444
Query: 121 IWRTLLAACWMQRNVVFGERVRSHGLEIEPDHNSNYV-LANMYAMKRSMETIA 151
IW+ LL AC MQ NV G+RV + +++ P + YV L+NMYA + + ++
Sbjct: 445 IWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497
BLAST of Cp4.1LG04g15010 vs. TAIR 10
Match:
AT2G02980.1 (Pentatricopeptide repeat (PPR) superfamily protein )
HSP 1 Score: 58.5 bits (140), Expect = 5.2e-09
Identity = 39/157 (24.84%), Postives = 64/157 (40.76%), Query Frame = 0
Query: 47 RVWNTMMMAFATHGDAEDAPTLFSKMLREKLETPDVATFLGVLS---------------- 106
+ W+ M++A+A HG AE + +F +M E ++ PD TFLG+L+
Sbjct: 297 QAWSAMIVAYANHGKAEKSMLMFERMRSENVQ-PDEITFLGLLNACSHTGRVEEGRKYFS 356
Query: 107 -------------------------------------MPIECSDIIWRTLLAACWMQRNV 150
+PI + ++WR LLAAC N+
Sbjct: 357 QMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNL 416
BLAST of Cp4.1LG04g15010 vs. TAIR 10
Match:
AT3G29230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 49/204 (24.02%), Postives = 75/204 (36.76%), Query Frame = 0
Query: 1 IKTAGNLFDEIPKPDLVAWNIAIRLSCLSYGLCTTKHLLSKTRTGCRVWNTMMMAFATHG 60
+K A ++F++IPK DLV+ WNTM+ HG
Sbjct: 366 LKKAFDVFNDIPKKDLVS------------------------------WNTMLHGLGVHG 425
Query: 61 DAEDAPTLFSKMLREKLETPDVATFLGVL------------------------------- 120
++A LFS+M RE + PD TF+ VL
Sbjct: 426 HGKEAIELFSRMRREGIR-PDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEH 485
Query: 121 ----------------------SMPIECSDIIWRTLLAACWMQRNVVFGERVRSHGLEIE 151
+MP+E + +IW LL AC M V + V + ++++
Sbjct: 486 YGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLD 538
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SIT7 | 3.0e-09 | 27.17 | Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX... | [more] |
O23337 | 2.5e-08 | 25.41 | Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX... | [more] |
Q9FI80 | 5.6e-08 | 25.43 | Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX... | [more] |
Q8LK93 | 7.3e-08 | 24.84 | Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop... | [more] |
Q9LS72 | 2.1e-07 | 24.02 | Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX... | [more] |
Match Name | E-value | Identity | Description | |
XP_022135209.1 | 1.72e-31 | 36.84 | pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like [Momor... | [more] |
XP_038880037.1 | 1.24e-30 | 35.71 | pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida] | [more] |
XP_008453215.2 | 4.46e-29 | 35.34 | PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/... | [more] |
KAG6589516.1 | 1.86e-28 | 34.59 | Pentatricopeptide repeat-containing protein, chloroplastic/mitochondrial, partia... | [more] |
XP_022921850.1 | 1.86e-28 | 34.21 | pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1C0S9 | 8.33e-32 | 36.84 | pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like OS=Mom... | [more] |
A0A5A7UQ05 | 2.16e-29 | 35.34 | Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... | [more] |
A0A1S3BWU9 | 2.16e-29 | 35.34 | pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... | [more] |
A0A6J1E6Y6 | 8.99e-29 | 34.21 | pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... | [more] |
A0A6J1JI60 | 9.25e-29 | 34.21 | pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... | [more] |
Match Name | E-value | Identity | Description | |
AT2G13600.1 | 2.1e-10 | 27.17 | Pentatricopeptide repeat (PPR) superfamily protein | [more] |
AT4G14820.1 | 1.8e-09 | 25.41 | Pentatricopeptide repeat (PPR) superfamily protein | [more] |
AT5G48910.1 | 4.0e-09 | 25.43 | Pentatricopeptide repeat (PPR) superfamily protein | [more] |
AT2G02980.1 | 5.2e-09 | 24.84 | Pentatricopeptide repeat (PPR) superfamily protein | [more] |
AT3G29230.1 | 1.5e-08 | 24.02 | Tetratricopeptide repeat (TPR)-like superfamily protein | [more] |