Cp4.1LG04g13350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g13350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG04: 10962006 .. 10966654 (+)
RNA-Seq Expression	Cp4.1LG04g13350
Synteny	Cp4.1LG04g13350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATTTTAGGATATTATCTTTAAATTTGTACTGAAACTTCGCTGCGCGCGAGAAAGCGTTTGTATATAAAGACCAGACACTCTGTGCTGAAGGAATTCGCAATTCATTCAATCACAGGGTGCGTCAATGGAGGCGCCGAGGAAGCTTTGTAGCCATAGCCATACCTCTACTTCCAAAACCTAACGAAAGAGACGATCCAAATCCCAATCCAACTTCAATGTCATTACCACTCTCTATCTCTTCTTCTCGCCGCCGTCTCCATCCCTCCAGAGTAACCCTTCTATGCGTTTACCTGCCCTTGGATTTAACTCTTTCGTTGGTTCTTGATTTTGACTGTCTTTGTTTTCCCATTTCAGGCGCTCAGGAATCGCTTCTTGTTCGATCATATCGCTCTGTATAAATGAACTGATTGCTTCGAATGATGCGGTTGTGAGAGATTTGATCGCGACCTTTGCGTATTCGAAGAGAAGAGTTGCGTTGGCTGCTTGTACTGCTGTTATGGATTTGTCCACCGCGTTGTTTGGGCGGCGGAGGTTGGTACAGGTCTCTCCCATTGAGTGTCTTATGTAAGTTTTTATAGATATCGACTCTAATTCTGGATTTCCTTTTTAATTTGTCTCGTATGGTGAAATCGGTTTAACTATGAACTTAATTATGTTCTTGATTTTGCTTTTGTACTCTGTATCTTTGCAATTCCAAACGAAAAGAGTATGATTGAAAGAACTTTGTGATTAATACGACATACAATTCGATGGCGTGGTGGTTTGTGCAGCGAATGATAGTTGAATCAATCTAACATCTATACAAGCTCAGGGTATTTTCTTGGATATCTGGACTTAATATCTACTAGATCTGCGTTTATGCAGGCTTAAAGTTAAGTTATGCATGAACATGTGAAGAAATTTTTAAACAAGGTTATACAATTGATCTGTGTGGCATGGAATTTCTGTATAAGAAGATTTTTGCTACTGCAAATGCTATAGAATCTCTGTTTGGTCAACCATCTGTAGGTACTGATATGTACTTGACACCTCCAGGTTCTCTGGGTTTGGCTAGTCAATATGGTGATCCTTGTGTGTTTGTATTGCCGTCAGATATTGTCTGTTTTGGTCCGTTACGTATCGCCGTCAGCCTCACGGTTAAAAGACGTATCTGTTAGGGAGAGGATCTATCCACCCCCTTAGGGGCCAACGTTAAAAGGTATGATATTTTTGGGGCTTATATGTAGAATGTAGAAGTCTGGACTGTTACTAGCATGAAGTTTTGAAAGGTTAAACAATTAAAGGTCATTATACGGATTTCATTCTAGGGAGCAAGTCATGTGCTGTGACCAACATGCTTTTAGTAAAGTATGGAACCTTGTGGTGTTTCCATGGGACACAAGCAGCTTTTTGGACCCAATGCTTCTAATTGTTATTTGTGTTCAAATGCCCATAATGCATGTTGGATTCTCCTTTTTTTGTCCTCCTAAAATTGGACTTCGAATTTGTGGACCCCTGGGAGTTAATCAGACAGCTATTTGTGTTCATACAAGTGTTTTATAGTGAGAACCTTCATATGATCATTTAATTCTGTAGGACGATGATTCTTAACCAAGAAAGTAATATATGATCACAATCATTTTACGTTTGAGCTTTTTTATGATTTCGTGTTCATGTCAAAGCTAGTTCTCGTCATAGATCACTTGTAAAAGCCTAAAGTTAGTTGTAATTATTGCATTGCTAGTTCCAGGGTGCGCAAAGATCTATGGTAGTTGAGTTCACATTTAAGTGCTTATTGTGATCATAGCACATGACATTTGATAGATTGTATATATAATTGTTACATGAATAAAAGAGAGCATTTGATAGATTATACAGAAAAATGTGTGTCTGTAGTGCAGTACATGTATAAGTAGCTCATGTCATCTTGAAAGTTGATACATAGCCTATGGCTATGGATGATCGGGTGGATTCGGATGCGTTTTCGGCCCATTATAGTCAATATGGTAGACAAGTTCATCGGCACCGTCGATACTTTTTTCATATTCATGTGTGTTGGAGGAAATTTCTTGTTTATGATCCTGCATTTTGGAATATCCATATGTTAGGGTGGCGGAATCCATTCCAAAAGCCAAAATCAAAGAAGTTAGTATTAATTTAGCATACCTTGACTCTGTGATATTCATGTTCTGGGTTGGAAAATGATGTATCAAGGTACTTCCTTGCAGGTCTTCCTTCAGAGGCGAAAGTCTGAGGATGAGAATGAAAGGGATCCACTGAAAGAAGATAGAAAAGGGCAGTAAAGAGCAGGAAACATTGAATAAAATGTGAGTATCTCATTTCTTGACTTTGTCTGCCAAAATAAAGATGAGCTTATCTTGGGATGGAAAGAGATGGGTTTGCAGCAATATATATAGGCCAGGCTTATGATTTTGTTGCTAATTCAGAATGAAACAGACACAATACCAACCAAGAATCCAGACAACTGCCTCTGTCTTCAACCCATTTACCTTTTTTTCAGCCGACTTAACTGGTTGAAATTTCACGTGTTTGTTCCATGCCAAACAGAACCTCTCATGGCATGGCCAGATTGTTCATCGCTGTTTTTACCCTTTGGCTCTCTCTCTCTCCCCCCTATCTTTATCCTGTCAGTTACATGGTAATAGATGCTCGATGCCATTTTAGGAAAATAAAATCCTGCATTTTCTTTTCTGGTTTTAAAAAAGTGGAAAAAAACCCCATCTTTTCGCTGTCTCTAGATCTATTTTTACCCAAGTGATAAGTTTGGATTCGGGATGATGGGTGTAACGGCGGAAAGACACTGCTAGTAAATATTGTTTTGTTTGAAGGCTTCTCTTTTTGGCCGAAAGACACTGCTAGTAAATATTGTTTTGTTTGAAGGCTTCTCTTTCCGGACTTCTTCTTAAAACGCGTCTGCTATGGAGAGAATACTCCGTTCCTCTCTCTAACTGATGTGGACTCTCACAATCCACTCCTTTAGGGCTAGTGTCACAATCGCCTTTTCTTGGCAATGAATTTGACGATTTCCTCTTAAAACGCGTCTGCTATGGAGAGAATACTCCGTTCCTCTCTCTAACTGATGTGGACTCTCACAATCCACTCCTTTAGGGCTAGTGTCACAATCGCCTTTTCTTGGCAATGAATTTGACGATTTCCTCTTAAAACGCGTCTGCTATGGAGAGAATACTCCGTTCCTCTCTCTAACTGATGTGGACTCTCACAATCCACTCCTTTAGGGCTAGTGTCACAATCGCCTTTTCTTGGCAATGAATTTGACGATTGTGCGGCACTCACTCTCAACACTAAGTGAGTCAAGCCAACTTTGGATCACGTTGCCTACAGTTGGACAATGTATATTCAAGCCTCGGGCCCCGATTAGAAAATGGGGGAGAAATTTTGGAAAAAGAGTTTTGAAAGCAAGAATGAGAAAGAGATTGAGAGTGGTGTTGTATTGCATGCAAGCAAAAATGCGACAACAACTGCTTATAGAGTATATAACTTTTCGGGTAGGGAAAATTTGACAACTAGTCACATCCTCTATAGTACATTTTGAGGCATTTCATGTTTACCAAACGTAACCATGATTTCGCCGAAACGTCATACTCTTGAAGAATGAAAGAAGTAAAAGAAAGCGGTAAATTAGTATAAGGCAAGGGTTTCAGCATGTGACGGACATGCGGCCATGGACAACACGCCTTGGACAAGCATGGCCGAGACACCCAGCATCCTCACTGGCACTCGTTCCCTTTCCAATCGATGTGGAACCCCCCAATCCACTCCCTTTCAGGACCCAGCGTCCTTGCTAGCACATCACCTGATGTCCACCCCCTTTGGAATTCAGCCTCTTTGTTGGTACATAGTCCGGTGTCTAGCTCTAATACCATTTGTAACAACCCAATCCCACCGCTAGCAAATATTGTCCCATATGGGTTTTTTCTTATGGGTTTCCCTTAAGGTTTTAAAACGCATCTGCTAAAAAGAAGTTTTCACACCCTTGTAAATAATGTTTCGTTCCCCTCTCAAACTGATGTAGGATCTTACAATGGGGTTGTCTTATCTATCATTTTTTCGGGTAAGAATTATCGGTCATTTTCAACTTATAACCAAATTTTTGGTCTAAACTTTTCGAATTTTATTGGGATATGTGAGATCTAATTGCGGAGGTTGTAAAGCTTGTAAATTTGTGAAGCCATGGAGAATTTTGGTGCAGGAGGTAGGCATTGTGGTGTGGTGTGGTGTGGTGTGGTGTGTATGCAATAAATATACGGAACTGAAAGAGGTGTGCATTTTACAGCTTTTGAGCATGATTGATTCTTGCATGATTAACATCATCACCAATGGCTACTGGAGATTCCATGTGACATTGATTTGAAAGGGAAGTGGTAATGTGAATTAATCAGCTGATATATAAGTGTCATCAACCCAGGCTTCATGACATGACTTCCCTTTTGTTTTCTTCCTATGAATGTGAACACCTCAGATCTGGAAATTTGAACTTTCATCATTTTCTGATAGTGATAGTCTAGTTTCTTACTCCAATGACAAGACTTATCTGATAACAAATGGATGTCGACCGTTTCTGGAAACATTTGCGTTCTTTATTCCGTTTAATGAAATACTAATAGATTCTAAATTTAATGATGTAC

mRNA sequence

AGAATTTTAGGATATTATCTTTAAATTTGTACTGAAACTTCGCTGCGCGCGAGAAAGCGTTTGTATATAAAGACCAGACACTCTGTGCTGAAGGAATTCGCAATTCATTCAATCACAGGGTGCGTCAATGGAGGCGCCGAGGAAGCTTTGTAGCCATAGCCATACCTCTACTTCCAAAACCTAACGAAAGAGACGATCCAAATCCCAATCCAACTTCAATGTCATTACCACTCTCTATCTCTTCTTCTCGCCGCCGTCTCCATCCCTCCAGAGCGCTCAGGAATCGCTTCTTGTTCGATCATATCGCTCTGTATAAATGAACTGATTGCTTCGAATGATGCGGTTGTGAGAGATTTGATCGCGACCTTTGCGTATTCGAAGAGAAGAGTTGCGTTGGCTGCTTGTACTGCTGTTATGGATTTGTCCACCGCGTTGTTTGGGCGGCGGAGGTTGGTACAGGTCTCTCCCATTGAGTGTCTTATGGTGGCGGAATCCATTCCAAAAGCCAAAATCAAAGAAGTCTTCCTTCAGAGGCGAAAGTCTGAGGATGAGAATGAAAGGGATCCACTGAAAGAAGATAGAAAAGGGCAGTAAAGAGCAGGAAACATTGAATAAAATCTTTTGAGCATGATTGATTCTTGCATGATTAACATCATCACCAATGGCTACTGGAGATTCCATGTGACATTGATTTGAAAGGGAAGTGGTAATGTGAATTAATCAGCTGATATATAAGTGTCATCAACCCAGGCTTCATGACATGACTTCCCTTTTGTTTTCTTCCTATGAATGTGAACACCTCAGATCTGGAAATTTGAACTTTCATCATTTTCTGATAGTGATAGTCTAGTTTCTTACTCCAATGACAAGACTTATCTGATAACAAATGGATGTCGACCGTTTCTGGAAACATTTGCGTTCTTTATTCCGTTTAATGAAATACTAATAGATTCTAAATTTAATGATGTAC

Coding sequence (CDS)

ATGGATTTGTCCACCGCGTTGTTTGGGCGGCGGAGGTTGGTACAGGTCTCTCCCATTGAGTGTCTTATGGTGGCGGAATCCATTCCAAAAGCCAAAATCAAAGAAGTCTTCCTTCAGAGGCGAAAGTCTGAGGATGAGAATGAAAGGGATCCACTGAAAGAAGATAGAAAAGGGCAGTAA

Protein sequence

MDLSTALFGRRRLVQVSPIECLMVAESIPKAKIKEVFLQRRKSEDENERDPLKEDRKGQ

Homology

[Close]

BLAST of Cp4.1LG04g13350 vs. NCBI nr
Match: KAG7021683.1 (hypothetical protein SDJN02_15409, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 47.0 bits (110), Expect = 1.47e-04
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   MDLSTALFGRRRLVQVSPIECLM 23
           MDLSTALFGRRRLV+VSPIECLM
Sbjct: 97  MDLSTALFGRRRLVEVSPIECLM 119

[Close]

BLAST of Cp4.1LG04g13350 vs. NCBI nr
Match: KAG6587718.1 (hypothetical protein SDJN03_16283, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 47.0 bits (110), Expect = 1.60e-04
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   MDLSTALFGRRRLVQVSPIECLM 23
           MDLSTALFGRRRLV+VSPIECLM
Sbjct: 97  MDLSTALFGRRRLVEVSPIECLM 119

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g13350 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g13350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021683.1	1.47e-04	95.65	hypothetical protein SDJN02_15409, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587718.1	1.60e-04	95.65	hypothetical protein SDJN03_16283, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG04g13350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g13350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g13350.1	Cp4.1LG04g13350.1	mRNA