Cp4.1LG04g12970 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGACGAGAAAGATGATGCCGAATTTGTGCTGCCTTTGGATAATCTTCCATCCAGATGCTCATCTTTGGGTTGCTCCTCTCGTTTGTACTACTACAGGCGAACCACGGAAGGGGTTCCCTTTCAGTGGGAGATGCAACCGGGGACCCCCAAGGATCAGCCATACACGGAGGCTGTTACGCTGCTCATCACTCCACCGCCGGCTGCGCTCAGCCTACGCCCGCCGAAGCCAGCGAGGACTCAGGGTAAACAATCGTTGTTTCTGTTGTTTAGGCCGTGGAGGAAGCAGTCCAAGTCCAAGAAGCATTCTTGTCTGTCGGATGAGTTTGAGGATGGACGTTCGAGATTTGGGTCTTGTGGGTCCCAATGTGAGTTTATCCAATCACCATGCCAGCCAAAATCTTCTTCTTCTTCTTCTTCTTGGTCGTCGTTGCCGGCGGCGGAATCTTCCGCTCACCGGCGGTTGGGATGCGGTCCGTGGAGGATCAACCCACTAAGAATTGCTATTGGAAGGCGAGTTTGA ATGAAGGACGAGAAAGATGATGCCGAATTTGTGCTGCCTTTGGATAATCTTCCATCCAGATGCTCATCTTTGGGTTGCTCCTCTCGTTTGTACTACTACAGGCGAACCACGGAAGGGGTTCCCTTTCAGTGGGAGATGCAACCGGGGACCCCCAAGGATCAGCCATACACGGAGGCTGTTACGCTGCTCATCACTCCACCGCCGGCTGCGCTCAGCCTACGCCCGCCGAAGCCAGCGAGGACTCAGGGTAAACAATCGTTGTTTCTGTTGTTTAGGCCGTGGAGGAAGCAGTCCAAGTCCAAGAAGCATTCTTGTCTGTCGGATGAGTTTGAGGATGGACGTTCGAGATTTGGGTCTTGTGGGTCCCAATGTGAGTTTATCCAATCACCATGCCAGCCAAAATCTTCTTCTTCTTCTTCTTCTTGGTCGTCGTTGCCGGCGGCGGAATCTTCCGCTCACCGGCGGTTGGGATGCGGTCCGTGGAGGATCAACCCACTAAGAATTGCTATTGGAAGGCGAGTTTGA ATGAAGGACGAGAAAGATGATGCCGAATTTGTGCTGCCTTTGGATAATCTTCCATCCAGATGCTCATCTTTGGGTTGCTCCTCTCGTTTGTACTACTACAGGCGAACCACGGAAGGGGTTCCCTTTCAGTGGGAGATGCAACCGGGGACCCCCAAGGATCAGCCATACACGGAGGCTGTTACGCTGCTCATCACTCCACCGCCGGCTGCGCTCAGCCTACGCCCGCCGAAGCCAGCGAGGACTCAGGGTAAACAATCGTTGTTTCTGTTGTTTAGGCCGTGGAGGAAGCAGTCCAAGTCCAAGAAGCATTCTTGTCTGTCGGATGAGTTTGAGGATGGACGTTCGAGATTTGGGTCTTGTGGGTCCCAATGTGAGTTTATCCAATCACCATGCCAGCCAAAATCTTCTTCTTCTTCTTCTTCTTGGTCGTCGTTGCCGGCGGCGGAATCTTCCGCTCACCGGCGGTTGGGATGCGGTCCGTGGAGGATCAACCCACTAAGAATTGCTATTGGAAGGCGAGTTTGA MKDEKDDAEFVLPLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKDQPYTEAVTLLITPPPAALSLRPPKPARTQGKQSLFLLFRPWRKQSKSKKHSCLSDEFEDGRSRFGSCGSQCEFIQSPCQPKSSSSSSSWSSLPAAESSAHRRLGCGPWRINPLRIAIGRRV Homology
BLAST of Cp4.1LG04g12970 vs. NCBI nr
Match: XP_023530969.1 (uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 356 bits (913), Expect = 6.11e-124 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. NCBI nr
Match: XP_023007086.1 (uncharacterized protein LOC111499680 [Cucurbita maxima]) HSP 1 Score: 339 bits (870), Expect = 2.13e-117 Identity = 167/174 (95.98%), Postives = 170/174 (97.70%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. NCBI nr
Match: KAG6587751.1 (hypothetical protein SDJN03_16316, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 339 bits (870), Expect = 2.21e-117 Identity = 166/174 (95.40%), Postives = 169/174 (97.13%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. NCBI nr
Match: XP_022930189.1 (uncharacterized protein LOC111436686 [Cucurbita moschata]) HSP 1 Score: 336 bits (862), Expect = 3.54e-116 Identity = 166/174 (95.40%), Postives = 169/174 (97.13%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. NCBI nr
Match: KAG7021722.1 (Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 338 bits (866), Expect = 1.44e-112 Identity = 165/173 (95.38%), Postives = 168/173 (97.11%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. ExPASy TrEMBL
Match: A0A6J1KZJ1 (uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680 PE=4 SV=1) HSP 1 Score: 339 bits (870), Expect = 1.03e-117 Identity = 167/174 (95.98%), Postives = 170/174 (97.70%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. ExPASy TrEMBL
Match: A0A6J1EQV3 (uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC111436686 PE=4 SV=1) HSP 1 Score: 336 bits (862), Expect = 1.71e-116 Identity = 166/174 (95.40%), Postives = 169/174 (97.13%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. ExPASy TrEMBL
Match: A0A0A0LUL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1) HSP 1 Score: 177 bits (450), Expect = 8.55e-54 Identity = 107/181 (59.12%), Postives = 125/181 (69.06%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. ExPASy TrEMBL
Match: A0A5D3CJV8 (Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00380 PE=4 SV=1) HSP 1 Score: 148 bits (374), Expect = 1.45e-42 Identity = 90/156 (57.69%), Postives = 104/156 (66.67%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. ExPASy TrEMBL
Match: A0A7J8QPM3 (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=Gorai_003664 PE=4 SV=1) HSP 1 Score: 112 bits (280), Expect = 5.95e-28 Identity = 75/175 (42.86%), Postives = 99/175 (56.57%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. TAIR 10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 55.5 bits (132), Expect = 5.1e-08 Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. TAIR 10
Match: AT4G25850.2 (OSBP(oxysterol binding protein)-related protein 4B ) HSP 1 Score: 55.5 bits (132), Expect = 5.1e-08 Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 0
BLAST of Cp4.1LG04g12970 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 49.3 bits (116), Expect = 3.7e-06 Identity = 34/91 (37.36%), Postives = 46/91 (50.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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