Cp4.1LG04g13320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g13320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	homeobox-leucine zipper protein HAT3-like
Location	Cp4.1LG04: 10970697 .. 10972063 (+)
RNA-Seq Expression	Cp4.1LG04g13320
Synteny	Cp4.1LG04g13320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCATAACTGATATTCAACTCGAAACCTCTTTCCTTCAAACCCTCTCTTAATCCCCTCTCCCTCTCTTTCTCTCTCTCTCTCTACATCCGCCATGGGAGACCAAGACGACCTCTGCAACATCAGGCTCGGCCTTAGCCTCGGCTCTGGATTTGGGGAATACGTCCCCAAAAAGATGCAGAAAATCAACAGTAATCATAACAACCCTAAATCCTTCACTGACCTCTCCTTCACCCTGGTTCCCAAGCAAGAATTGCCCATTAATTCTTCAACCACAACCAACAGCCTCGGCTCCGAACGTGAAAGAGAGAGAAAAAAGCTTCGGCTTTCTAAAGAACAAGCCACTTTGCTCGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCTGTAAGCTCTTTTTTTTTTCATACCCATTTCACCATTTTCCATCATTTTCAATTTTCAAAAATACCCATTTCACCATTTTGCATAATTTTCATTTTTTTCAAATACCCATTTCACCATTTTGCATAATTTTCATTTTTTTCAAATACCCATTTCACCATTTTGCATAATTTTCATTTTTTTCAAATACCCATTTCACCATTTTGCATAATTTTCATTTTTTTCAAATACCCATTTCACCATTTTGCATAATTTTCATTTTTTTCAAATACCCATTTCACCATTTTGCATAATTTTCATTTTTTTCAAATACCCATTTCACCATTTTGCATAATTTTCATTTTTTTCAAATACCCATTTCACCATTTTGCATAATTTTCATTTTTTTCAAATACCCATTTCACCATTTTGCATAATTTTCATTTTTTTCAAATACCCTTTTCACCATTTTGCATAATTTTCATTTTTTTCAAATACCCATTTCGTTTTTGTGTCAAAAATTTGATTTTTATTTGATTTTTGTTGTTTTTGCATGGATTTGTAGGCTCAGAAACAGGCACTTGCCCACCAATTAAACCTCAAAACACGACAAGTGGAAGTCTGGTTCCAAAACAGACGTGCAAGGTAATAATAATAATAAATAAATAAATAAATAAAAACATTAATTTCTTCAAAAAATAAATAAATAACTCTGTTTGAATTTAAAAAAAAAAATAGGACGAAATTGAAGCAAACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAGAGGCTGAACGAAGAGAATCGGAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATCAAACTCGGAGCTTCCCAGTTGTATATTCAGCTCCCCAAGGCGGCGACGCTCACAATTTGCCCCTCATGCGACAAGATCACCAGGACACCCGCCGCCAACGCCGCCGCCGAGCCCAACTCTCCGCCACTATAATTTAATGTCATTTTTTTTAGTA

mRNA sequence

CATCATAACTGATATTCAACTCGAAACCTCTTTCCTTCAAACCCTCTCTTAATCCCCTCTCCCTCTCTTTCTCTCTCTCTCTCTACATCCGCCATGGGAGACCAAGACGACCTCTGCAACATCAGGCTCGGCCTTAGCCTCGGCTCTGGATTTGGGGAATACGTCCCCAAAAAGATGCAGAAAATCAACAGTAATCATAACAACCCTAAATCCTTCACTGACCTCTCCTTCACCCTGGTTCCCAAGCAAGAATTGCCCATTAATTCTTCAACCACAACCAACAGCCTCGGCTCCGAACGTGAAAGAGAGAGAAAAAAGCTTCGGCTTTCTAAAGAACAAGCCACTTTGCTCGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCTGCTCAGAAACAGGCACTTGCCCACCAATTAAACCTCAAAACACGACAAGTGGAAGTCTGGTTCCAAAACAGACGTGCAAGGACGAAATTGAAGCAAACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAGAGGCTGAACGAAGAGAATCGGAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATCAAACTCGGAGCTTCCCAGTTGTATATTCAGCTCCCCAAGGCGGCGACGCTCACAATTTGCCCCTCATGCGACAAGATCACCAGGACACCCGCCGCCAACGCCGCCGCCGAGCCCAACTCTCCGCCACTATAATTTAATGTCATTTTTTTTAGTA

Coding sequence (CDS)

ATGGGAGACCAAGACGACCTCTGCAACATCAGGCTCGGCCTTAGCCTCGGCTCTGGATTTGGGGAATACGTCCCCAAAAAGATGCAGAAAATCAACAGTAATCATAACAACCCTAAATCCTTCACTGACCTCTCCTTCACCCTGGTTCCCAAGCAAGAATTGCCCATTAATTCTTCAACCACAACCAACAGCCTCGGCTCCGAACGTGAAAGAGAGAGAAAAAAGCTTCGGCTTTCTAAAGAACAAGCCACTTTGCTCGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCTGCTCAGAAACAGGCACTTGCCCACCAATTAAACCTCAAAACACGACAAGTGGAAGTCTGGTTCCAAAACAGACGTGCAAGGACGAAATTGAAGCAAACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAGAGGCTGAACGAAGAGAATCGGAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATCAAACTCGGAGCTTCCCAGTTGTATATTCAGCTCCCCAAGGCGGCGACGCTCACAATTTGCCCCTCATGCGACAAGATCACCAGGACACCCGCCGCCAACGCCGCCGCCGAGCCCAACTCTCCGCCACTATAA

Protein sequence

MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPINSSTTTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAAEPNSPPL

Homology

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BLAST of Cp4.1LG04g13320 vs. ExPASy Swiss-Prot
Match: P46602 (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana OX=3702 GN=HAT3 PE=1 SV=2)

HSP 1 Score: 166.0 bits (419), Expect = 4.4e-40
Identity = 86/135 (63.70%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 66  GSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRAR 125
           G+  +  RKKLRLSKEQA +LEE+FK H+TLNP QK ALA QLNL+TRQVEVWFQNRRAR
Sbjct: 154 GNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRAR 213

Query: 126 TKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSC 185
           TKLKQTEVDCE+LK+CCE L +ENRRL+KE+ ELR++KL +  LY+ +    TLT+CPSC
Sbjct: 214 TKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKL-SPHLYMHMKPPTTLTMCPSC 273

Query: 186 DKITRTPAANAAAEP 201
           +++  T ++++ A P
Sbjct: 274 ERVAVTSSSSSVAPP 287

[Close]

BLAST of Cp4.1LG04g13320 vs. ExPASy Swiss-Prot
Match: P46604 (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana OX=3702 GN=HAT22 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.8e-39
Identity = 83/116 (71.55%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 73  RKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTE 132
           RKKLRL+K+Q+ LLE++FKLH+TLNP QKQALA QLNL+ RQVEVWFQNRRARTKLKQTE
Sbjct: 125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE 184

Query: 133 VDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKI 189
           VDCEFLKKCCE L +ENRRL+KEL +L+++KL +   Y+ +P AATLT+CPSC+++
Sbjct: 185 VDCEFLKKCCETLTDENRRLQKELQDLKALKL-SQPFYMHMP-AATLTMCPSCERL 238

[Close]

BLAST of Cp4.1LG04g13320 vs. ExPASy Swiss-Prot
Match: Q01I23 (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica OX=39946 GN=HOX17 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-38
Identity = 81/126 (64.29%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 73  RKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTE 132
           RKKLRLSK+Q+ +LE+SF+ H TLNP QK  LA QL L+ RQVEVWFQNRRARTKLKQTE
Sbjct: 81  RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTE 140

Query: 133 VDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTP 192
           VDCEFLK+CCE L EENRRL+KE+ ELR++KL +  LY+ +    TLT+CPSC++++ T 
Sbjct: 141 VDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERVSNTN 200

