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Cp4.1LG04g14180 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGGACAAAAGATGATTTTTTGCTTTTAATTTTATAGCATTGTTTAAATTTTTAATCCATACAAGACATTTTCCGGTTCAGAATACAAGTCCGGTCCGAGTCCCCATCACTCCCCACTACCATTTTGGCGGCAAAATTCCTCCATTTGTGCGAAAGCTTGGGAGCTTCCATTTGCTCTCGATTTAAATTTCTTCTCTAGTTTTTCATTGGGAAAGATGCATTTTTGAGGAAGGGAAAGGCATTTTTTCATGGAAGAAAGTAAGGGCGAGGTGGTATTCGATTCGCTGAATCTGGATCCACATCTCTTCATTAATGAAGCTCTCAACGTTGTTGACGATTTGGTTGGTGATGCTTTCGATTTCTATCAATCGTATGCTTCTCTCTGTCTCGTCTCTTCGATTTGGATTTACAATTTTGTTCGGTTAAGTTTAGTCCTGTGAATTCCTTTTCCCTTCAGACAAGCATCAGCCGCCTTGAAGACCGAGGGCTCGGATAGATCCCAGGATCTTATAATGGTAAGGTTTTGGTTATGTTACTTGACAGTTTCTTATCAGTCGTTAATTTCCGATTTCTTAAGTTGTTACTCTGAAGCACTACTTCGAAATTGTTCCGGTTGTCTTTGAATTAAATTGTTTATTCTACCTAGGGAATATCGCGGGTCCGAACTCTCGTCCAATCGGGTCTGGATAAGCGGTTAGCCATGTGGGAGAAGTACTGTCTCAATCACTGTTTTTCAGTCCCTGAAGATTTTTCTTTACCCTCAAATGTGGGTTCTTCTACTCTGTCTGTGAAGAGGCTCCTGCTATTTTTATTTGGCGAAATTGCTCTATTATTGTTGTTTTTGTAACTGAATTCATTTCACAAGTGATTAATTGAGCATGTAAAAATGACTGTTTGCTTATGCAGCGAGTTTCCCACTTCTAATGTATATATGTGTACTGGCTTGGGAGCTTACTCAATTTTTGGTTCTGGGACGAACATATTTTGAAATGTTGGAAAAGCTTACTCAATTTATGCATCATCAAGTTTAATTTAGATCTAAATCTTTTCTTTAAGTTGTCGTAGGATGAATCTCCTGCTGACACTTCGATAAGTTATGGCTGCCTCTATGATGTGGATCTGGATACAGAGCTAGATTCTTTAAGGAATAAGCTCTCGGAGGTATTGAGTGCTTCATATGTTGATTACTTCTTGTGTTTCTGTAATTTCATAAGAAAATATATTTTTCAGGTCAGAAAAGAGAATGTTGAACTGAACCTGGAATTCCTAGTTTTGGAAAGGAAAACTGCTTCAAGTAACTCCCAAGCCAATTATTTCAACGAAGCATTACAGTTATACGAGCAAAGCTCTGTGAATGAGATGTTCAAGGGTAATTAAGTTATGCTTAGAATCGATTGTTTCTTCATGCACTCCTGACCATACATGCGCCATTATCCTATTAGTATACTCATGAGGGGGAAGACTCGAAATGAAATATACAAATAATGTGTGGAGCTGATTTATTTTGTTTTTCTTGTAATAAATTTGTATCGTCATAGCCCGCTTGGTAGATTAATTTTTTTGCAGACGCTGACTTTCTCCTCTGATTGATCATCCTCGTCTGCATAACCACGTGATACAAACTCTAATACATCCAAATAATATTTTAGTGAAGACCTGCACATTCCTTTGTTTCTGGTTTTGTTTAGGCGACTTTATTTTGCATCTAGATTTTCACATCGATCAAGGAGGGAAACGAAATATTCCTTATAAGGGTGTGAACCTCTCCTCAGCAGATGCGTTTTAAAACCGTGAGGTTGGTGGCGATACGACCAAAGAGGACAATATTTGTTAGGGGTAGACTTGGACCATTACATGATATTTCTTTTTGTTTTCTACGGGGTTCATCCGAGGAACGCTAGTCCGTGAATAATGCAATTTCTCTCGGTGTTTTCATTTTGAAAGCCAGTTGAAACACAATTTATTCATTAGCATTAAATTTCATTATACCTAAATTTAAACAGTTGGCAGGTAAAAGATGTTCATGATTTTTGGAATCAGAATTCTAACAAATATCAAATTCTTGCAGAAATGATGGGAACTGCATCGGACCTGCGAGCGAAAATAGGAAAGCTGAAGAGAAGGAAGATGGAGGATTCCAAGCTCACTAACGTAGATAAGGTTCATACAAACGGAGACATCTCTCACCATCACAAGGGTATGATTTTCATTTTTTCAAGCTACTTCAGCATCAATAAGCTTGTTTTAGCTTTGTGGAAGGTGAATATCATCTAACATCCTATTTAATGCTTGTTTCTATTCTCAGGTTTCTCTAATGCTAAGCTGGATGACATTCCAGAAATTTTAGCCTATTTGAACCTCTGAACTTCATTATGACATCAACCTTACTGTATATTATGCTTGCTGTGGATCTTGTCACTATGAGTTCTTCAATGTTTTAACTTGATTTAGCTGTGAGATATTCTAATCTGTATAAATATATCATTTGGACTGATGAGTCTCCTTAATAGTCTCCATAGAGAATTTGCAGATGGGCCATGAACAGGCGTTGCCTCCCCAGATAGATCCGTACATATTTTCTCATGAAATTGAATTGCAGTTCATATTATTTTGGAACAGCTGGTGTAGATATCAAAAGGAATCATTTCTGAGGCTCTTGAACAAAAGTAAGCCTAAACTACCAACTGCAAGCGTTAGTAAAAGTGGGTTTCTGATGGATTCAAAATCAGCAATCTTCCACATCCCCTCGTTGTCAGCTTTGCCCCGATGACTCCTCTCGCTCGAGTACTCCCGGAGAAGATTGCTCAAATTGTCAACTTGGAGGATAATTTGACGCTGCGCCCGTGCTATATTTTGTATCTGGAAAATGTGAATGGAAAGCACAAAAATCATACTTCTAAGTTTGAATCTTAAAACCAAAGAAGAAAAGAAGTCATACTCATCAAAATACCTCTTCTAGCAGGGGAGATTCCTTAGCCAATTGGGAGGACGACAAAGAATGAGATAGCAGCGATCCAGTTAAGGCACCATTACTCAAGCCAGATATGAAAATTGAAGTTGCCCCAGAGCCGTTGTTGCTCGCATCGGCTTGTGAAGACAAGTTCTGCTGGCTAGCAGAAACGTTTCTAGTAGAGATCTTGGAGTTCAGCTCATCAATACGAGTTGTGAACTCATCCATCCTCTCGCTGAGAGTAGAAATCTGTTCTGAAAGTTGTGTAATGGCTCCCTGAATGAATTTTGAGATGGATCAGCAAATTAAAAAGCTGAGGACTTCCTCGACTCATTCAGCAATACTGTTAACCAAGAAACTATATGAATGTTTTATCTCTTCTTTGGGTCAAAGTCTTTACCAACACGTTCAGCCT AAGGACAAAAGATGATTTTTTGCTTTTAATTTTATAGCATTGTTTAAATTTTTAATCCATACAAGACATTTTCCGGTTCAGAATACAAGTCCGGTCCGAGTCCCCATCACTCCCCACTACCATTTTGGCGGCAAAATTCCTCCATTTGTGCGAAAGCTTGGGAGCTTCCATTTGCTCTCGATTTAAATTTCTTCTCTAGTTTTTCATTGGGAAAGATGCATTTTTGAGGAAGGGAAAGGCATTTTTTCATGGAAGAAAGTAAGGGCGAGGTGGTATTCGATTCGCTGAATCTGGATCCACATCTCTTCATTAATGAAGCTCTCAACGTTGTTGACGATTTGGTTGGTGATGCTTTCGATTTCTATCAATCACAAGCATCAGCCGCCTTGAAGACCGAGGGCTCGGATAGATCCCAGGATCTTATAATGGGAATATCGCGGGTCCGAACTCTCGTCCAATCGGGTCTGGATAAGCGGTTAGCCATGTGGGAGAAGTACTGTCTCAATCACTGTTTTTCAGTCCCTGAAGATTTTTCTTTACCCTCAAATGATGAATCTCCTGCTGACACTTCGATAAGTTATGGCTGCCTCTATGATGTGGATCTGGATACAGAGCTAGATTCTTTAAGGAATAAGCTCTCGGAGGTCAGAAAAGAGAATGTTGAACTGAACCTGGAATTCCTAGTTTTGGAAAGGAAAACTGCTTCAAGTAACTCCCAAGCCAATTATTTCAACGAAGCATTACAGTTATACGAGCAAAGCTCTGTGAATGAGATGTTCAAGGAAATGATGGGAACTGCATCGGACCTGCGAGCGAAAATAGGAAAGCTGAAGAGAAGGAAGATGGAGGATTCCAAGCTCACTAACGTAGATAAGGTTCATACAAACGGAGACATCTCTCACCATCACAAGGGTTTCTCTAATGCTAAGCTGGATGACATTCCAGAAATTTTAGCCTATTTGAACCTCTGAACTTCATTATGACATCAACCTTACTGTATATTATGCTTGCTGTGGATCTTGTCACTATGAGTTCTTCAATGTTTTAACTTGATTTAGCTGTGAGATATTCTAATCTGTATAAATATATCATTTGGACTGATGAGTCTCCTTAATAGTCTCCATAGAGAATTTGCAGATGGGCCATGAACAGGCGTTGCCTCCCCAGATAGATCCGTACATATTTTCTCATGAAATTGAATTGCAGTTCATATTATTTTGGAACAGCTGGTGTAGATATCAAAAGGAATCATTTCTGAGGCTCTTGAACAAAAGTAAGCCTAAACTACCAACTGCAAGCGTTAGTAAAAGTGGGTTTCTGATGGATTCAAAATCAGCAATCTTCCACATCCCCTCGTTGTCAGCTTTGCCCCGATGACTCCTCTCGCTCGAGTACTCCCGGAGAAGATTGCTCAAATTGTCAACTTGGAGGATAATTTGACGCTGCGCCCGTGCTATATTTTGTATCTGGAAAATGTGAATGGAAAGCACAAAAATCATACTTCTAAGTTTGAATCTTAAAACCAAAGAAGAAAAGAAGTCATACTCATCAAAATACCTCTTCTAGCAGGGGAGATTCCTTAGCCAATTGGGAGGACGACAAAGAATGAGATAGCAGCGATCCAGTTAAGGCACCATTACTCAAGCCAGATATGAAAATTGAAGTTGCCCCAGAGCCGTTGTTGCTCGCATCGGCTTGTGAAGACAAGTTCTGCTGGCTAGCAGAAACGTTTCTAGTAGAGATCTTGGAGTTCAGCTCATCAATACGAGTTGTGAACTCATCCATCCTCTCGCTGAGAGTAGAAATCTGTTCTGAAAGTTGTGTAATGGCTCCCTGAATGAATTTTGAGATGGATCAGCAAATTAAAAAGCTGAGGACTTCCTCGACTCATTCAGCAATACTGTTAACCAAGAAACTATATGAATGTTTTATCTCTTCTTTGGGTCAAAGTCTTTACCAACACGTTCAGCCT ATGGAAGAAAGTAAGGGCGAGGTGGTATTCGATTCGCTGAATCTGGATCCACATCTCTTCATTAATGAAGCTCTCAACGTTGTTGACGATTTGGTTGGTGATGCTTTCGATTTCTATCAATCACAAGCATCAGCCGCCTTGAAGACCGAGGGCTCGGATAGATCCCAGGATCTTATAATGGGAATATCGCGGGTCCGAACTCTCGTCCAATCGGGTCTGGATAAGCGGTTAGCCATGTGGGAGAAGTACTGTCTCAATCACTGTTTTTCAGTCCCTGAAGATTTTTCTTTACCCTCAAATGATGAATCTCCTGCTGACACTTCGATAAGTTATGGCTGCCTCTATGATGTGGATCTGGATACAGAGCTAGATTCTTTAAGGAATAAGCTCTCGGAGGTCAGAAAAGAGAATGTTGAACTGAACCTGGAATTCCTAGTTTTGGAAAGGAAAACTGCTTCAAGTAACTCCCAAGCCAATTATTTCAACGAAGCATTACAGTTATACGAGCAAAGCTCTGTGAATGAGATGTTCAAGGAAATGATGGGAACTGCATCGGACCTGCGAGCGAAAATAGGAAAGCTGAAGAGAAGGAAGATGGAGGATTCCAAGCTCACTAACGTAGATAAGGTTCATACAAACGGAGACATCTCTCACCATCACAAGGGTTTCTCTAATGCTAAGCTGGATGACATTCCAGAAATTTTAGCCTATTTGAACCTCTGA MEESKGEVVFDSLNLDPHLFINEALNVVDDLVGDAFDFYQSQASAALKTEGSDRSQDLIMGISRVRTLVQSGLDKRLAMWEKYCLNHCFSVPEDFSLPSNDESPADTSISYGCLYDVDLDTELDSLRNKLSEVRKENVELNLEFLVLERKTASSNSQANYFNEALQLYEQSSVNEMFKEMMGTASDLRAKIGKLKRRKMEDSKLTNVDKVHTNGDISHHHKGFSNAKLDDIPEILAYLNL Homology
BLAST of Cp4.1LG04g14180 vs. ExPASy Swiss-Prot
Match: Q2V0Z5 (Protein MIS12 homolog OS=Arabidopsis thaliana OX=3702 GN=MIS12 PE=3 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 4.2e-50 Identity = 116/244 (47.54%), Postives = 160/244 (65.57%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. NCBI nr
Match: XP_023530578.1 (protein MIS12 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 468 bits (1205), Expect = 2.87e-166 Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. NCBI nr
Match: XP_022931718.1 (protein MIS12 homolog isoform X1 [Cucurbita moschata]) HSP 1 Score: 437 bits (1125), Expect = 4.50e-154 Identity = 225/240 (93.75%), Postives = 229/240 (95.42%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. NCBI nr
Match: KAG6589575.1 (Protein MIS12-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 391 bits (1005), Expect = 9.00e-136 Identity = 201/238 (84.45%), Postives = 216/238 (90.76%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. NCBI nr
Match: XP_023515499.1 (protein MIS12 homolog isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 389 bits (999), Expect = 7.38e-135 Identity = 200/238 (84.03%), Postives = 215/238 (90.34%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. NCBI nr
Match: KAG7023263.1 (Protein MIS12-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 388 bits (996), Expect = 2.11e-134 Identity = 199/238 (83.61%), Postives = 215/238 (90.34%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. ExPASy TrEMBL
Match: A0A6J1EZI4 (protein MIS12 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437868 PE=3 SV=1) HSP 1 Score: 437 bits (1125), Expect = 2.18e-154 Identity = 225/240 (93.75%), Postives = 229/240 (95.42%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. ExPASy TrEMBL
Match: A0A6J1E0A1 (protein MIS12 homolog OS=Cucurbita moschata OX=3662 GN=LOC111429660 PE=3 SV=1) HSP 1 Score: 385 bits (990), Expect = 8.39e-134 Identity = 197/238 (82.77%), Postives = 214/238 (89.92%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. ExPASy TrEMBL
Match: A0A6J1JME3 (protein MIS12 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485708 PE=3 SV=1) HSP 1 Score: 384 bits (985), Expect = 4.85e-133 Identity = 197/238 (82.77%), Postives = 213/238 (89.50%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. ExPASy TrEMBL
Match: A0A6J1JD43 (protein MIS12 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485708 PE=3 SV=1) HSP 1 Score: 379 bits (973), Expect = 3.38e-131 Identity = 197/239 (82.43%), Postives = 213/239 (89.12%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. ExPASy TrEMBL
Match: A0A6J1C2Q6 (protein MIS12 homolog OS=Momordica charantia OX=3673 GN=LOC111006900 PE=3 SV=1) HSP 1 Score: 374 bits (959), Expect = 4.42e-129 Identity = 191/238 (80.25%), Postives = 213/238 (89.50%), Query Frame = 0
BLAST of Cp4.1LG04g14180 vs. TAIR 10
Match: AT5G35520.1 (minichromosome instability 12 (mis12)-like ) HSP 1 Score: 199.5 bits (506), Expect = 3.0e-51 Identity = 116/244 (47.54%), Postives = 160/244 (65.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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