Cp4.1LG04g14740 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g14740
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein Asterix-like
Location	Cp4.1LG04: 11676932 .. 11677365 (+)
RNA-Seq Expression	Cp4.1LG04g14740
Synteny	Cp4.1LG04g14740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTATAGACCCGATCCAATCCGCGTATAGTTTTGACTTTTGAATTTTAGATTTATCACAGCAATCACATCGACACTTGAGAACGAGTCTAGAGATGTCGACACAAGCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCTTTTGTTTCTCCGGCTGTGAACCCGCAAGATCTTCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTTGGCATCGCTGGCGTCATGTTCAGGGTATGCCTGTTTCTTTCCGAGCACTGATACGATAACTATGGGGATCTTACATTTTACTGATGCGATAGTCTTATTTTTCGTTAAAATTGAGCAGTACAAGCTTAGCTCTTGGCTAGCCATCATATTCTGCGCTCAATCGCTTGCTAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCTATGATGTGA

mRNA sequence

AATTATAGACCCGATCCAATCCGCGTATAGTTTTGACTTTTGAATTTTAGATTTATCACAGCAATCACATCGACACTTGAGAACGAGTCTAGAGATGTCGACACAAGCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCTTTTGTTTCTCCGGCTGTGAACCCGCAAGATCTTCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTTGGCATCGCTGGCGTCATGTTCAGGTACAAGCTTAGCTCTTGGCTAGCCATCATATTCTGCGCTCAATCGCTTGCTAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCTATGATGTGA

Coding sequence (CDS)

ATGTCGACACAAGCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCTTTTGTTTCTCCGGCTGTGAACCCGCAAGATCTTCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTTGGCATCGCTGGCGTCATGTTCAGGTACAAGCTTAGCTCTTGGCTAGCCATCATATTCTGCGCTCAATCGCTTGCTAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCTATGATGTGA

Protein sequence

MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQSLANMRNMENDLKQISMAMM

Homology

[Close]

BLAST of Cp4.1LG04g14740 vs. ExPASy Swiss-Prot
Match: Q9SD88 (Protein Asterix OS=Arabidopsis thaliana OX=3702 GN=At5g07960 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-29
Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 2  STQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
          ++  NDPRQPSAAKP++   V P+DLPVDYSGFIAV+ G++GVMFRYK+ SWLAIIFCAQ
Sbjct: 8  ASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQ 67

Query: 62 SLANMRNMENDLKQISMAMM 82
          SLANMRN+ENDLKQISMAMM
Sbjct: 68 SLANMRNLENDLKQISMAMM 87

[Close]

BLAST of Cp4.1LG04g14740 vs. NCBI nr
Match: XP_022933634.1 (protein Asterix-like [Cucurbita moschata] >XP_023007397.1 protein Asterix-like [Cucurbita maxima] >XP_023529496.1 protein Asterix-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157 bits (398), Expect = 4.07e-48
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
          MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61 QSLANMRNMENDLKQISMAMM 81
          QSLANMRNMENDLKQISMAMM
Sbjct: 61 QSLANMRNMENDLKQISMAMM 81

[Close]

BLAST of Cp4.1LG04g14740 vs. NCBI nr
Match: KAG7021543.1 (Protein Asterix, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157 bits (398), Expect = 9.13e-48
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
           MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 47  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 106

Query: 61  QSLANMRNMENDLKQISMAMM 81
           QSLANMRNMENDLKQISMAMM
Sbjct: 107 QSLANMRNMENDLKQISMAMM 127

[Close]

BLAST of Cp4.1LG04g14740 vs. NCBI nr
Match: KAG6587575.1 (Protein Asterix, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157 bits (398), Expect = 1.70e-47
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
           MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 47  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 106

Query: 61  QSLANMRNMENDLKQISMAMM 81
           QSLANMRNMENDLKQISMAMM
Sbjct: 107 QSLANMRNMENDLKQISMAMM 127

[Close]

BLAST of Cp4.1LG04g14740 vs. NCBI nr
Match: XP_022921505.1 (protein Asterix-like [Cucurbita moschata] >XP_023515471.1 protein Asterix [Cucurbita pepo subsp. pepo] >KAG7023226.1 Protein Asterix, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154 bits (389), Expect = 9.60e-47
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
          MSTQANDPRQPSAAKPFVSP VNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1  MSTQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61 QSLANMRNMENDLKQISMAMM 81
          QSLANMRN+ENDLKQISMAMM
Sbjct: 61 QSLANMRNIENDLKQISMAMM 81

[Close]

BLAST of Cp4.1LG04g14740 vs. NCBI nr
Match: KAA0057985.1 (protein Asterix [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (387), Expect = 1.06e-46
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
          MSTQANDPRQPSA KPFV+PAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1  MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61 QSLANMRNMENDLKQISMAMM 81
          QSLANMRN+ENDLKQISMAMM
Sbjct: 61 QSLANMRNVENDLKQISMAMM 81

[Close]

BLAST of Cp4.1LG04g14740 vs. ExPASy TrEMBL
Match: A0A6J1KYK4 (protein Asterix-like OS=Cucurbita maxima OX=3661 GN=LOC111499903 PE=4 SV=1)

HSP 1 Score: 157 bits (398), Expect = 1.97e-48
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
          MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61 QSLANMRNMENDLKQISMAMM 81
          QSLANMRNMENDLKQISMAMM
Sbjct: 61 QSLANMRNMENDLKQISMAMM 81

[Close]

BLAST of Cp4.1LG04g14740 vs. ExPASy TrEMBL
Match: A0A6J1F0A5 (protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111440996 PE=4 SV=1)

HSP 1 Score: 157 bits (398), Expect = 1.97e-48
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
          MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61 QSLANMRNMENDLKQISMAMM 81
          QSLANMRNMENDLKQISMAMM
Sbjct: 61 QSLANMRNMENDLKQISMAMM 81

[Close]

BLAST of Cp4.1LG04g14740 vs. ExPASy TrEMBL
Match: A0A6J1E5Z1 (protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111429753 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 4.65e-47
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
          MSTQANDPRQPSAAKPFVSP VNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1  MSTQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61 QSLANMRNMENDLKQISMAMM 81
          QSLANMRN+ENDLKQISMAMM
Sbjct: 61 QSLANMRNIENDLKQISMAMM 81

[Close]

BLAST of Cp4.1LG04g14740 vs. ExPASy TrEMBL
Match: A0A5A7UWJ6 (Protein Asterix OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002890 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 5.13e-47
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
          MSTQANDPRQPSA KPFV+PAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1  MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61 QSLANMRNMENDLKQISMAMM 81
          QSLANMRN+ENDLKQISMAMM
Sbjct: 61 QSLANMRNVENDLKQISMAMM 81

[Close]

BLAST of Cp4.1LG04g14740 vs. ExPASy TrEMBL
Match: A0A0A0LSF0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013160 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 9.38e-47
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
          MSTQANDPRQPSA KPFV+PAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1  MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61 QSLANMRNMENDLKQISMAMM 81
          QSLANMRN+ENDLKQISMAMM
Sbjct: 61 QSLANMRNIENDLKQISMAMM 81

[Close]

BLAST of Cp4.1LG04g14740 vs. TAIR 10
Match: AT5G07960.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). )

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-30
Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 2  STQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
          ++  NDPRQPSAAKP++   V P+DLPVDYSGFIAV+ G++GVMFRYK+ SWLAIIFCAQ
Sbjct: 8  ASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQ 67

Query: 62 SLANMRNMENDLKQISMAMM 82
          SLANMRN+ENDLKQISMAMM
Sbjct: 68 SLANMRNLENDLKQISMAMM 87

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g14740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD88	1.8e-29	77.50	Protein Asterix OS=Arabidopsis thaliana OX=3702 GN=At5g07960 PE=3 SV=1	[more]

BLAST of Cp4.1LG04g14740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933634.1	4.07e-48	100.00	protein Asterix-like [Cucurbita moschata] >XP_023007397.1 protein Asterix-like [...	[more]
KAG7021543.1	9.13e-48	100.00	Protein Asterix, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6587575.1	1.70e-47	100.00	Protein Asterix, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022921505.1	9.60e-47	97.53	protein Asterix-like [Cucurbita moschata] >XP_023515471.1 protein Asterix [Cucur...	[more]
KAA0057985.1	1.06e-46	96.30	protein Asterix [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG04g14740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYK4	1.97e-48	100.00	protein Asterix-like OS=Cucurbita maxima OX=3661 GN=LOC111499903 PE=4 SV=1	[more]
A0A6J1F0A5	1.97e-48	100.00	protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111440996 PE=4 SV=1	[more]
A0A6J1E5Z1	4.65e-47	97.53	protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111429753 PE=4 SV=1	[more]
A0A5A7UWJ6	5.13e-47	96.30	Protein Asterix OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G0028...	[more]
A0A0A0LSF0	9.38e-47	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013160 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g14740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07960.1	1.3e-30	77.50	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005351	PAT complex subunit Asterix	PFAM	PF03669	UPF0139	coord: 5..81 e-value: 2.1E-27 score: 94.8
IPR005351	PAT complex subunit Asterix	PANTHER	PTHR13193	CGI-140	coord: 2..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g14740.1	Cp4.1LG04g14740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0045048	protein insertion into ER membrane
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0044183	protein folding chaperone