Query: 193 AANAAA 199
             ++AA
Sbjct: 201 NNSSAA 206

[Close]

BLAST of Cp4.1LG04g13320 vs. ExPASy Swiss-Prot
Match: Q0JB92 (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX17 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-38
Identity = 81/126 (64.29%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 73  RKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTE 132
           RKKLRLSK+Q+ +LE+SF+ H TLNP QK  LA QL L+ RQVEVWFQNRRARTKLKQTE
Sbjct: 81  RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTE 140

Query: 133 VDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTP 192
           VDCEFLK+CCE L EENRRL+KE+ ELR++KL +  LY+ +    TLT+CPSC++++ T 
Sbjct: 141 VDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERVSNTN 200

Query: 193 AANAAA 199
             ++AA
Sbjct: 201 NNSSAA 206

[Close]

BLAST of Cp4.1LG04g13320 vs. ExPASy Swiss-Prot
Match: P92953 (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana OX=3702 GN=ATHB-4 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.2e-38
Identity = 84/133 (63.16%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 66  GSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRAR 125
           G   +  RKKLRLSK+QA +LEE+FK H+TLNP QK ALA QLNL+ RQVEVWFQNRRAR
Sbjct: 155 GGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRAR 214

Query: 126 TKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSC 185
           TKLKQTEVDCE+LK+CC+ L EENRRL+KE+ ELR++KL +  LY+ +    TLT+CPSC
Sbjct: 215 TKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKL-SPHLYMHMTPPTTLTMCPSC 274

Query: 186 DKITRTPAANAAA 199
           ++++ + A   AA
Sbjct: 275 ERVSSSAATVTAA 286

[Close]

BLAST of Cp4.1LG04g13320 vs. NCBI nr
Match: XP_023531587.1 (homeobox-leucine zipper protein HAT3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395 bits (1016), Expect = 1.28e-138
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPINSST 60
           MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPINSST
Sbjct: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPINSST 60

Query: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120
           TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ
Sbjct: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120

Query: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180
           NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT
Sbjct: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180

Query: 181 ICPSCDKITRTPAANAAAEPNSPPL 205
           ICPSCDKITRTPAANAAAEPNSPPL
Sbjct: 181 ICPSCDKITRTPAANAAAEPNSPPL 205

[Close]

BLAST of Cp4.1LG04g13320 vs. NCBI nr
Match: KAG6587716.1 (Homeobox-leucine zipper protein HAT4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 391 bits (1005), Expect = 6.09e-137
Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0


Query: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPINSST 60
           MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQEL INSST
Sbjct: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELAINSST 60

Query: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120
           TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ
Sbjct: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120

Query: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180
           NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT
Sbjct: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180

Query: 181 ICPSCDKITRTPAANAAAEPNSPPL 205
           ICPSCDKITRTPAANAAA+PNSPPL
Sbjct: 181 ICPSCDKITRTPAANAAADPNSPPL 205

[Close]

BLAST of Cp4.1LG04g13320 vs. NCBI nr
Match: XP_022931479.1 (homeobox-leucine zipper protein HAT3-like [Cucurbita moschata])

HSP 1 Score: 389 bits (1000), Expect = 3.52e-136
Identity = 203/205 (99.02%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPINSST 60
           MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKS TDLSFTLVPKQEL INSST
Sbjct: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSCTDLSFTLVPKQELAINSST 60

Query: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120
           TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ
Sbjct: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120

Query: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180
           NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT
Sbjct: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180

Query: 181 ICPSCDKITRTPAANAAAEPNSPPL 205
           ICPSCDKITRTPAANAAAEPNSPPL
Sbjct: 181 ICPSCDKITRTPAANAAAEPNSPPL 205

[Close]

BLAST of Cp4.1LG04g13320 vs. NCBI nr
Match: KAG7021681.1 (Homeobox-leucine zipper protein HAT3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273 bits (699), Expect = 3.35e-91
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 60  TTTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWF 119
           TTTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWF
Sbjct: 1   TTTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWF 60

Query: 120 QNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATL 179
           QNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATL
Sbjct: 61  QNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATL 120

Query: 180 TICPSCDKITRTPAANAAAEPNSPPL 205
           TICPSCDKITRTPAANAAA+PNSPPL
Sbjct: 121 TICPSCDKITRTPAANAAADPNSPPL 146

[Close]

BLAST of Cp4.1LG04g13320 vs. NCBI nr
Match: XP_022134791.1 (homeobox-leucine zipper protein HAT22-like [Momordica charantia])

HSP 1 Score: 264 bits (675), Expect = 1.80e-86
Identity = 155/220 (70.45%), Postives = 173/220 (78.64%), Query Frame = 0


Query: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQE---LPIN 60
           MG  D++CNIRLGL LG G  EYVPKK  KIN NHN PK F+DLSFTL+PK+E   + I 
Sbjct: 1   MGGDDEICNIRLGLGLGFGE-EYVPKK--KIN-NHN-PKFFSDLSFTLIPKEEAINVEIE 60

Query: 61  SSTT-------------------TNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNP 120
           +S++                   ++S+      ERKKLRLSKEQ+ LLEESFKLHTTLNP
Sbjct: 61  ASSSDHDHLKRIRSNNNQDQIRDSSSIVINGSSERKKLRLSKEQSNLLEESFKLHTTLNP 120

Query: 121 AQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHE 180
           AQKQALA QLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKE+ E
Sbjct: 121 AQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQE 180

Query: 181 LRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAA 198
           LRS+K+GASQLYIQLPKAATLTICPSC+K+TR  AA AAA
Sbjct: 181 LRSLKIGASQLYIQLPKAATLTICPSCNKLTRNAAATAAA 215

[Close]

BLAST of Cp4.1LG04g13320 vs. ExPASy TrEMBL
Match: A0A6J1EUD1 (homeobox-leucine zipper protein HAT3-like OS=Cucurbita moschata OX=3662 GN=LOC111437643 PE=4 SV=1)

HSP 1 Score: 389 bits (1000), Expect = 1.71e-136
Identity = 203/205 (99.02%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPINSST 60
           MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKS TDLSFTLVPKQEL INSST
Sbjct: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSCTDLSFTLVPKQELAINSST 60

Query: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120
           TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ
Sbjct: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120

Query: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180
           NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT
Sbjct: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180

Query: 181 ICPSCDKITRTPAANAAAEPNSPPL 205
           ICPSCDKITRTPAANAAAEPNSPPL
Sbjct: 181 ICPSCDKITRTPAANAAAEPNSPPL 205

[Close]

BLAST of Cp4.1LG04g13320 vs. ExPASy TrEMBL
Match: A0A6J1BYS3 (homeobox-leucine zipper protein HAT22-like OS=Momordica charantia OX=3673 GN=LOC111006976 PE=4 SV=1)

HSP 1 Score: 264 bits (675), Expect = 8.71e-87
Identity = 155/220 (70.45%), Postives = 173/220 (78.64%), Query Frame = 0


Query: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQE---LPIN 60
           MG  D++CNIRLGL LG G  EYVPKK  KIN NHN PK F+DLSFTL+PK+E   + I 
Sbjct: 1   MGGDDEICNIRLGLGLGFGE-EYVPKK--KIN-NHN-PKFFSDLSFTLIPKEEAINVEIE 60

Query: 61  SSTT-------------------TNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNP 120
           +S++                   ++S+      ERKKLRLSKEQ+ LLEESFKLHTTLNP
Sbjct: 61  ASSSDHDHLKRIRSNNNQDQIRDSSSIVINGSSERKKLRLSKEQSNLLEESFKLHTTLNP 120

Query: 121 AQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHE 180
           AQKQALA QLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKE+ E
Sbjct: 121 AQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQE 180

Query: 181 LRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAA 198
           LRS+K+GASQLYIQLPKAATLTICPSC+K+TR  AA AAA
Sbjct: 181 LRSLKIGASQLYIQLPKAATLTICPSCNKLTRNAAATAAA 215

[Close]

BLAST of Cp4.1LG04g13320 vs. ExPASy TrEMBL
Match: A0A6J1E158 (homeobox-leucine zipper protein ATHB-4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111429651 PE=4 SV=1)

HSP 1 Score: 258 bits (659), Expect = 2.36e-84
Identity = 156/226 (69.03%), Postives = 169/226 (74.78%), Query Frame = 0


Query: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPIN--- 60
           MGDQD+LCN RLGL+LG  FG+YVPKKMQK N     PK  +DLSF+L+P+QE  IN   
Sbjct: 1   MGDQDELCNTRLGLALG--FGDYVPKKMQKANKQ---PKFLSDLSFSLIPRQESAINMQL 60

Query: 61  -----------------SSTT--TNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNP 120
                            SST    N++    ERERKKLRLS+EQ TLLEE+FKLHTTLN 
Sbjct: 61  QANEPSKDSSFGISRDRSSTNYNCNAISGGLERERKKLRLSQEQLTLLEETFKLHTTLNL 120

Query: 121 AQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHE 180
           AQK ALA QLNLK RQVEVWFQNRRAR+KLKQTEVDCEFLKK CERL EEN RLKKEL E
Sbjct: 121 AQKLALAQQLNLKARQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQE 180

Query: 181 LRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAAEPNSPP 204
           LRS KLGASQLYIQLPKAATLTICPSCDK TR PAA  A E +SPP
Sbjct: 181 LRSTKLGASQLYIQLPKAATLTICPSCDKTTR-PAA--AVEAHSPP 218

[Close]

BLAST of Cp4.1LG04g13320 vs. ExPASy TrEMBL
Match: A0A6J1JA40 (homeobox-leucine zipper protein ATHB-4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484923 PE=4 SV=1)

HSP 1 Score: 252 bits (644), Expect = 4.49e-82
Identity = 151/226 (66.81%), Postives = 167/226 (73.89%), Query Frame = 0


Query: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPIN--- 60
           MGDQD+LCN RLGL+LG  FG+YVPK MQK N     PK  +DLSF+L+P+QE  IN   
Sbjct: 1   MGDQDELCNTRLGLALG--FGDYVPKTMQKANKQ---PKFLSDLSFSLIPRQESAINMQL 60

Query: 61  -----------------SSTT--TNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNP 120
                            SST    N++    ER+RKKLRLS+EQ TLLEE+FKLHTTLN 
Sbjct: 61  QANEPSKDSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNL 120

Query: 121 AQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHE 180
           AQK ALA QLNLK+RQVEVWFQNRRAR+KLKQTEVDCEFLKK CERL EEN RLKKEL E
Sbjct: 121 AQKLALADQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQE 180

Query: 181 LRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAAEPNSPP 204
           LRS K+GASQLYIQLPKAATLTICPSCDK TR  AA    E +SPP
Sbjct: 181 LRSRKIGASQLYIQLPKAATLTICPSCDKTTRPVAA---VEAHSPP 218

[Close]

BLAST of Cp4.1LG04g13320 vs. ExPASy TrEMBL
Match: A0A0A0M012 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G433050 PE=4 SV=1)

HSP 1 Score: 248 bits (634), Expect = 6.49e-80
Identity = 163/270 (60.37%), Postives = 175/270 (64.81%), Query Frame = 0


Query: 4   QDDLCNIRLGLSLGSGFGE-YVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPI------ 63
           +D++CNI   LSLG GFG+ YVPKK+QK      N +    LSFTL+PK+EL I      
Sbjct: 6   EDEICNISW-LSLGLGFGDQYVPKKIQK------NQQQQQQLSFTLIPKEELEITNNNNM 65

Query: 64  -------NSS------------------------------------------------TT 123
                  NSS                                                 T
Sbjct: 66  EIDDDEANSSEEDDDHHLMKRIRSSNNIVNYDHHRQDSSFGSIRRLSSDHYINNSDIVNT 125

Query: 124 TN-------SLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQ 183
           TN       S GSE  RERKKLRLSKEQ+TLLEESFKLHTTLNPAQKQALA QLNLKTRQ
Sbjct: 126 TNHNYKGISSSGSEL-RERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQ 185

Query: 184 VEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLP 204
           VEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEL+ELRS+KLGASQLYIQLP
Sbjct: 186 VEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELNELRSLKLGASQLYIQLP 245

[Close]

BLAST of Cp4.1LG04g13320 vs. TAIR 10
Match: AT3G60390.1 (homeobox-leucine zipper protein 3 )

HSP 1 Score: 166.0 bits (419), Expect = 3.2e-41
Identity = 86/135 (63.70%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 66  GSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRAR 125
           G+  +  RKKLRLSKEQA +LEE+FK H+TLNP QK ALA QLNL+TRQVEVWFQNRRAR
Sbjct: 154 GNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRAR 213

Query: 126 TKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSC 185
           TKLKQTEVDCE+LK+CCE L +ENRRL+KE+ ELR++KL +  LY+ +    TLT+CPSC
Sbjct: 214 TKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKL-SPHLYMHMKPPTTLTMCPSC 273

Query: 186 DKITRTPAANAAAEP 201
           +++  T ++++ A P
Sbjct: 274 ERVAVTSSSSSVAPP 287

[Close]

BLAST of Cp4.1LG04g13320 vs. TAIR 10
Match: AT4G37790.1 (Homeobox-leucine zipper protein family )

HSP 1 Score: 162.9 bits (411), Expect = 2.7e-40
Identity = 83/116 (71.55%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 73  RKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTE 132
           RKKLRL+K+Q+ LLE++FKLH+TLNP QKQALA QLNL+ RQVEVWFQNRRARTKLKQTE
Sbjct: 125 RKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE 184

Query: 133 VDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKI 189
           VDCEFLKKCCE L +ENRRL+KEL +L+++KL +   Y+ +P AATLT+CPSC+++
Sbjct: 185 VDCEFLKKCCETLTDENRRLQKELQDLKALKL-SQPFYMHMP-AATLTMCPSCERL 238

[Close]

BLAST of Cp4.1LG04g13320 vs. TAIR 10
Match: AT2G44910.1 (homeobox-leucine zipper protein 4 )

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-39
Identity = 84/133 (63.16%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 66  GSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRAR 125
           G   +  RKKLRLSK+QA +LEE+FK H+TLNP QK ALA QLNL+ RQVEVWFQNRRAR
Sbjct: 155 GGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRAR 214

Query: 126 TKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSC 185
           TKLKQTEVDCE+LK+CC+ L EENRRL+KE+ ELR++KL +  LY+ +    TLT+CPSC
Sbjct: 215 TKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKL-SPHLYMHMTPPTTLTMCPSC 274

Query: 186 DKITRTPAANAAA 199
           ++++ + A   AA
Sbjct: 275 ERVSSSAATVTAA 286

[Close]

BLAST of Cp4.1LG04g13320 vs. TAIR 10
Match: AT4G16780.1 (homeobox protein 2 )

HSP 1 Score: 157.9 bits (398), Expect = 8.6e-39
Identity = 90/161 (55.90%), Postives = 112/161 (69.57%), Query Frame = 0


Query: 58  SSTTTNSLGSERERE--------------------RKKLRLSKEQATLLEESFKLHTTLN 117
           +ST ++S G   ERE                    RKKLRLSK+Q+ +LEE+FK H+TLN
Sbjct: 93  NSTVSSSTGKRSEREEDTDPQGSRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLN 152

Query: 118 PAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELH 177
           P QKQALA QL L+ RQVEVWFQNRRARTKLKQTEVDCEFL++CCE L EENRRL+KE+ 
Sbjct: 153 PKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVT 212

Query: 178 ELRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAA 199
           ELR++KL + Q Y+ +    TLT+CPSC+ ++  P    AA
Sbjct: 213 ELRALKL-SPQFYMHMSPPTTLTMCPSCEHVSVPPPQPQAA 252

[Close]

BLAST of Cp4.1LG04g13320 vs. TAIR 10
Match: AT5G06710.1 (homeobox from Arabidopsis thaliana )

HSP 1 Score: 157.9 bits (398), Expect = 8.6e-39
Identity = 87/135 (64.44%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 68  ERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTK 127
           E    RKKLRLSK+Q+  LE+SFK H+TLNP QK ALA QLNL+ RQVEVWFQNRRARTK
Sbjct: 184 ENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 243

Query: 128 LKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDK 187
           LKQTEVDCE+LK+CCE L EENRRL+KE+ ELR++K  ++  Y+QLP A TLT+CPSC++
Sbjct: 244 LKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKT-STPFYMQLP-ATTLTMCPSCER 303

Query: 188 ITRTPAANAAAEPNS 203
           +     A +AA+P++
Sbjct: 304 V-----ATSAAQPST 311

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g13320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46602	4.4e-40	63.70	Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana OX=3702 GN=HAT3 PE=...	[more]
P46604	3.8e-39	71.55	Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana OX=3702 GN=HAT22 P...	[more]
Q01I23	2.4e-38	64.29	Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q0JB92	2.4e-38	64.29	Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
P92953	3.2e-38	63.16	Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana OX=3702 GN=ATHB-4...	[more]

BLAST of Cp4.1LG04g13320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531587.1	1.28e-138	100.00	homeobox-leucine zipper protein HAT3-like [Cucurbita pepo subsp. pepo]	[more]
KAG6587716.1	6.09e-137	99.02	Homeobox-leucine zipper protein HAT4, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_022931479.1	3.52e-136	99.02	homeobox-leucine zipper protein HAT3-like [Cucurbita moschata]	[more]
KAG7021681.1	3.35e-91	99.32	Homeobox-leucine zipper protein HAT3, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_022134791.1	1.80e-86	70.45	homeobox-leucine zipper protein HAT22-like [Momordica charantia]	[more]

BLAST of Cp4.1LG04g13320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUD1	1.71e-136	99.02	homeobox-leucine zipper protein HAT3-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1BYS3	8.71e-87	70.45	homeobox-leucine zipper protein HAT22-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1E158	2.36e-84	69.03	homeobox-leucine zipper protein ATHB-4-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1JA40	4.49e-82	66.81	homeobox-leucine zipper protein ATHB-4-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A0A0M012	6.49e-80	60.37	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G433050 PE...	[more]

BLAST of Cp4.1LG04g13320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60390.1	3.2e-41	63.70	homeobox-leucine zipper protein 3	[more]
AT4G37790.1	2.7e-40	71.55	Homeobox-leucine zipper protein family	[more]
AT2G44910.1	2.3e-39	63.16	homeobox-leucine zipper protein 4	[more]
AT4G16780.1	8.6e-39	55.90	homeobox protein 2	[more]
AT5G06710.1	8.6e-39	64.44	homeobox from Arabidopsis thaliana	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..162
None	No IPR available	GENE3D	1.10.10.60		coord: 77..127 e-value: 4.3E-18 score: 66.7
None	No IPR available	PANTHER	PTHR45714:SF26	HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN	coord: 30..190
None	No IPR available	PANTHER	PTHR45714	FAMILY NOT NAMED	coord: 30..190
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 71..133 e-value: 7.1E-15 score: 65.4
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 73..127 e-value: 3.1E-16 score: 58.9
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 69..129 score: 17.604715
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 73..130 e-value: 5.38627E-14 score: 61.8756
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 129..172 e-value: 1.6E-18 score: 77.5
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 129..161 e-value: 6.9E-9 score: 35.8
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 104..127
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 58..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g13320.1	Cp4.1LG04g13320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding