Cp4.1LG04g13930 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g13930
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG04: 11177087 .. 11177617 (-)
RNA-Seq ExpressionCp4.1LG04g13930
SyntenyCp4.1LG04g13930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACTGGGTATGCTCAGAGTGGCAATATTGATCAAGCCAGGATTCTGTTTGATGAGATGCCTCAACGTGACTGTATATCATGGGCAGCTATGATCGCCGGCTATGCCCAAAGCAGCCAGAGTGAAGAGGCCTTGCAGCTCTTTATTATGATGAAAAGAAATGGAGAAAGGTTAAATAGATCTGCGTTGACATGTGCATTGAGCTCGTGTGCAGAGATTGCGGCTTTCGAGTTAGGGAAACAGCTTCATGGACGGCTAATTAAGGCAGGATTCCAAACTGGGTATTATGTGGGAAATGCTCTTTTAGCCATGTATAGCAAATGTGGAAGTATAGAAGAGGCACTTGATATTTTCGAAGATATAACAGATAAGGATATTGTTTCCTGGAACACACTGATTGTAGGTTATGCTAGGCATGGATTTGGTAAAGAGGCTTTAGCTGTTTTTGAGTCAATGAAGATGACAATCAAGCCTGATGAAGTCACGCTGGTATGGAAGTTCTCTAAAACTTCTATAAGTGTAATTTGA

mRNA sequence

ATGGTAACTGGGTATGCTCAGAGTGGCAATATTGATCAAGCCAGGATTCTGTTTGATGAGATGCCTCAACGTGACTGTATATCATGGGCAGCTATGATCGCCGGCTATGCCCAAAGCAGCCAGAGTGAAGAGGCCTTGCAGCTCTTTATTATGATGAAAAGAAATGGAGAAAGGTTAAATAGATCTGCGTTGACATGTGCATTGAGCTCGTGTGCAGAGATTGCGGCTTTCGAGTTAGGGAAACAGCTTCATGGACGGCTAATTAAGGCAGGATTCCAAACTGGGTATTATGTGGGAAATGCTCTTTTAGCCATGTATAGCAAATGTGGAAGTATAGAAGAGGCACTTGATATTTTCGAAGATATAACAGATAAGGATATTGTTTCCTGGAACACACTGATTGTAGGTTATGCTAGGCATGGATTTGGTAAAGAGGCTTTAGCTGTTTTTGAGTCAATGAAGATGACAATCAAGCCTGATGAAGTCACGCTGGTATGGAAGTTCTCTAAAACTTCTATAAGTGTAATTTGA

Coding sequence (CDS)

ATGGTAACTGGGTATGCTCAGAGTGGCAATATTGATCAAGCCAGGATTCTGTTTGATGAGATGCCTCAACGTGACTGTATATCATGGGCAGCTATGATCGCCGGCTATGCCCAAAGCAGCCAGAGTGAAGAGGCCTTGCAGCTCTTTATTATGATGAAAAGAAATGGAGAAAGGTTAAATAGATCTGCGTTGACATGTGCATTGAGCTCGTGTGCAGAGATTGCGGCTTTCGAGTTAGGGAAACAGCTTCATGGACGGCTAATTAAGGCAGGATTCCAAACTGGGTATTATGTGGGAAATGCTCTTTTAGCCATGTATAGCAAATGTGGAAGTATAGAAGAGGCACTTGATATTTTCGAAGATATAACAGATAAGGATATTGTTTCCTGGAACACACTGATTGTAGGTTATGCTAGGCATGGATTTGGTAAAGAGGCTTTAGCTGTTTTTGAGTCAATGAAGATGACAATCAAGCCTGATGAAGTCACGCTGGTATGGAAGTTCTCTAAAACTTCTATAAGTGTAATTTGA

Protein sequence

MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLNRSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFEDITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTSISVI
Homology
BLAST of Cp4.1LG04g13930 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-58
Identity = 109/173 (63.01%), Postives = 138/173 (79.77%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           M+TGYAQ G I +A+ LFD+MP+RD +SWAAMIAGY+QS  S EAL+LF+ M+R G RLN
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RS+ + ALS+CA++ A ELGKQLHGRL+K G++TG +VGNALL MY KCGSIEEA D+F+
Sbjct: 409 RSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK 468

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMT-IKPDEVTLVWKFSKTS 173
           ++  KDIVSWNT+I GY+RHGFG+ AL  FESMK   +KPD+ T+V   S  S
Sbjct: 469 EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521

BLAST of Cp4.1LG04g13930 vs. ExPASy Swiss-Prot
Match: Q56X05 (Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-34
Identity = 69/170 (40.59%), Postives = 110/170 (64.71%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           ++ GY   GN++QA  LF++MP +D ISW  MI GY+Q+ +  EA+ +F  M   G   +
Sbjct: 227 LINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPD 286

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
              ++  +S+CA +   E+GK++H   ++ GF    Y+G+AL+ MYSKCGS+E AL +F 
Sbjct: 287 EVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFF 346

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKM-TIKPDEVTLVWKFS 170
           ++  K++  WN++I G A HGF +EAL +F  M+M ++KP+ VT V  F+
Sbjct: 347 NLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFT 396

BLAST of Cp4.1LG04g13930 vs. ExPASy Swiss-Prot
Match: Q9FRI5 (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.3e-34
Identity = 71/166 (42.77%), Postives = 106/166 (63.86%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           +++GY  SG+I +A+++F EM +++ +SW  MI+G A++   EE L+LF  MKR G    
Sbjct: 357 LLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPC 416

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
             A + A+ SCA + A+  G+Q H +L+K GF +    GNAL+ MY+KCG +EEA  +F 
Sbjct: 417 DYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFR 476

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESM-KMTIKPDEVTLV 166
            +   D VSWN LI    +HG G EA+ V+E M K  I+PD +TL+
Sbjct: 477 TMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLL 522

BLAST of Cp4.1LG04g13930 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-33
Identity = 69/172 (40.12%), Postives = 112/172 (65.12%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           M++GYA + +   AR++F +M +R+ +SW A+IAGY Q+ ++EEAL LF ++KR      
Sbjct: 326 MISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPT 385

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAG--FQTG----YYVGNALLAMYSKCGSIEE 120
             +    L +CA++A   LG Q H  ++K G  FQ+G     +VGN+L+ MY KCG +EE
Sbjct: 386 HYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445

Query: 121 ALDIFEDITDKDIVSWNTLIVGYARHGFGKEALAVF-ESMKMTIKPDEVTLV 166
              +F  + ++D VSWN +I+G+A++G+G EAL +F E ++   KPD +T++
Sbjct: 446 GYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMI 497

BLAST of Cp4.1LG04g13930 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.7e-33
Identity = 71/166 (42.77%), Postives = 105/166 (63.25%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           + T Y++   I+ AR LFDE P++   SW AMI+GY Q+  +E+A+ LF  M+++    N
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
              +TC LS+CA++ A  LGK +H  +    F++  YV  AL+ MY+KCGSI EA  +F+
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVF-ESMKMTIKPDEVTLV 166
            +T K+ V+WNT+I GY  HG G+EAL +F E +   I P  VT +
Sbjct: 480 LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFL 525

BLAST of Cp4.1LG04g13930 vs. NCBI nr
Match: KAG7021643.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 345 bits (886), Expect = 8.29e-115
Identity = 173/176 (98.30%), Postives = 174/176 (98.86%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN
Sbjct: 345 MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 404

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RSAL CALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMY KCGSIEEALDIFE
Sbjct: 405 RSALACALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYCKCGSIEEALDIFE 464

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTSISVI 176
           DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTSIS+I
Sbjct: 465 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTSISII 520

BLAST of Cp4.1LG04g13930 vs. NCBI nr
Match: XP_023530672.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330 bits (846), Expect = 7.09e-106
Identity = 167/172 (97.09%), Postives = 167/172 (97.09%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN
Sbjct: 345 MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 404

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE
Sbjct: 405 RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 464

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTS 172
           DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLV   S  S
Sbjct: 465 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVGVLSACS 516

BLAST of Cp4.1LG04g13930 vs. NCBI nr
Match: XP_022933912.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata])

HSP 1 Score: 327 bits (838), Expect = 1.10e-104
Identity = 165/172 (95.93%), Postives = 166/172 (96.51%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMM+RNGERLN
Sbjct: 345 MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMRRNGERLN 404

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMY KCGSIEEALDIFE
Sbjct: 405 RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYCKCGSIEEALDIFE 464

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTS 172
           DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLV   S  S
Sbjct: 465 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVGVLSACS 516

BLAST of Cp4.1LG04g13930 vs. NCBI nr
Match: KAG6587679.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 326 bits (836), Expect = 2.17e-104
Identity = 165/172 (95.93%), Postives = 165/172 (95.93%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN
Sbjct: 345 MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 404

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RSAL CALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMY KCGSIEEALDIFE
Sbjct: 405 RSALACALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYCKCGSIEEALDIFE 464

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTS 172
           DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLV   S  S
Sbjct: 465 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVGVLSACS 516

BLAST of Cp4.1LG04g13930 vs. NCBI nr
Match: XP_023001422.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima])

HSP 1 Score: 321 bits (823), Expect = 1.86e-102
Identity = 161/172 (93.60%), Postives = 163/172 (94.77%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN
Sbjct: 345 MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 404

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RSALTCAL SCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMY KCGSIEEA DIFE
Sbjct: 405 RSALTCALISCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYCKCGSIEEAFDIFE 464

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTS 172
           DITDKDIVSWNTLI GYARHGFGKEALAVFE+MKMT+KPDEVTLV   S  S
Sbjct: 465 DITDKDIVSWNTLIAGYARHGFGKEALAVFETMKMTVKPDEVTLVGVLSACS 516

BLAST of Cp4.1LG04g13930 vs. ExPASy TrEMBL
Match: A0A6J1F160 (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita moschata OX=3662 GN=LOC111441181 PE=3 SV=1)

HSP 1 Score: 327 bits (838), Expect = 5.31e-105
Identity = 165/172 (95.93%), Postives = 166/172 (96.51%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMM+RNGERLN
Sbjct: 345 MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMRRNGERLN 404

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMY KCGSIEEALDIFE
Sbjct: 405 RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYCKCGSIEEALDIFE 464

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTS 172
           DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLV   S  S
Sbjct: 465 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVGVLSACS 516

BLAST of Cp4.1LG04g13930 vs. ExPASy TrEMBL
Match: A0A6J1KGH5 (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita maxima OX=3661 GN=LOC111495558 PE=3 SV=1)

HSP 1 Score: 321 bits (823), Expect = 8.99e-103
Identity = 161/172 (93.60%), Postives = 163/172 (94.77%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN
Sbjct: 345 MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 404

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RSALTCAL SCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMY KCGSIEEA DIFE
Sbjct: 405 RSALTCALISCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYCKCGSIEEAFDIFE 464

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTS 172
           DITDKDIVSWNTLI GYARHGFGKEALAVFE+MKMT+KPDEVTLV   S  S
Sbjct: 465 DITDKDIVSWNTLIAGYARHGFGKEALAVFETMKMTVKPDEVTLVGVLSACS 516

BLAST of Cp4.1LG04g13930 vs. ExPASy TrEMBL
Match: A0A6J1BZX3 (pentatricopeptide repeat-containing protein At4g02750-like OS=Momordica charantia OX=3673 GN=LOC111007017 PE=3 SV=1)

HSP 1 Score: 309 bits (792), Expect = 3.56e-98
Identity = 152/172 (88.37%), Postives = 161/172 (93.60%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           MVTGYAQ+GNIDQARILFDEMPQRDCISWAAMIAGYAQS QSEEALQLFIMMKR+G + N
Sbjct: 345 MVTGYAQTGNIDQARILFDEMPQRDCISWAAMIAGYAQSGQSEEALQLFIMMKRDGGKFN 404

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RSALTCALSSCAEIAAFELGKQLHGRL+KAGFQTGYYVGNALLAMY KCGSIEEA D+FE
Sbjct: 405 RSALTCALSSCAEIAAFELGKQLHGRLVKAGFQTGYYVGNALLAMYCKCGSIEEAFDVFE 464

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTS 172
           DIT+KDIVSWNT+I GYARHGFGKEALAVFESMK+TIKPD+VTLV   S  S
Sbjct: 465 DITEKDIVSWNTMIAGYARHGFGKEALAVFESMKVTIKPDDVTLVGVLSACS 516

BLAST of Cp4.1LG04g13930 vs. ExPASy TrEMBL
Match: A0A0A0LV20 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G024980 PE=3 SV=1)

HSP 1 Score: 293 bits (751), Expect = 4.13e-92
Identity = 145/172 (84.30%), Postives = 154/172 (89.53%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           MVTGYAQ GNIDQA+ILFDEMPQRDCISWAAMI+GYAQS QSEEAL LFI MKR+G  LN
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RSAL CALSSCAEIAA ELGKQLHGRL+KAGFQTGY  GNALLAMY KCGSIEEA D+FE
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFE 464

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTS 172
           DIT+KDIVSWNT+I GYARHGFGKEALA+FESMKMTIKPD+VTLV   S  S
Sbjct: 465 DITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACS 516

BLAST of Cp4.1LG04g13930 vs. ExPASy TrEMBL
Match: A0A5A7UX79 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001170 PE=3 SV=1)

HSP 1 Score: 290 bits (742), Expect = 6.50e-91
Identity = 144/172 (83.72%), Postives = 154/172 (89.53%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           MVTGYAQ GNIDQA+ILFDEMPQRDCISWAAMI+GYAQS QSEEAL LFI MKR+G  LN
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIEMKRDGGILN 404

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RSAL  ALSSCAEIAA ELGKQLHGRL+KAGF+TGYY GNALLAMY KCGSIEEA D+FE
Sbjct: 405 RSALVGALSSCAEIAALELGKQLHGRLVKAGFETGYYAGNALLAMYCKCGSIEEAFDVFE 464

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTS 172
           DIT+KDIVSWNT+I GYARHGFGKEALA+FESMKMTIKPD+VTLV   S  S
Sbjct: 465 DITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACS 516

BLAST of Cp4.1LG04g13930 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 227.3 bits (578), Expect = 9.9e-60
Identity = 109/173 (63.01%), Postives = 138/173 (79.77%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           M+TGYAQ G I +A+ LFD+MP+RD +SWAAMIAGY+QS  S EAL+LF+ M+R G RLN
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
           RS+ + ALS+CA++ A ELGKQLHGRL+K G++TG +VGNALL MY KCGSIEEA D+F+
Sbjct: 409 RSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK 468

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMT-IKPDEVTLVWKFSKTS 173
           ++  KDIVSWNT+I GY+RHGFG+ AL  FESMK   +KPD+ T+V   S  S
Sbjct: 469 EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521

BLAST of Cp4.1LG04g13930 vs. TAIR 10
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 7.6e-36
Identity = 69/170 (40.59%), Postives = 110/170 (64.71%), Query Frame = 0

Query: 1    MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
            ++ GY   GN++QA  LF++MP +D ISW  MI GY+Q+ +  EA+ +F  M   G   +
Sbjct: 972  LINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPD 1031

Query: 61   RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
               ++  +S+CA +   E+GK++H   ++ GF    Y+G+AL+ MYSKCGS+E AL +F 
Sbjct: 1032 EVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFF 1091

Query: 121  DITDKDIVSWNTLIVGYARHGFGKEALAVFESMKM-TIKPDEVTLVWKFS 170
            ++  K++  WN++I G A HGF +EAL +F  M+M ++KP+ VT V  F+
Sbjct: 1092 NLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFT 1141

BLAST of Cp4.1LG04g13930 vs. TAIR 10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 145.6 bits (366), Expect = 3.8e-35
Identity = 71/166 (42.77%), Postives = 106/166 (63.86%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           +++GY  SG+I +A+++F EM +++ +SW  MI+G A++   EE L+LF  MKR G    
Sbjct: 357 LLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPC 416

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
             A + A+ SCA + A+  G+Q H +L+K GF +    GNAL+ MY+KCG +EEA  +F 
Sbjct: 417 DYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFR 476

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVFESM-KMTIKPDEVTLV 166
            +   D VSWN LI    +HG G EA+ V+E M K  I+PD +TL+
Sbjct: 477 TMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLL 522

BLAST of Cp4.1LG04g13930 vs. TAIR 10
Match: AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 144.4 bits (363), Expect = 8.5e-35
Identity = 69/172 (40.12%), Postives = 112/172 (65.12%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           M++GYA + +   AR++F +M +R+ +SW A+IAGY Q+ ++EEAL LF ++KR      
Sbjct: 326 MISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPT 385

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAG--FQTG----YYVGNALLAMYSKCGSIEE 120
             +    L +CA++A   LG Q H  ++K G  FQ+G     +VGN+L+ MY KCG +EE
Sbjct: 386 HYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445

Query: 121 ALDIFEDITDKDIVSWNTLIVGYARHGFGKEALAVF-ESMKMTIKPDEVTLV 166
              +F  + ++D VSWN +I+G+A++G+G EAL +F E ++   KPD +T++
Sbjct: 446 GYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMI 497

BLAST of Cp4.1LG04g13930 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 141.7 bits (356), Expect = 5.5e-34
Identity = 71/166 (42.77%), Postives = 105/166 (63.25%), Query Frame = 0

Query: 1   MVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLN 60
           + T Y++   I+ AR LFDE P++   SW AMI+GY Q+  +E+A+ LF  M+++    N
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419

Query: 61  RSALTCALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYSKCGSIEEALDIFE 120
              +TC LS+CA++ A  LGK +H  +    F++  YV  AL+ MY+KCGSI EA  +F+
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479

Query: 121 DITDKDIVSWNTLIVGYARHGFGKEALAVF-ESMKMTIKPDEVTLV 166
            +T K+ V+WNT+I GY  HG G+EAL +F E +   I P  VT +
Sbjct: 480 LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFL 525

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SY021.4e-5863.01Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX... [more]
Q56X051.1e-3440.59Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX... [more]
Q9FRI55.3e-3442.77Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX... [more]
Q9SIT71.2e-3340.12Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX... [more]
Q9SUH67.7e-3342.77Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
KAG7021643.18.29e-11598.30Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_023530672.17.09e-10697.09pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp... [more]
XP_022933912.11.10e-10495.93pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata][more]
KAG6587679.12.17e-10495.93Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_023001422.11.86e-10293.60pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1F1605.31e-10595.93pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita moschata... [more]
A0A6J1KGH58.99e-10393.60pentatricopeptide repeat-containing protein At4g02750-like OS=Cucurbita maxima O... [more]
A0A6J1BZX33.56e-9888.37pentatricopeptide repeat-containing protein At4g02750-like OS=Momordica charanti... [more]
A0A0A0LV204.13e-9284.30DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G0249... [more]
A0A5A7UX796.50e-9183.72Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT4G02750.19.9e-6063.01Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G06150.17.6e-3640.59basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT1G25360.13.8e-3542.77Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G13600.18.5e-3540.12Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G30700.15.5e-3442.77Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 27..56
e-value: 8.1E-7
score: 28.9
coord: 1..26
e-value: 4.8E-4
score: 20.2
coord: 100..126
e-value: 5.7E-4
score: 20.0
coord: 128..154
e-value: 6.2E-8
score: 32.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 27..60
e-value: 6.3E-6
score: 24.0
coord: 128..154
e-value: 4.0E-6
score: 24.7
coord: 100..128
e-value: 4.7E-4
score: 18.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 126..156
score: 10.007725
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 25..59
score: 10.533867
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 77..171
e-value: 1.6E-19
score: 71.9
coord: 1..76
e-value: 9.2E-18
score: 66.2
NoneNo IPR availablePANTHERPTHR24015:SF1812PENTATRICOPEPTIDE (PPR) REPEAT PROTEINcoord: 1..169
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g13930.1Cp4.1LG04g13930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding