Cp4.1LG04g13880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g13880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	MRP-S28 domain-containing protein
Location	Cp4.1LG04: 11250098 .. 11254133 (-)
RNA-Seq Expression	Cp4.1LG04g13880
Synteny	Cp4.1LG04g13880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGATTCAGAAACTCAGCCATGGAACAATTCTTCATCTCATAGTCCTATCAATTTGAGTAACGGAAAAAAAAAAATGAAGTCAAAAGCCAAAATCCAATGTGTTAATTGTTTACTCACAGAAGCAAATTCATGGCCAGGAAGAGTCTCGCCGATCTGCATCATCGCTGAGCCCAAATTGCACGGTGGTCTCTGCTGCAATAGTTCACCAACCTCCCCTGCCTTCGCCATCGCGGTAGACTGATCCTCCGCAGTGACAAAAGGCAAAATCGGCGCCTCACCCCATCCGACGCACCCATTACTCAACTCGATCCTTATCGCTACGTTCTCCACCATTTCAAGCCTCGAAGACGCAATCGTAAACGGCTCAAACAATGGAACATTCAGTGCCCTACTTTCTGCTCTCTGCACATTCACTGTGAACGTTTCCATCAAATTCTTGAACCCGAAGCTCATTCCTGACTCGAACGGTACTGTCGCCACCTTCATTTTCACACACAGCAGCGAAATGCGTATAGATGATTTCTCCTTCCGGTTGCTTCGAAAGTCGAATAATGGACAGTATCTGGACGCAGTATCGGATTCCAATTGCATAAAGAACCCAGTGGAACTCATGAGAATGTTCTGAAGGGGATTTGAATGGTGAATTTGGGGACTTTGATAGCCGTCGCTGTTCAACGACTGGATCGCGACGGAGTAAGCAACGAACCGGCTTTCTCATTGTCGCTTATGGGCAAACAAATCGCAGTAACAATTCATTTCTCGCTCCAATTTTTTAAATTACTTATTTTAGAACTAATTTTTTTTAGGAAGCTTAATTGTTGATTAAACATAAGAATAAGCTTAAAATTTTCCTTATCCAAAAAAAGATTAAATCTTTGTTATGTTTGGAATAGCGCGGTAGCATTTTGGCTTTGAAAGCCGGCAAAATCCTCACCCTCCGAAATGAGAACAACCATAAACCCTAGAGGACAGCCATGAAATGGACTCTATTGAGAAACCTTTCTCTCAGAGCTCGGAACCATCCATCTTCTTTATTCTCATACTTACAAGCCCAATGCCTTTCCTCCATGCTTGGTTTCATCCCCAGCCAGGTCTCGATTCAGGCTCTTCTCGTCCGGCAACGATTCGCCGTCGAAGGAAGATTCTGTAAGTGCTCCCGAAGCGAATTTGCTGCCGGTTCAGAAGAAAGGCGTATGTTTGGACGTACAAGATGTGAGCAACAAAGGTGTTTATTATTATTTTTTTTTTTCCAAATCCGAACGTTCTACTTTCCTATTGATTTCTGCGATTGAACTTAGGACTACGAAATTGATAATCCATCTTTGTATGATGTGAAATTTTGTAGGTTTTGTTCGTAGTTAGGGAAATGCTGGAAATCAATCACTTTTTTGGCTGATTTGTCTTCATGATCTAATGCTTCGCATTGAGATTGGGTGAAATTTTGAATTTACGTTTTTTTTTCTTACTGCAATTGATGTCTTGAGCGATGATCTCTGGATCTAACGTTGCTGCCGCGGTATTTGGATTTTTTTCAATGCGACTATATCATGAATCATGGGAGCTCAAAATTGTAATATTTTCCATTTGATGACCCATAAAATTTCTGCCCAGAATTGAAAATGAAGATAGACAAGTACTTCAAAGGTGATGAGGAGGCGCTACCATCAATTCTTGAAGCTATTCTTCAGAGGAAATTGGGTGGAAAGCATGAGGATACAGATGATGAACTTGATGAAGAACTACGAATGCAACCATGGGATGATGTGAAGGACAAAGAGTTTGAATCTGATTTTGAAGAATTGTAGGAGACAGACGAAGAGATTGATGATCTTTACAATGCTAGGGATATAGTTATGAAAAAAATGGTAAAGGATGAATACTTCAACATGGATGACAAAAAATGGGATGAGCTTGTTGAGGATGGCATTAAGCATGGGATCCTGAGGGACACCAAGGAGTGTGAACAGATTTTGGAGGACATGCTTAGTTGGGACAAGCTCCTTCCAGGTTTGCCCCTTGTCTTTACATGCTTGCTTTGTCCGTTCTCGTGTTACAATTGGCTTATTTATTCTTTCTGGACTAATTTTTTTGCGAGAGGCGCATCTGCCCCGTTGCTCTGCTCATGAATTCGGTGGGTATGGTAAAAAAACTAATGAAACGAAACTGCTGATGGATACCCTTAACCTCGAATTCTAGAAACATTATGATATCGTTTGAGCCATGTATGATGTATCTATCGCGTACTTAATATAAGTGATCCTTGGTTGGTATGTTGTCAGACAAATGTCTGTTTGTAATGTCATAGATTGCTTCACTTTCTATGAGATCCCGCATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGAGTGTGGAAACCTCTCCCTAGTAGATGAGTTTTAAAACCTTGAGGGGAAGTCCGGAAGGGAAAGTCCAAAGCGGACAATATCCGCTAGCGGTAGACTTGGGCTCTTACACTTAAGATATAAACACTCAATTATATTGTGTAATATCTTGAGTAAATTCTCTTTGAATAATATTTTTTCCCCTGTTTCTTGGTAATGAACTGTTCACTAGATGATACGAAGAAAAAATTAGAAGCAAAATACAACGAGCTAGGGGATTTGTGTGAAAAAGGGGAGCTTGAACCTGAAGAAGCTTACAATCAGTTTAAACAATTCGGAGATCAGATGGTGATGGAATATGGAAAGATGATGGAGGCAGAAGGTCCCCCCAAGTTTGATGAAACAGATGTGGCAGATAACAAAAAAGACTTGGATGAGCCGCCAGGTGAAGGGCCAATTCTTAGGTGGCAAACAAGGGTTGTGTTTGAACCAGGCGGGGATGCATGGCATCCCAAAAACCGAAAAGTGAAATGATCTGTTACTGTGAAGGAGCTTGGTTTATCAAACTACCAATTCTGTCGACTAAGGGAATTGGTTGGCAAGCGTTATCATCCTGGAAAGATGAGCTTATCATCACTAGTCAGAGGTAATTTCAACTATACTATATTCTAATGTTTAATTCGGTTGATACTTCTCCTAGAACTGCTACGGTCTGTGTATCAACCCAAACCCTCCACTAGTAGATATTGTCCTCTTTGGGCTCTTTCGAACTTCTCTTCAAGTTTTTTAGAACTCATCTGTTACAGATAGGTTTCACACTATACAAAAATTGTTCCGTTTTTCTCTCCAATCGACGTAGGATCTCACCACCAATGTTGGCTGTTATAGTATCTTACTTTGACACATCTGAGTAGGCAAGCACATGTCACTGACAAATCGAACAGGACAGATCACCACACCTTGTACTCGTTTATTCATTCCGTCGACTATAAAAAATTCATTATGGTTCCTCTCTCTTCATTTTCTGCATGTGAGGTCGAAAAACAGTTTTACTTCTCTCTCTCTCTCTGTCAAGAAAGGCATATTGACCATGAACCTCTCTCAGATCTTGCTGAACTGGCGCTGTCTTTGTTTAAATTTGTATTAGCTTCTGACTTCAATTGTATTTCTCAGGTTTGAACACAGAGAGGAAAATAGAAAGGATTGCCTTGGGACACTTTTTTCTCTAATTGAGGAAGCTGGGAAAACCAACAAACTTGTAGAGGATGCTCGAACTTCATATGTGAAGGAGAGGCTGCGTGTGAATCCCCAGTTTATGGAGAGGCTGCGTGCTAAGAAAATGGGCTTGCAACCATCATACCCTTAATCTGCTTCATTGTTTGATTCGTGATGCTGTTGAAAAGAAGAATACACATTTGGCTCAACACTTTTGGTGAAGAAGTATTTTTTTCATTGGTCTTTACAAAAAAGTTACAAAATTCTAGAACATGTCCATCAATTTTGATTTTGTCATCAATAGCGATGTTTTGACCACTTGGAACTATCTTTACGACTATAGGAACTAGGAATTAATAATGTATCTTAATTATGTACTTTTCTATTGTGCTTTTTCATGAACATATATGGAAATTCTAAATGAATGAGAGGTTCCCAAGAGAGGAATACAAATCTCCAAAACTCCGATCCTTTC

mRNA sequence

TGGATTCAGAAACTCAGCCATGGAACAATTCTTCATCTCATAGTCCTATCAATTTGAGTAACGGAAAAAAAAAAATGAAGTCAAAAGCCAAAATCCAATGTGTTAATTGTTTACTCACAGAAGCAAATTCATGGCCAGGAAGAGTCTCGCCGATCTGCATCATCGCTGAGCCCAAATTGCACGGTGGTCTCTGCTGCAATAGTTCACCAACCTCCCCTGCCTTCGCCATCGCGGTAGACTGATCCTCCGCAGTGACAAAAGGCAAAATCGGCGCCTCACCCCATCCGACGCACCCATTACTCAACTCGATCCTTATCGCTACGTTCTCCACCATTTCAAGCCTCGAAGACGCAATCGTAAACGGCTCAAACAATGGAACATTCAGTGCCCTACTTTCTGCTCTCTGCACATTCACTGTGAACGTTTCCATCAAATTCTTGAACCCGAAGCTCATTCCTGACTCGAACGGTACTGTCGCCACCTTCATTTTCACACACAGCAGCGAAATGCGTATAGATGATTTCTCCTTCCGGTTGCTTCGAAAGTCGAATAATGGACAGTATCTGGACGCAGTATCGGATTCCAATTGCATAAAGAACCCAGTGGAACTCATGAGAATGTTCTGAAGGGGATTTGAATGGTGAATTTGGGGACTTTGATAGCCGTCGCTGTTCAACGACTGGATCGCGACGGAGTAAGCAACGAACCGGCTTTCTCATTGTCGCTTATGGGCAAACAAATCGCAGTAACAATTCATTTCTCGCTCCAATTTTTTAAATTACTTATTTTAGAACTAATTTTTTTTAGGAAGCTTAATTGTTGATTAAACATAAGAATAAGCTTAAAATTTTCCTTATCCAAAAAAAGATTAAATCTTTGTTATGTTTGGAATAGCGCGGTAGCATTTTGGCTTTGAAAGCCGGCAAAATCCTCACCCTCCGAAATGAGAACAACCATAAACCCTAGAGGACAGCCATGAAATGGACTCTATTGAGAAACCTTTCTCTCAGAGCTCGGAACCATCCATCTTCTTTATTCTCATACTTACAAGCCCAATGCCTTTCCTCCATGCTTGGTTTCATCCCCAGCCAGGTCTCGATTCAGGCTCTTCTCGTCCGGCAACGATTCGCCGTCGAAGGAAGATTCTGTAAGTGCTCCCGAAGCGAATTTGCTGCCGGTTCAGAAGAAAGGCGTATGTTTGGACGTACAAGATGTGAGCAACAAAGGTTTTGTTCGTAGTTAGGGAAATGCTGGAAATCAATCACTTTTTTGGCTGATTTGTCTTCATGATCTAATGCTTCGCATTGAGATTGGGTGAAATTTTGAATTTACGTTTTTTTTTCTTACTGCAATTGATGTCTTGAGCGATGATCTCTGGATCTAACGTTGCTGCCGCGGTATTTGGATTTTTTTCAATGCGACTATATCATGAATCATGGGAGCTCAAAATTGTAATATTTTCCATTTGATGACCCATAAAATTTCTGCCCAGAATTGAAAATGAAGATAGACAAGTACTTCAAAGGTGATGAGGAGGCGCTACCATCAATTCTTGAAGCTATTCTTCAGAGGAAATTGGGTGGAAAGCATGAGGATACAGATGATGAACTTGATGAAGAACTACGAATGCAACCATGGGATGATGTGAAGGACAAAGAGTTTGAATCTGATTTTGAAGAATTGTAGGAGACAGACGAAGAGATTGATGATCTTTACAATGCTAGGGATATAGTTATGAAAAAAATGGTAAAGGATGAATACTTCAACATGGATGACAAAAAATGGGATGAGCTTGTTGAGGATGGCATTAAGCATGGGATCCTGAGGGACACCAAGGAGTGTGAACAGATTTTGGAGGACATGCTTAGTTGGGACAAGCTCCTTCCAGATGATACGAAGAAAAAATTAGAAGCAAAATACAACGAGCTAGGGGATTTGTGTGAAAAAGGGGAGCTTGAACCTGAAGAAGCTTACAATCAGTTTAAACAATTCGGAGATCAGATGGTGATGGAATATGGAAAGATGATGGAGGCAGAAGGTCCCCCCAAGTTTGATGAAACAGATGTGGCAGATAACAAAAAAGACTTGGATGAGCCGCCAGGAGCTTGGTTTATCAAACTACCAATTCTGTCGACTAAGGGAATTGGTTGGCAAGCGTTATCATCCTGGAAAGATGAGCTTATCATCACTAGTCAGAGGTTTGAACACAGAGAGGAAAATAGAAAGGATTGCCTTGGGACACTTTTTTCTCTAATTGAGGAAGCTGGGAAAACCAACAAACTTGTAGAGGATGCTCGAACTTCATATGTGAAGGAGAGGCTGCGTGTGAATCCCCAGTTTATGGAGAGGCTGCGTGCTAAGAAAATGGGCTTGCAACCATCATACCCTTAATCTGCTTCATTGTTTGATTCGTGATGCTGTTGAAAAGAAGAATACACATTTGGCTCAACACTTTTGGTGAAGAAGTATTTTTTTCATTGGTCTTTACAAAAAAGTTACAAAATTCTAGAACATGTCCATCAATTTTGATTTTGTCATCAATAGCGATGTTTTGACCACTTGGAACTATCTTTACGACTATAGGAACTAGGAATTAATAATGTATCTTAATTATGTACTTTTCTATTGTGCTTTTTCATGAACATATATGGAAATTCTAAATGAATGAGAGGTTCCCAAGAGAGGAATACAAATCTCCAAAACTCCGATCCTTTC

Coding sequence (CDS)

ATGAAAAAAATGGTAAAGGATGAATACTTCAACATGGATGACAAAAAATGGGATGAGCTTGTTGAGGATGGCATTAAGCATGGGATCCTGAGGGACACCAAGGAGTGTGAACAGATTTTGGAGGACATGCTTAGTTGGGACAAGCTCCTTCCAGATGATACGAAGAAAAAATTAGAAGCAAAATACAACGAGCTAGGGGATTTGTGTGAAAAAGGGGAGCTTGAACCTGAAGAAGCTTACAATCAGTTTAAACAATTCGGAGATCAGATGGTGATGGAATATGGAAAGATGATGGAGGCAGAAGGTCCCCCCAAGTTTGATGAAACAGATGTGGCAGATAACAAAAAAGACTTGGATGAGCCGCCAGGAGCTTGGTTTATCAAACTACCAATTCTGTCGACTAAGGGAATTGGTTGGCAAGCGTTATCATCCTGGAAAGATGAGCTTATCATCACTAGTCAGAGGTTTGAACACAGAGAGGAAAATAGAAAGGATTGCCTTGGGACACTTTTTTCTCTAATTGAGGAAGCTGGGAAAACCAACAAACTTGTAGAGGATGCTCGAACTTCATATGTGAAGGAGAGGCTGCGTGTGAATCCCCAGTTTATGGAGAGGCTGCGTGCTAAGAAAATGGGCTTGCAACCATCATACCCTTAA

Protein sequence

MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEAKYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDEPPGAWFIKLPILSTKGIGWQALSSWKDELIITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFMERLRAKKMGLQPSYP

Homology

[Close]

BLAST of Cp4.1LG04g13880 vs. NCBI nr
Match: XP_022933107.1 (uncharacterized protein LOC111439871 [Cucurbita moschata] >XP_022933111.1 uncharacterized protein LOC111439871 [Cucurbita moschata] >XP_022933119.1 uncharacterized protein LOC111439871 [Cucurbita moschata])

HSP 1 Score: 343 bits (880), Expect = 9.29e-116
Identity = 190/258 (73.64%), Postives = 202/258 (78.29%), Query Frame = 0


Query: 1   MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEA 60
           MKKMVKDEYFNMDDKKWDELVED IKHGIL+DTKECEQILEDMLSWDKLLPDD KK++EA
Sbjct: 79  MKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILEDMLSWDKLLPDDMKKQVEA 138

Query: 61  KYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDE 120
           K+NELGDLCEKGELEPEEAYNQFKQF DQMVMEYGKMMEAEGPPKFD TDVADNKKDLDE
Sbjct: 139 KFNELGDLCEKGELEPEEAYNQFKQFEDQMVMEYGKMMEAEGPPKFDGTDVADNKKDLDE 198

Query: 121 PPG------------------AWF-----IKLPILSTKGIGWQALSSW------------ 180
           PPG                  AW      +KL + + KG+G   LS++            
Sbjct: 199 PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSV-TVKGLG---LSNYQFRRLRELVGKR 258

Query: 181 ----KDELI-ITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNP 218
               KDEL   TS+RFEHREENRKDCL TLFSLIEEAGK NKLVEDARTSYVKERLRVNP
Sbjct: 259 YHPGKDELTSFTSERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNP 318

[Close]

BLAST of Cp4.1LG04g13880 vs. NCBI nr
Match: KAG6587663.1 (hypothetical protein SDJN03_16228, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335 bits (858), Expect = 1.51e-112
Identity = 180/230 (78.26%), Postives = 189/230 (82.17%), Query Frame = 0


Query: 1   MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEA 60
           MKKMVKDEYFNMDDKKWDELVEDGIKHGIL+DTKECEQILEDMLSWDKLLPDD KKK+EA
Sbjct: 103 MKKMVKDEYFNMDDKKWDELVEDGIKHGILKDTKECEQILEDMLSWDKLLPDDMKKKVEA 162

Query: 61  KYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDE 120
           K+NELGDLCEKGELEPEEA NQFK+F DQMVMEYGKMMEAEGPPKFDETDVADNKKDLD+
Sbjct: 163 KFNELGDLCEKGELEPEEACNQFKEFEDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDD 222

Query: 121 PPGAWFIKLPILSTKGIGWQAL-----SSWKDELIITSQ-------RFEHREENRKDCLG 180
           PPG      PIL      WQ        +W   +II  +       R  + EENRKDCLG
Sbjct: 223 PPGEG----PILR-----WQTRVVFEPGNWLASVIILGKMSLPSLVRGLNTEENRKDCLG 282

Query: 181 TLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFMERLRAKKMGLQPSYP 218
           TLFSLIEEAGK NKLVEDARTSYVKERLR NPQ MERLRAKKMGLQPSYP
Sbjct: 283 TLFSLIEEAGKANKLVEDARTSYVKERLRANPQSMERLRAKKMGLQPSYP 323

[Close]

BLAST of Cp4.1LG04g13880 vs. NCBI nr
Match: KAG7023307.1 (hypothetical protein SDJN02_14332, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335 bits (859), Expect = 1.59e-112
Identity = 181/252 (71.83%), Postives = 194/252 (76.98%), Query Frame = 0


Query: 1   MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEA 60
           MKKMVK+EYFNMDDKKWDELVEDGIKHGIL+DTKECE+ILEDMLSWDKLLPDD KKK+EA
Sbjct: 79  MKKMVKNEYFNMDDKKWDELVEDGIKHGILKDTKECEEILEDMLSWDKLLPDDMKKKVEA 138

Query: 61  KYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDE 120
           K+NELGDLCEKGELEPEEAYN FK+F DQMVMEYGKMMEAEGPPKFDETDV DNKKDLD+
Sbjct: 139 KFNELGDLCEKGELEPEEAYNLFKEFEDQMVMEYGKMMEAEGPPKFDETDVPDNKKDLDD 198

Query: 121 PPGA-----WFIKLPILSTKGIGWQ---------------ALSSW--------------- 180
           PPG      W  ++ + +  G  W                 LS +               
Sbjct: 199 PPGEGPILRWQTRV-VFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHP 258

Query: 181 -KDELIITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFME 216
            KDEL ITS+RFEHREENRKDCL TLFSLIEEAGK NKLVEDARTSYVKERLR NPQFME
Sbjct: 259 GKDELTITSERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRANPQFME 318

[Close]

BLAST of Cp4.1LG04g13880 vs. NCBI nr
Match: XP_022921942.1 (uncharacterized protein LOC111430048 [Cucurbita moschata])

HSP 1 Score: 335 bits (859), Expect = 2.53e-111
Identity = 181/252 (71.83%), Postives = 194/252 (76.98%), Query Frame = 0


Query: 1   MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEA 60
           MKKMVK+EYFNMDDKKWDELVEDGIKHGIL+DTKECE+ILEDMLSWDKLLPDD KKK+EA
Sbjct: 164 MKKMVKNEYFNMDDKKWDELVEDGIKHGILKDTKECEEILEDMLSWDKLLPDDMKKKVEA 223

Query: 61  KYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDE 120
           K+NELGDLCEKGELEPEEAYN FK+F DQMVMEYGKMMEAEGPPKFDETDV DNKKDLD+
Sbjct: 224 KFNELGDLCEKGELEPEEAYNLFKEFEDQMVMEYGKMMEAEGPPKFDETDVPDNKKDLDD 283

Query: 121 PPGA-----WFIKLPILSTKGIGWQ---------------ALSSW--------------- 180
           PPG      W  ++ + +  G  W                 LS +               
Sbjct: 284 PPGEGPILRWQTRV-VFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHP 343

Query: 181 -KDELIITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFME 216
            KDEL ITS+RFEHREENRKDCL TLFSLIEEAGK NKLVEDARTSYVKERLR NPQFME
Sbjct: 344 GKDELTITSERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRANPQFME 403

[Close]

BLAST of Cp4.1LG04g13880 vs. NCBI nr
Match: KAG6589616.1 (hypothetical protein SDJN03_15039, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 333 bits (854), Expect = 1.45e-110
Identity = 180/252 (71.43%), Postives = 194/252 (76.98%), Query Frame = 0


Query: 1   MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEA 60
           MKKMVK+EYFNMDDKKWDELVEDGIKHGIL+DTKECE+ILEDMLSWDKLLPDD KKK+EA
Sbjct: 164 MKKMVKNEYFNMDDKKWDELVEDGIKHGILKDTKECEEILEDMLSWDKLLPDDMKKKVEA 223

Query: 61  KYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDE 120
           K+NELGDLCEKGELEPEEAYN FK+F DQMVMEYGKMMEAEGPPKFDETDV DNKKDLD+
Sbjct: 224 KFNELGDLCEKGELEPEEAYNLFKEFEDQMVMEYGKMMEAEGPPKFDETDVPDNKKDLDD 283

Query: 121 PPGA-----WFIKLPILSTKGIGWQ---------------ALSSW--------------- 180
           PPG      W  ++ + +  G  W                 LS +               
Sbjct: 284 PPGEGPILRWQTRV-VFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHP 343

Query: 181 -KDELIITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFME 216
            K+EL ITS+RFEHREENRKDCL TLFSLIEEAGK NKLVEDARTSYVKERLR NPQFME
Sbjct: 344 GKNELTITSERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRANPQFME 403

[Close]

BLAST of Cp4.1LG04g13880 vs. ExPASy TrEMBL
Match: A0A6J1EY83 (uncharacterized protein LOC111439871 OS=Cucurbita moschata OX=3662 GN=LOC111439871 PE=4 SV=1)

HSP 1 Score: 343 bits (880), Expect = 4.50e-116
Identity = 190/258 (73.64%), Postives = 202/258 (78.29%), Query Frame = 0


Query: 1   MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEA 60
           MKKMVKDEYFNMDDKKWDELVED IKHGIL+DTKECEQILEDMLSWDKLLPDD KK++EA
Sbjct: 79  MKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILEDMLSWDKLLPDDMKKQVEA 138

Query: 61  KYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDE 120
           K+NELGDLCEKGELEPEEAYNQFKQF DQMVMEYGKMMEAEGPPKFD TDVADNKKDLDE
Sbjct: 139 KFNELGDLCEKGELEPEEAYNQFKQFEDQMVMEYGKMMEAEGPPKFDGTDVADNKKDLDE 198

Query: 121 PPG------------------AWF-----IKLPILSTKGIGWQALSSW------------ 180
           PPG                  AW      +KL + + KG+G   LS++            
Sbjct: 199 PPGEGPILRWQTRVVFAPGGDAWHPKNRKVKLSV-TVKGLG---LSNYQFRRLRELVGKR 258

Query: 181 ----KDELI-ITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNP 218
               KDEL   TS+RFEHREENRKDCL TLFSLIEEAGK NKLVEDARTSYVKERLRVNP
Sbjct: 259 YHPGKDELTSFTSERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRVNP 318

[Close]

BLAST of Cp4.1LG04g13880 vs. ExPASy TrEMBL
Match: A0A6J1E1S5 (uncharacterized protein LOC111430048 OS=Cucurbita moschata OX=3662 GN=LOC111430048 PE=4 SV=1)

HSP 1 Score: 335 bits (859), Expect = 1.23e-111
Identity = 181/252 (71.83%), Postives = 194/252 (76.98%), Query Frame = 0


Query: 1   MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEA 60
           MKKMVK+EYFNMDDKKWDELVEDGIKHGIL+DTKECE+ILEDMLSWDKLLPDD KKK+EA
Sbjct: 164 MKKMVKNEYFNMDDKKWDELVEDGIKHGILKDTKECEEILEDMLSWDKLLPDDMKKKVEA 223

Query: 61  KYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDE 120
           K+NELGDLCEKGELEPEEAYN FK+F DQMVMEYGKMMEAEGPPKFDETDV DNKKDLD+
Sbjct: 224 KFNELGDLCEKGELEPEEAYNLFKEFEDQMVMEYGKMMEAEGPPKFDETDVPDNKKDLDD 283

Query: 121 PPGA-----WFIKLPILSTKGIGWQ---------------ALSSW--------------- 180
           PPG      W  ++ + +  G  W                 LS +               
Sbjct: 284 PPGEGPILRWQTRV-VFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHP 343

Query: 181 -KDELIITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFME 216
            KDEL ITS+RFEHREENRKDCL TLFSLIEEAGK NKLVEDARTSYVKERLR NPQFME
Sbjct: 344 GKDELTITSERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRANPQFME 403

[Close]

BLAST of Cp4.1LG04g13880 vs. ExPASy TrEMBL
Match: A0A6J1JL06 (uncharacterized protein LOC111485553 OS=Cucurbita maxima OX=3661 GN=LOC111485553 PE=4 SV=1)

HSP 1 Score: 332 bits (850), Expect = 2.83e-110
Identity = 179/252 (71.03%), Postives = 193/252 (76.59%), Query Frame = 0


Query: 1   MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEA 60
           MKKMVK+EYFNMDDKKWDELVEDGIKHG L+DTKECE+ILEDMLSWDKLLPDD KKK+EA
Sbjct: 164 MKKMVKNEYFNMDDKKWDELVEDGIKHGFLKDTKECEEILEDMLSWDKLLPDDMKKKVEA 223

Query: 61  KYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDE 120
           K+NELGDLCEKGELEPEEAYN FK+F DQMVMEYGKMMEAEGPPKFDETDV DNKKDLD+
Sbjct: 224 KFNELGDLCEKGELEPEEAYNLFKEFEDQMVMEYGKMMEAEGPPKFDETDVPDNKKDLDD 283

Query: 121 PPGA-----WFIKLPILSTKGIGWQ---------------ALSSW--------------- 180
           PPG      W  ++ + +  G  W                 LS +               
Sbjct: 284 PPGEGPILRWQTRV-VFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHP 343

Query: 181 -KDELIITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFME 216
            K+EL ITS+RFEHREENRKDCL TLFSLIEEAGK NKLVEDARTSYVKERLR NPQFME
Sbjct: 344 GKNELTITSERFEHREENRKDCLRTLFSLIEEAGKANKLVEDARTSYVKERLRANPQFME 403

[Close]

BLAST of Cp4.1LG04g13880 vs. ExPASy TrEMBL
Match: A0A6J1C1G2 (uncharacterized protein LOC111007394 OS=Momordica charantia OX=3673 GN=LOC111007394 PE=4 SV=1)

HSP 1 Score: 329 bits (844), Expect = 2.22e-109
Identity = 177/254 (69.69%), Postives = 192/254 (75.59%), Query Frame = 0


Query: 1   MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEA 60
           MKKMVKDEYFNMDDKKWDELVEDGIKHGIL+DTKECE ILEDMLSWDKLLPD+ KKK+E 
Sbjct: 164 MKKMVKDEYFNMDDKKWDELVEDGIKHGILKDTKECEAILEDMLSWDKLLPDEMKKKVEE 223

Query: 61  KYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDE 120
           K+NELGD+CEKGELEPEEAY+ FK+F DQMVMEYGKMMEAEGPPKFDETDV DNKKDLD+
Sbjct: 224 KFNELGDMCEKGELEPEEAYSMFKEFEDQMVMEYGKMMEAEGPPKFDETDVPDNKKDLDD 283

Query: 121 PPGA-----WFIKLPILSTKGIGWQ---------------ALSSW--------------- 180
           PPG      W  ++ + +  G  W                 LS +               
Sbjct: 284 PPGEGPILRWQTRV-VFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHP 343

Query: 181 -KDELIITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFME 218
            KDEL ITS+RFEHREENRKDCL TL+SLIEEAGK NKLVEDAR SYVKERLR NPQFME
Sbjct: 344 GKDELTITSERFEHREENRKDCLRTLYSLIEEAGKANKLVEDARASYVKERLRANPQFME 403

[Close]

BLAST of Cp4.1LG04g13880 vs. ExPASy TrEMBL
Match: A0A0D2TS37 (MRP-S28 domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_013G1693002 PE=4 SV=1)

HSP 1 Score: 298 bits (764), Expect = 1.48e-99
Identity = 152/226 (67.26%), Postives = 181/226 (80.09%), Query Frame = 0


Query: 1   MKKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEA 60
           +K+MVKDEYFNMDD+KWDE++++ ++HG L+DTKECE+ILEDMLSWDKLLPD+ KKK+E 
Sbjct: 26  VKRMVKDEYFNMDDQKWDEMIKEAVQHGYLKDTKECEEILEDMLSWDKLLPDEMKKKVEE 85

Query: 61  KYNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDE 120
           ++NELGD+CE+GELE EEAY QFK+F DQMVMEYGK+MEAEGPPKFDET V D KK+LD+
Sbjct: 86  RFNELGDMCERGELEVEEAYEQFKEFEDQMVMEYGKLMEAEGPPKFDETAVPDLKKNLDD 145

Query: 121 PPGA-----WFIKLPILS-----TKGIGWQALSSWKDELIITSQRFEHREENRKDCLGTL 180
           PPG      W  +L +        + +  +     KDEL ITS+RFEHREENRKDCL TL
Sbjct: 146 PPGEGPILRWQTRLGLSKHQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTL 205

Query: 181 FSLIEEAGKTNKLVEDARTSYVKERLRVNPQFMERLRAKKMGLQPS 216
           FSLIEEAGK NK+VE+ART YVK RLR NP FMERLRAK M LQ S
Sbjct: 206 FSLIEEAGKANKMVEEARTKYVKNRLRANPAFMERLRAKTMKLQES 251

[Close]

BLAST of Cp4.1LG04g13880 vs. TAIR 10
Match: AT3G18240.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 267.7 bits (683), Expect = 8.2e-72
Identity = 137/244 (56.15%), Postives = 171/244 (70.08%), Query Frame = 0


Query: 2   KKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEAK 61
           +KM K+E+FNMDDKKWD ++ +GI+HG L DTKECE+ILEDML WD+LLPDD KKK+EAK
Sbjct: 165 EKMRKNEFFNMDDKKWDHMIREGIQHGCLTDTKECEEILEDMLKWDQLLPDDLKKKVEAK 224

Query: 62  YNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDEP 121
           +NELGD+CE+GE+E E AY  FK+F D+MV++YG  MEAEGPP+F ETD +D   DLD+P
Sbjct: 225 FNELGDMCERGEIEAEAAYELFKEFEDEMVIQYGDQMEAEGPPQFGETDASDRNTDLDDP 284

Query: 122 PG------------------AWF-----IKLPILSTKGIG-------------WQALSSW 181
           PG                  AW      +K+ + + K +G              +   S 
Sbjct: 285 PGKGPILRWQSRIVFAPGGDAWHPKNRKVKMSV-TVKELGLSKHQAKRLRELVGKRYHSG 344

Query: 182 KDELIITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFMER 210
           KDEL ITS+RFEHREENRKDCL TL+ LIEEAGK NK+ ED RTSYVK+RLR NP FM++
Sbjct: 345 KDELTITSERFEHREENRKDCLRTLYGLIEEAGKANKIAEDIRTSYVKQRLRANPAFMQK 404

[Close]

BLAST of Cp4.1LG04g13880 vs. TAIR 10
Match: AT3G18240.2 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 267.7 bits (683), Expect = 8.2e-72
Identity = 137/244 (56.15%), Postives = 171/244 (70.08%), Query Frame = 0


Query: 2   KKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEAK 61
           +KM K+E+FNMDDKKWD ++ +GI+HG L DTKECE+ILEDML WD+LLPDD KKK+EAK
Sbjct: 165 EKMRKNEFFNMDDKKWDHMIREGIQHGCLTDTKECEEILEDMLKWDQLLPDDLKKKVEAK 224

Query: 62  YNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDEP 121
           +NELGD+CE+GE+E E AY  FK+F D+MV++YG  MEAEGPP+F ETD +D   DLD+P
Sbjct: 225 FNELGDMCERGEIEAEAAYELFKEFEDEMVIQYGDQMEAEGPPQFGETDASDRNTDLDDP 284

Query: 122 PG------------------AWF-----IKLPILSTKGIG-------------WQALSSW 181
           PG                  AW      +K+ + + K +G              +   S 
Sbjct: 285 PGKGPILRWQSRIVFAPGGDAWHPKNRKVKMSV-TVKELGLSKHQAKRLRELVGKRYHSG 344

Query: 182 KDELIITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFMER 210
           KDEL ITS+RFEHREENRKDCL TL+ LIEEAGK NK+ ED RTSYVK+RLR NP FM++
Sbjct: 345 KDELTITSERFEHREENRKDCLRTLYGLIEEAGKANKIAEDIRTSYVKQRLRANPAFMQK 404

[Close]

BLAST of Cp4.1LG04g13880 vs. TAIR 10
Match: AT4G21460.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-68
Identity = 132/244 (54.10%), Postives = 167/244 (68.44%), Query Frame = 0


Query: 2   KKMVKDEYFNMDDKKWDELVEDGIKHGILRDTKECEQILEDMLSWDKLLPDDTKKKLEAK 61
           +KM K E+FNMDD KWD ++ +GI+HG L DTK+CE+ILEDML WD+LLPDD KKK+EAK
Sbjct: 161 EKMRKKEFFNMDDNKWDHMIREGIQHGCLTDTKQCEEILEDMLKWDQLLPDDLKKKVEAK 220

Query: 62  YNELGDLCEKGELEPEEAYNQFKQFGDQMVMEYGKMMEAEGPPKFDETDVADNKKDLDEP 121
           +NELGD+CE+GE+E E AY  FK+F D+MV++YG  MEAEGPP+F ETD +D   DLD+P
Sbjct: 221 FNELGDMCERGEIEAEAAYELFKEFEDEMVIQYGDQMEAEGPPQFGETDTSDRNTDLDDP 280

Query: 122 PG------------------AWF-----IKLPILSTKGIG-------------WQALSSW 181
            G                  AW      +K+ + + K +G              +   S 
Sbjct: 281 SGKGPILRWQSRIVFAPGGDAWHPKNRKVKMSV-TVKELGLSNHQAKRLRELVGKRYHSG 340

Query: 182 KDELIITSQRFEHREENRKDCLGTLFSLIEEAGKTNKLVEDARTSYVKERLRVNPQFMER 210
           KDEL IT +RFEHREENRKDCL TL+ LIEEAGK NK+ ED RTSYVK+RLR +P FM++
Sbjct: 341 KDELTITCERFEHREENRKDCLRTLYGLIEEAGKANKIAEDIRTSYVKQRLRASPAFMQK 400

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g13880 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g13880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933107.1	9.29e-116	73.64	uncharacterized protein LOC111439871 [Cucurbita moschata] >XP_022933111.1 unchar...	[more]
KAG6587663.1	1.51e-112	78.26	hypothetical protein SDJN03_16228, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7023307.1	1.59e-112	71.83	hypothetical protein SDJN02_14332, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022921942.1	2.53e-111	71.83	uncharacterized protein LOC111430048 [Cucurbita moschata]	[more]
KAG6589616.1	1.45e-110	71.43	hypothetical protein SDJN03_15039, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG04g13880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EY83	4.50e-116	73.64	uncharacterized protein LOC111439871 OS=Cucurbita moschata OX=3662 GN=LOC1114398...	[more]
A0A6J1E1S5	1.23e-111	71.83	uncharacterized protein LOC111430048 OS=Cucurbita moschata OX=3662 GN=LOC1114300...	[more]
A0A6J1JL06	2.83e-110	71.03	uncharacterized protein LOC111485553 OS=Cucurbita maxima OX=3661 GN=LOC111485553...	[more]
A0A6J1C1G2	2.22e-109	69.69	uncharacterized protein LOC111007394 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A0D2TS37	1.48e-99	67.26	MRP-S28 domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=...	[more]

BLAST of Cp4.1LG04g13880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18240.1	8.2e-72	56.15	Ribosomal protein S24/S35, mitochondrial	[more]
AT3G18240.2	8.2e-72	56.15	Ribosomal protein S24/S35, mitochondrial	[more]
AT4G21460.1	1.4e-68	54.10	Ribosomal protein S24/S35, mitochondrial	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..75
None	No IPR available	GENE3D	3.30.160.20		coord: 140..212 e-value: 1.4E-5 score: 26.8
IPR039848	Ribosomal protein S24/S35, mitochondrial	PANTHER	PTHR13490	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28	coord: 146..211 coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g13880.1	Cp4.1LG04g13880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome