Cp4.1LG04g13270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAGGATTAATTAAGATAATTATAAAGCTTTTACTGACGCTGACGTGGAAGTTTACGCCTTTCTTTTCACTCCACCTCCTCGCGGAGTCAAAAACAGGTAGGCGTCTCTTTGCTTCAAAAAAACAAAATTCCACCGTCGTCGCCGCCGATTTCTCTACCAAATCCCGGCACCTATTTTTCTGCGGATCCAAGCTTCAACACCTTCTTCTTCCTTCAGCCCTAGATCTCCGTTTATTACAGAGAAAGATGGCGTACGTGGACCATGCGTTTTCGATAACAGACGAAGACATTATGATGGATTCTCCCTTCACCGTCAACAATCGGCCTCCTATCAAGGAGATCGCTCTTGCTGTTTCTCTTCTCTTTTTTGGAATGATTGGAATCATCGTTGGTATCTTCATGGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTGCTTTGTGTTCTTCTTCTAATTTTGCCCTAGTTCGAATGTTAATAAGTTTTGCTTTGTTCTTGATGATTTTCAGGGGTGTTCTTCTCGTTGTTGGGAGCTCTCTTGTTTATTCCGGGTTTCTATTACACGCGGATTGCTTACTATGCGTACAAGGGTTACAAGGGTTTCTCCTTCTCCAACATACCGCCTGTCTAAATCCTCCAAGTCCAACCACTTCTCTACACTTGTACATATTTTCTTCTCCAGATTTCTTCACTCTCTACGCTGTTCCCCCCTCCCGCTTCTCCTTTTGACTACAACTAACACTATCTGTTTACTATCGATGGAGTGTGAAGGATTGTATGTGAATTTGAGTTGTGCATTATCGACATAGTTATTCTTCTTTAAGCTTTACTTCCTAGTCGTCGTTCCTACAGGCGTTTCAATATACATGGCGAATTTCGGAGTATAATCGAGTCTTTTATCTATATAATCTGAAGTTTTATTACTTTCTTGCTCTAGTTTGATTGTTGATTTGAACAAATTCGAGTCTATAATGCGAAAAAATAATACAAATTTCAATTTATCTAGCCAGATTCAAGTCTCTCCAGGACTTACCTAGCTTTGGAAATATTAAAGAGGTATCCACTTTCTAAATGCACTTCAATTTTATTC TAGGATTAATTAAGATAATTATAAAGCTTTTACTGACGCTGACGTGGAAGTTTACGCCTTTCTTTTCACTCCACCTCCTCGCGGAGTCAAAAACAGGTAGGCGTCTCTTTGCTTCAAAAAAACAAAATTCCACCGTCGTCGCCGCCGATTTCTCTACCAAATCCCGGCACCTATTTTTCTGCGGATCCAAGCTTCAACACCTTCTTCTTCCTTCAGCCCTAGATCTCCGTTTATTACAGAGAAAGATGGCGTACGTGGACCATGCGTTTTCGATAACAGACGAAGACATTATGATGGATTCTCCCTTCACCGTCAACAATCGGCCTCCTATCAAGGAGATCGCTCTTGCTGTTTCTCTTCTCTTTTTTGGAATGATTGGAATCATCGTTGGTATCTTCATGGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGGGTGTTCTTCTCGTTGTTGGGAGCTCTCTTGTTTATTCCGGGTTTCTATTACACGCGGATTGCTTACTATGCGTACAAGGGTTACAAGGGTTTCTCCTTCTCCAACATACCGCCTGTCTAAATCCTCCAAGTCCAACCACTTCTCTACACTTGTACATATTTTCTTCTCCAGATTTCTTCACTCTCTACGCTGTTCCCCCCTCCCGCTTCTCCTTTTGACTACAACTAACACTATCTGTTTACTATCGATGGAGTGTGAAGGATTGTATGTGAATTTGAGTTGTGCATTATCGACATAGTTATTCTTCTTTAAGCTTTACTTCCTAGTCGTCGTTCCTACAGGCGTTTCAATATACATGGCGAATTTCGGAGTATAATCGAGTCTTTTATCTATATAATCTGAAGTTTTATTACTTTCTTGCTCTAGTTTGATTGTTGATTTGAACAAATTCGAGTCTATAATGCGAAAAAATAATACAAATTTCAATTTATCTAGCCAGATTCAAGTCTCTCCAGGACTTACCTAGCTTTGGAAATATTAAAGAGGTATCCACTTTCTAAATGCACTTCAATTTTATTC ATGGCGTACGTGGACCATGCGTTTTCGATAACAGACGAAGACATTATGATGGATTCTCCCTTCACCGTCAACAATCGGCCTCCTATCAAGGAGATCGCTCTTGCTGTTTCTCTTCTCTTTTTTGGAATGATTGGAATCATCGTTGGTATCTTCATGGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGGGTGTTCTTCTCGTTGTTGGGAGCTCTCTTGTTTATTCCGGGTTTCTATTACACGCGGATTGCTTACTATGCGTACAAGGGTTACAAGGGTTTCTCCTTCTCCAACATACCGCCTGTCTAA MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLFFGMIGIIVGIFMASNRVGGDRAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV Homology
BLAST of Cp4.1LG04g13270 vs. ExPASy Swiss-Prot
Match: Q5R8X3 (Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. ExPASy Swiss-Prot
Match: Q5ZLH4 (Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10 Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. ExPASy Swiss-Prot
Match: Q96A57 (Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. ExPASy Swiss-Prot
Match: Q8CIB6 (Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. ExPASy Swiss-Prot
Match: Q5BJP5 (Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. NCBI nr
Match: XP_022931504.1 (transmembrane protein 230-like [Cucurbita moschata] >XP_022972056.1 transmembrane protein 230-like [Cucurbita maxima] >XP_023529399.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo] >KAG6587719.1 Transmembrane protein 230, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 209 bits (531), Expect = 5.54e-68 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. NCBI nr
Match: KAG7021684.1 (Transmembrane protein-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 208 bits (530), Expect = 7.87e-68 Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. NCBI nr
Match: XP_038879685.1 (transmembrane protein 230 [Benincasa hispida]) HSP 1 Score: 204 bits (518), Expect = 5.33e-66 Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. NCBI nr
Match: XP_008453547.1 (PREDICTED: transmembrane protein 230-like [Cucumis melo]) HSP 1 Score: 202 bits (515), Expect = 1.53e-65 Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. NCBI nr
Match: XP_004146339.1 (transmembrane protein 230 [Cucumis sativus] >KGN65495.1 hypothetical protein Csa_019721 [Cucumis sativus]) HSP 1 Score: 201 bits (511), Expect = 6.24e-65 Identity = 99/103 (96.12%), Postives = 99/103 (96.12%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. ExPASy TrEMBL
Match: A0A6J1I4W8 (Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111470698 PE=3 SV=1) HSP 1 Score: 209 bits (531), Expect = 2.68e-68 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. ExPASy TrEMBL
Match: A0A6J1EUE9 (Transmembrane protein 230 OS=Cucurbita moschata OX=3662 GN=LOC111437657 PE=3 SV=1) HSP 1 Score: 209 bits (531), Expect = 2.68e-68 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. ExPASy TrEMBL
Match: A0A1S3BWL2 (Transmembrane protein 230 OS=Cucumis melo OX=3656 GN=LOC103494229 PE=3 SV=1) HSP 1 Score: 202 bits (515), Expect = 7.41e-66 Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. ExPASy TrEMBL
Match: A0A0A0LUC1 (Transmembrane protein 230 OS=Cucumis sativus OX=3659 GN=Csa_1G426960 PE=3 SV=1) HSP 1 Score: 201 bits (511), Expect = 3.02e-65 Identity = 99/103 (96.12%), Postives = 99/103 (96.12%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. ExPASy TrEMBL
Match: A0A6J1JDX9 (Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111484930 PE=3 SV=1) HSP 1 Score: 198 bits (503), Expect = 5.02e-64 Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. TAIR 10
Match: AT4G29850.1 (Eukaryotic protein of unknown function (DUF872) ) HSP 1 Score: 178.3 bits (451), Expect = 3.1e-45 Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. TAIR 10
Match: AT2G19350.1 (Eukaryotic protein of unknown function (DUF872) ) HSP 1 Score: 169.5 bits (428), Expect = 1.4e-42 Identity = 79/103 (76.70%), Postives = 92/103 (89.32%), Query Frame = 0
BLAST of Cp4.1LG04g13270 vs. TAIR 10
Match: AT3G29170.1 (Eukaryotic protein of unknown function (DUF872) ) HSP 1 Score: 70.1 bits (170), Expect = 1.2e-12 Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|