Cp4.1LG04g13440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g13440
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Clavata3/ESR (CLE) gene family member
Location	Cp4.1LG04: 10976855 .. 10977139 (+)
RNA-Seq Expression	Cp4.1LG04g13440
Synteny	Cp4.1LG04g13440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCTAGCTCAATCCAGCATTTTGGTGCTTTCGCTATCGGTTTTTGTCTGCATCGGCTCGGTCGTCGGAGCTCGGAAGATGTTGTTCTTGGCTCAAGACAGTACCAGAGACAACAACAGCTTGACGATTGCCATGGAGAGTAGCAGAAGGTGCAAGTCAAAGAAGCTGTATTGTTGTGAGTGCTTCTTCTCAAGCTCTGAGAAGATGATCAATAATGCTACCAGTAGTTCTGAGGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

mRNA sequence

ATGAGGCTAGCTCAATCCAGCATTTTGGTGCTTTCGCTATCGGTTTTTGTCTGCATCGGCTCGGTCGTCGGAGCTCGGAAGATGTTGTTCTTGGCTCAAGACAGTACCAGAGACAACAACAGCTTGACGATTGCCATGGAGAGTAGCAGAAGGTGCAAGTCAAAGAAGCTGTATTGTTGTGAGTGCTTCTTCTCAAGCTCTGAGAAGATGATCAATAATGCTACCAGTAGTTCTGAGGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

Coding sequence (CDS)

ATGAGGCTAGCTCAATCCAGCATTTTGGTGCTTTCGCTATCGGTTTTTGTCTGCATCGGCTCGGTCGTCGGAGCTCGGAAGATGTTGTTCTTGGCTCAAGACAGTACCAGAGACAACAACAGCTTGACGATTGCCATGGAGAGTAGCAGAAGGTGCAAGTCAAAGAAGCTGTATTGTTGTGAGTGCTTCTTCTCAAGCTCTGAGAAGATGATCAATAATGCTACCAGTAGTTCTGAGGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATAAGTAG

Protein sequence

MRLAQSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMESSRRCKSKKLYCCECFFSSSEKMINNATSSSEEKRVVPTGPNPLHNK

Homology

[Close]

BLAST of Cp4.1LG04g13440 vs. NCBI nr
Match: KAG6587715.1 (hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181 bits (459), Expect = 2.78e-57
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MRLAQSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMESSRRCKSKKLYCC 60
          MRLAQSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMESSRRCKSKKLYCC
Sbjct: 1  MRLAQSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMESSRRCKSKKLYCC 60

Query: 61 ECFFSSSEKMINNATSSSEEKRVVPTGPNPLHNK 94
          ECFFSSSEKMINNATSSSEEKRVVPTGPNPLHNK
Sbjct: 61 ECFFSSSEKMINNATSSSEEKRVVPTGPNPLHNK 94

[Close]

BLAST of Cp4.1LG04g13440 vs. NCBI nr
Match: XP_023003872.1 (putative receptor-like protein kinase At4g00960 [Cucurbita maxima])

HSP 1 Score: 140 bits (354), Expect = 7.96e-37
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 5   QSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMESSRRCKSKKLYCCECFF 64
           +SSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAME+SRRCKSKKLYCC CFF
Sbjct: 113 RSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMENSRRCKSKKLYCCGCFF 172

Query: 65  SSSEKMINNATSSSEEKRV 83
           SSSEK INNATSSSEEKR+
Sbjct: 173 SSSEKTINNATSSSEEKRL 191

[Close]

BLAST of Cp4.1LG04g13440 vs. NCBI nr
Match: KGN65507.1 (hypothetical protein Csa_019832 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.99e-21
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1   MRLAQSSILVLSLSVFV-CIGSVVGARKMLFLAQDSTRDN-NSLT--IAMESSRRCKSKK 60
           M L++SSIL+  LSV V C+ SV GARK LFL  +  RDN NSLT  +A  +  RCK  K
Sbjct: 5   MGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYSK 64

Query: 61  ------LYCCECFFSSSEKMI---NNATSSSEEKRVVPTGPNPLHN 93
                 L+CCECFF SS+KM+   NN  ++ EEKRVVPTGPNPLHN
Sbjct: 65  NNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

[Close]

BLAST of Cp4.1LG04g13440 vs. NCBI nr
Match: KAA0058189.1 (Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (CLE) gene family member [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.14e-20
Identity = 59/106 (55.66%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MRLAQSSILVLSLSVFV-CIGSVVGARKMLFLAQDSTRDN-NSLTIAMESS--RRCKSKK 60
           M L++SSILV  LSV V C+ SV GARK LFL  +  RDN NSLT     +   RCK  K
Sbjct: 5   MGLSKSSILVFWLSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRCKYSK 64

Query: 61  -----LYCCECFFSSSEKMI----NNATSSSEEKRVVPTGPNPLHN 93
                L+CCECFF SS+KM+    NN  ++ E+KRVVPTGPNPLHN
Sbjct: 65  NNANDLHCCECFFLSSKKMMMMINNNNGTNFEDKRVVPTGPNPLHN 110

[Close]

BLAST of Cp4.1LG04g13440 vs. NCBI nr
Match: RHN64652.1 (hypothetical protein MtrunA17_Chr4g0071381 [Medicago truncatula])

HSP 1 Score: 64.3 bits (155), Expect = 4.56e-11
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 5  QSSILVLSLSVFVCIGSVVGARKMLFLAQ--DSTRDNNSLTIAM--ESSRRCKSKKLYCC 64
          Q  ILV+ +  + CIGS   ARK +F+    D  +  NS ++A+  +   +C  K+ +  
Sbjct: 4  QEVILVICILFWACIGSTTVARKTVFVGNLFDGAKKKNSSSVAVLDDDVHKCNHKRKHLS 63

Query: 65 ECFFSSSEKMINNATSSSEEKRVVPTGPNPLHNK 94
           C+         N TSSSE+KRVVPTGPNPLHN+
Sbjct: 64 SCY---------NNTSSSEDKRVVPTGPNPLHNR 88

[Close]

BLAST of Cp4.1LG04g13440 vs. ExPASy TrEMBL
Match: A0A6J1KNU3 (putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=LOC111497330 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 3.85e-37
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 5   QSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMESSRRCKSKKLYCCECFF 64
           +SSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAME+SRRCKSKKLYCC CFF
Sbjct: 113 RSSILVLSLSVFVCIGSVVGARKMLFLAQDSTRDNNSLTIAMENSRRCKSKKLYCCGCFF 172

Query: 65  SSSEKMINNATSSSEEKRV 83
           SSSEK INNATSSSEEKR+
Sbjct: 173 SSSEKTINNATSSSEEKRL 191

[Close]

BLAST of Cp4.1LG04g13440 vs. ExPASy TrEMBL
Match: A0A0A0LXI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.64e-22
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1   MRLAQSSILVLSLSVFV-CIGSVVGARKMLFLAQDSTRDN-NSLT--IAMESSRRCKSKK 60
           M L++SSIL+  LSV V C+ SV GARK LFL  +  RDN NSLT  +A  +  RCK  K
Sbjct: 5   MGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYSK 64

Query: 61  ------LYCCECFFSSSEKMI---NNATSSSEEKRVVPTGPNPLHN 93
                 L+CCECFF SS+KM+   NN  ++ EEKRVVPTGPNPLHN
Sbjct: 65  NNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

[Close]

BLAST of Cp4.1LG04g13440 vs. ExPASy TrEMBL
Match: A0A5A7UXE2 (Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002000 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.53e-21
Identity = 59/106 (55.66%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MRLAQSSILVLSLSVFV-CIGSVVGARKMLFLAQDSTRDN-NSLTIAMESS--RRCKSKK 60
           M L++SSILV  LSV V C+ SV GARK LFL  +  RDN NSLT     +   RCK  K
Sbjct: 5   MGLSKSSILVFWLSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRCKYSK 64

Query: 61  -----LYCCECFFSSSEKMI----NNATSSSEEKRVVPTGPNPLHN 93
                L+CCECFF SS+KM+    NN  ++ E+KRVVPTGPNPLHN
Sbjct: 65  NNANDLHCCECFFLSSKKMMMMINNNNGTNFEDKRVVPTGPNPLHN 110

[Close]

BLAST of Cp4.1LG04g13440 vs. ExPASy TrEMBL
Match: A0A396IGH6 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0071381 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.21e-11
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 5  QSSILVLSLSVFVCIGSVVGARKMLFLAQ--DSTRDNNSLTIAM--ESSRRCKSKKLYCC 64
          Q  ILV+ +  + CIGS   ARK +F+    D  +  NS ++A+  +   +C  K+ +  
Sbjct: 4  QEVILVICILFWACIGSTTVARKTVFVGNLFDGAKKKNSSSVAVLDDDVHKCNHKRKHLS 63

Query: 65 ECFFSSSEKMINNATSSSEEKRVVPTGPNPLHNK 94
           C+         N TSSSE+KRVVPTGPNPLHN+
Sbjct: 64 SCY---------NNTSSSEDKRVVPTGPNPLHNR 88

[Close]

BLAST of Cp4.1LG04g13440 vs. ExPASy TrEMBL
Match: G7JT84 (Clavata3/ESR (CLE) gene family member OS=Medicago truncatula OX=3880 GN=MTR_4g126940 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.26e-11
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 5  QSSILVLSLSVFVCIGSVVGARKMLFLAQ--DSTRDNNSLTIAM--ESSRRCKSKKLYCC 64
          Q  ILV+ +  + CIGS   ARK +F+    D  +  NS ++A+  +   +C  K+ +  
Sbjct: 4  QEVILVICILFWACIGSTTVARKTVFVGNLFDGAKKKNSSSVAVLDDDVHKCNHKRKHLS 63

Query: 65 ECFFSSSEKMINNATSSSEEKRVVPTGPNPLHNK 94
           C+         N TSSSE+KRVVPTGPNPLHN+
Sbjct: 64 SCY---------NNTSSSEDKRVVPTGPNPLHNR 88

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g13440 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g13440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587715.1	2.78e-57	100.00	hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023003872.1	7.96e-37	93.67	putative receptor-like protein kinase At4g00960 [Cucurbita maxima]	[more]
KGN65507.1	1.99e-21	56.60	hypothetical protein Csa_019832 [Cucumis sativus]	[more]
KAA0058189.1	1.14e-20	55.66	Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (...	[more]
RHN64652.1	4.56e-11	40.43	hypothetical protein MtrunA17_Chr4g0071381 [Medicago truncatula]	[more]

BLAST of Cp4.1LG04g13440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KNU3	3.85e-37	93.67	putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LXI1	9.64e-22	56.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1	[more]
A0A5A7UXE2	5.53e-21	55.66	Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A396IGH6	2.21e-11	40.43	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0071381 ...	[more]
G7JT84	2.26e-11	40.43	Clavata3/ESR (CLE) gene family member OS=Medicago truncatula OX=3880 GN=MTR_4g12...	[more]

BLAST of Cp4.1LG04g13440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..94
None	No IPR available	PANTHER	PTHR34545:SF10	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER	coord: 1..94
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g13440.1	Cp4.1LG04g13440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0048731	system development
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity