Cp4.1LG04g12530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g12530
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cp4.1LG04: 8010354 .. 8012508 (+)
RNA-Seq Expression	Cp4.1LG04g12530
Synteny	Cp4.1LG04g12530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATATCTCTTATCTGCAATCATGAGATCCACGTGGAGAGTTGTAATTGGGCAGTGAGATCCCAGCCCAATCCAAAACCTGGGACATGTCGAATCTGAACCAGAATTTAGATTCTAGCTCCCTTCTCTCTCCAACCAGTGGCTTATCTCTTTCCTTCCTATTTCCATTTTAGCCTTCTTCCCTCTCCTCTCGCATCACTCCACTGCCCATTTTGAAGCCTGCTTCTCTGCAACAAAGCTATGGCCACTCAGGCTCTTGTTTCATCCTCGTCTTTGACCTCTTCAGTGGGCGCTGCCAGACAGCGATTAGGACCAAAGCCCTCCCTTGGTTCCTCCAGAAAGGCAGCTTCTTTCGTTGTTAGAGCTGAAGCCACTCCTCCTGTTAAGGTAATGAATAAGATATTAATTACTTGTTCTTATTCGTCCGAGTTGGTTTAGTTGTGATCTAATGTTTGTTATCGTTGCAGCAAGGAGCTAACAGACAATTATGGTTCGCTTCTAAACAAAGTCTTACGTATTTGGATGGAAGGTATATTAAACCGTTGTTCGGAAAGAATCTTTGATTTCGGTGTGATTTAATAAACTTGACTTAGTAAAAGAAGTTTTTGACTCGAAAGAAAGTTTAGGAAATTTGTTAACGTCTTCTCTGATATAAATACTCGAGATGTATGCTCTTTTTACACCAACAAAGAGAATAAAGGCTTAAGATTTCTTTGTTTCAAAAGATCTCTCCCCTCTTATTTTATTGTTTTATTTGTTTCGACATATTTGGATCGTGGGTCGTATCTAACATTATTGTTTCTTATTCTTAGAAACATGATAAACGAGTGTCTTAAATTGTAAAATCTTCACGCAGTATGAAACTAAGTCATGTGATTTAAATTACTTGGTTTGATTGATAGTCTTTCGGGCGATTAAGGATTTGATCCATTGGGACTATCAGACCCTGTTCTTTTTGTTCTTTTGTTCGTTTTGACGTATTTTAATCATGGGTCATATCCAACATTCATGTCTCATGTTTTTAAAAACATGACAAACGAGTATCTTAAATGGTAAAAGCTTCACGGGATCTAAAACTAAGTCATGTGATTTGAATTATTTGGTTTGATTGATAGTCTTCTGGGCGATTAAGGATATGATCTATTGGGACTATCAGACTTTGTTTTTTTTGTTCTTATATTTGTTTCGACATATTTCGATCATGGATCATATCCAACATTCATGTCTCCTGTTCTTAGAAACATGACAAACGAGTGTCTTAAATAGTAAAAGCTTCCCAGGATATGAAACTAAGTCGTGTGATTTGAATTACTTGTTTTGATTGATTATAGTCTTCCGGGCGATTACGGGTTCGATCCATTGGGACTATCAGACCCCGAGGGCACAGGAGGGTTCATCGAGCCGAAATGGTTGGCATACGGCGAGGTGATCAACGGGAGGTTCGCGATGTTAGGAGCCGCTGGAGCCATTGCCCCAGAGATCTTTGGATCACTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGAGTGATCCCACCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACACTGTTTGTGCTTGAGATGGCTCTAATGGGTTTTGCTGAACACAGAAGATTTCAAGATTGGTACAACCCAGGATCCATGGGAAAGCAATACTTTTTAGGGTTAGAGAAGTTCTTGGGTGGGTCAGGTGACCCTGCTTACCCAGGTGGCCCCTTGTTCAACCCTTTAGGGTTTGGGAAAGATGAGAAATCAATGAAGGAATTGAAGCTGAAGGAGATCAAGAATGGGAGGCTTGCAATGTTGGCTATCTTGGGTTACTTCATACAAGGCCTTGTCACTGGCGTTGGCCCTTACCAAAACCTTTTGGATCACTTGTCTGACCCTGTCAACAACAACGTTTTGACAAGCCTCAAGTTCCACTAGAATGGGATGTGTGATTTGTAATTTGTGTATTATAAACTTGTCTCCCACTCTCTATTGTAGCATGAATTGAGGATAAACTTTTCTGTGATACCCTTCTGATGTTCTTCATCGTAAGAATATTGCGAGATAGCTCGACTCATCGATTTCGTTTTCTTTTATTAGAGTTGATCGTATATATGCTACCTAATTCAATCATTCAAGACAAATA

mRNA sequence

ACAATATCTCTTATCTGCAATCATGAGATCCACGTGGAGAGTTGTAATTGGGCAGTGAGATCCCAGCCCAATCCAAAACCTGGGACATGTCGAATCTGAACCAGAATTTAGATTCTAGCTCCCTTCTCTCTCCAACCAGTGGCTTATCTCTTTCCTTCCTATTTCCATTTTAGCCTTCTTCCCTCTCCTCTCGCATCACTCCACTGCCCATTTTGAAGCCTGCTTCTCTGCAACAAAGCTATGGCCACTCAGGCTCTTGTTTCATCCTCGTCTTTGACCTCTTCAGTGGGCGCTGCCAGACAGCGATTAGGACCAAAGCCCTCCCTTGGTTCCTCCAGAAAGGCAGCTTCTTTCGTTGTTAGAGCTGAAGCCACTCCTCCTGTTAAGCAAGGAGCTAACAGACAATTATGGTTCGCTTCTAAACAAAGTCTTACTCTTCCGGGCGATTACGGGTTCGATCCATTGGGACTATCAGACCCCGAGGGCACAGGAGGGTTCATCGAGCCGAAATGGTTGGCATACGGCGAGGTGATCAACGGGAGGTTCGCGATGTTAGGAGCCGCTGGAGCCATTGCCCCAGAGATCTTTGGATCACTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGAGTGATCCCACCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACACTGTTTGTGCTTGAGATGGCTCTAATGGGTTTTGCTGAACACAGAAGATTTCAAGATTGGTACAACCCAGGATCCATGGGAAAGCAATACTTTTTAGGGTTAGAGAAGTTCTTGGGTGGGTCAGGTGACCCTGCTTACCCAGGTGGCCCCTTGTTCAACCCTTTAGGGTTTGGGAAAGATGAGAAATCAATGAAGGAATTGAAGCTGAAGGAGATCAAGAATGGGAGGCTTGCAATGTTGGCTATCTTGGGTTACTTCATACAAGGCCTTGTCACTGGCGTTGGCCCTTACCAAAACCTTTTGGATCACTTGTCTGACCCTGTCAACAACAACGTTTTGACAAGCCTCAAGTTCCACTAGAATGGGATGTGTGATTTGTAATTTGTGTATTATAAACTTGTCTCCCACTCTCTATTGTAGCATGAATTGAGGATAAACTTTTCTGTGATACCCTTCTGATGTTCTTCATCGTAAGAATATTGCGAGATAGCTCGACTCATCGATTTCGTTTTCTTTTATTAGAGTTGATCGTATATATGCTACCTAATTCAATCATTCAAGACAAATA

Coding sequence (CDS)

ATGGCCACTCAGGCTCTTGTTTCATCCTCGTCTTTGACCTCTTCAGTGGGCGCTGCCAGACAGCGATTAGGACCAAAGCCCTCCCTTGGTTCCTCCAGAAAGGCAGCTTCTTTCGTTGTTAGAGCTGAAGCCACTCCTCCTGTTAAGCAAGGAGCTAACAGACAATTATGGTTCGCTTCTAAACAAAGTCTTACTCTTCCGGGCGATTACGGGTTCGATCCATTGGGACTATCAGACCCCGAGGGCACAGGAGGGTTCATCGAGCCGAAATGGTTGGCATACGGCGAGGTGATCAACGGGAGGTTCGCGATGTTAGGAGCCGCTGGAGCCATTGCCCCAGAGATCTTTGGATCACTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGAGTGATCCCACCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACACTGTTTGTGCTTGAGATGGCTCTAATGGGTTTTGCTGAACACAGAAGATTTCAAGATTGGTACAACCCAGGATCCATGGGAAAGCAATACTTTTTAGGGTTAGAGAAGTTCTTGGGTGGGTCAGGTGACCCTGCTTACCCAGGTGGCCCCTTGTTCAACCCTTTAGGGTTTGGGAAAGATGAGAAATCAATGAAGGAATTGAAGCTGAAGGAGATCAAGAATGGGAGGCTTGCAATGTTGGCTATCTTGGGTTACTTCATACAAGGCCTTGTCACTGGCGTTGGCCCTTACCAAAACCTTTTGGATCACTTGTCTGACCCTGTCAACAACAACGTTTTGACAAGCCTCAAGTTCCACTAG

Protein sequence

MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFASKQSLTLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH

Homology

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BLAST of Cp4.1LG04g12530 vs. ExPASy Swiss-Prot
Match: P27522 (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB8 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 5.0e-132
Identity = 237/274 (86.50%), Postives = 249/274 (90.88%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQAL+SSSS+++S  AARQ +G + S   +RK ASFVVRA +TPPVKQGANRQLWFAS
Sbjct: 1   MATQALISSSSISTSAEAARQIIGSRISQSVTRK-ASFVVRAASTPPVKQGANRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+     LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
            G  GLIP ETAL WF+TGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDW  PGS
Sbjct: 121 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEK LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 270
           FIQ LVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 FIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Cp4.1LG04g12530 vs. ExPASy Swiss-Prot
Match: Q9SY97 (Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA3 PE=1 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 4.2e-131
Identity = 233/274 (85.04%), Postives = 245/274 (89.42%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MA QALV SSSLTSSV  ARQ  G KP   +S+K +SFVV+A ATPPVKQGANR LWFAS
Sbjct: 1   MAAQALV-SSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFAS 60

Query: 61  KQSL-----TLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
            QSL     +LPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGRFAMLGAAGAIAPEI
Sbjct: 61  SQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
            G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDWYNPGS
Sbjct: 121 LGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEK L GSG+PAYPGGP FNPLGFGKDEKS+KELKLKE+KNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 270
           FIQGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

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BLAST of Cp4.1LG04g12530 vs. ExPASy Swiss-Prot
Match: Q32904 (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum OX=3888 GN=lhca3 PE=1 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 1.9e-123
Identity = 226/278 (81.29%), Postives = 240/278 (86.33%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPK---PSLGSSRKAASFVVRAEATPPVKQ-GANRQL 60
           MATQALVSSSSLT +  A RQ    +    S+G SRK    +VRA ATPPVKQ G +R L
Sbjct: 1   MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKG---LVRAAATPPVKQGGVDRPL 60

Query: 61  WFASKQSL-----TLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAI 120
           WFASKQSL     +LPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGA GAI
Sbjct: 61  WFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAI 120

Query: 121 APEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWY 180
           APE  G +GLIP ETAL WF+TGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDW 
Sbjct: 121 APEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWA 180

Query: 181 NPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLA 240
            PGSMGKQYFLGLEK  GGSG+PAYPGGP FNPLGFGKDEKS+KELKLKE+KNGRLAMLA
Sbjct: 181 KPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLA 240

Query: 241 ILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 270
           ILGYFIQGLVTGVGPYQNLLDH++DPVNNNVLTSLKFH
Sbjct: 241 ILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275

[Close]

BLAST of Cp4.1LG04g12530 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.0e-41
Identity = 93/205 (45.37%), Postives = 130/205 (63.41%), Query Frame = 0


Query: 66  LPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPP 125
           L GDYGFDPLGL  DPE        KW    E+++ RFAMLG AG +  ++  + G+   
Sbjct: 63  LAGDYGFDPLGLGEDPESL------KWYVQAELVHSRFAMLGVAGILFTDLLRTTGI--- 122

Query: 126 ETALP-WFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGSMGKQ--YF 185
              LP W++ G +     +++ A   TL V++  LMGFAE +R+ D+ +PGS  K+  +F
Sbjct: 123 -RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFF 182

Query: 186 LGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLV 245
            GLE  L G  +P YPGGPL NPLG  KD ++  + KLKEIKNGRLAM+A+LG+F+Q  V
Sbjct: 183 FGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASV 242

Query: 246 TGVGPYQNLLDHLSDPVNNNVLTSL 267
           T  GP  NL++HLS+P +  ++ +L
Sbjct: 243 THTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of Cp4.1LG04g12530 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.3e-38
Identity = 116/264 (43.94%), Postives = 145/264 (54.92%), Query Frame = 0


Query: 12  LTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLW---FASKQSLT--L 71
           LT S G   + L    S+GSS K +SF V A      K+G     W    AS   LT  L
Sbjct: 23  LTGSSGRLNRDLS-FTSIGSSAKTSSFKVEA------KKGE----WLPGLASPDYLTGSL 82

Query: 72  PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLI-PP 131
            GD GFDPLGL+ DPE        KW    E++NGR+AMLG AG + PE+F  +G+I  P
Sbjct: 83  AGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVP 142

Query: 132 ETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGSMG-----KQ 191
           E    W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+      KQ
Sbjct: 143 E----WY------DAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 202

Query: 192 YFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQG 251
           Y L         G+  YPGG +FNPL F   +    E K KE+ NGRLAMLA LG+ +Q 
Sbjct: 203 YSL-------PKGEVGYPGG-IFNPLNFAPTQ----EAKEKELANGRLAMLAFLGFVVQH 247

Query: 252 LVTGVGPYQNLLDHLSDPVNNNVL 264
            VTG GP++NLL HLSDP +N ++
Sbjct: 263 NVTGKGPFENLLQHLSDPWHNTIV 247

[Close]

BLAST of Cp4.1LG04g12530 vs. NCBI nr
Match: XP_023006167.1 (chlorophyll a-b binding protein 8, chloroplastic [Cucurbita maxima] >XP_023531157.1 chlorophyll a-b binding protein 8, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 539 bits (1389), Expect = 2.87e-193
Identity = 269/274 (98.18%), Postives = 269/274 (98.18%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS
Sbjct: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLT     LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
           FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274

[Close]

BLAST of Cp4.1LG04g12530 vs. NCBI nr
Match: XP_022933380.1 (chlorophyll a-b binding protein 8, chloroplastic [Cucurbita moschata] >KAG6588241.1 Chlorophyll a-b binding protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022157.1 Chlorophyll a-b binding protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 536 bits (1382), Expect = 3.36e-192
Identity = 267/274 (97.45%), Postives = 268/274 (97.81%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS
Sbjct: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLT     LPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWYNPGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
           FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274

[Close]

BLAST of Cp4.1LG04g12530 vs. NCBI nr
Match: XP_008450298.1 (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis melo] >TYK28122.1 chlorophyll a-b binding protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 515 bits (1327), Expect = 7.84e-184
Identity = 259/274 (94.53%), Postives = 263/274 (95.99%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSS LTSSVGAARQRLG KPS GSSRK+ASFVVRA ATPPVKQGA+RQLWFAS
Sbjct: 1   MATQALVSSS-LTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLT     LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
           FIQGLVTGVGPYQNLLDHLSDPVNNN+LTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

[Close]

BLAST of Cp4.1LG04g12530 vs. NCBI nr
Match: XP_038879830.1 (photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 514 bits (1323), Expect = 3.19e-183
Identity = 256/274 (93.43%), Postives = 263/274 (95.99%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSS LTSSVGAARQRLG KPS GSSRKAASFVVRAEATPPVKQGA+RQLWFAS
Sbjct: 1   MATQALVSSS-LTSSVGAARQRLGAKPSFGSSRKAASFVVRAEATPPVKQGADRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+     LPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
           F+QGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of Cp4.1LG04g12530 vs. NCBI nr
Match: XP_004139075.1 (chlorophyll a-b binding protein 8, chloroplastic [Cucumis sativus] >KGN66578.1 hypothetical protein Csa_006962 [Cucumis sativus])

HSP 1 Score: 513 bits (1321), Expect = 6.44e-183
Identity = 257/274 (93.80%), Postives = 263/274 (95.99%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSS LTSSVGAARQRLG +PS GSSRK+ASFVVRAEATPPVKQGA+RQLWFAS
Sbjct: 1   MATQALVSSS-LTSSVGAARQRLGARPSFGSSRKSASFVVRAEATPPVKQGADRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+     LPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
           FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of Cp4.1LG04g12530 vs. ExPASy TrEMBL
Match: A0A6J1KV56 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498983 PE=3 SV=1)

HSP 1 Score: 539 bits (1389), Expect = 1.39e-193
Identity = 269/274 (98.18%), Postives = 269/274 (98.18%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS
Sbjct: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLT     LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
           FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274

[Close]

BLAST of Cp4.1LG04g12530 vs. ExPASy TrEMBL
Match: A0A6J1F4Q9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111440812 PE=3 SV=1)

HSP 1 Score: 536 bits (1382), Expect = 1.62e-192
Identity = 267/274 (97.45%), Postives = 268/274 (97.81%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS
Sbjct: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLT     LPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWYNPGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
           FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274

[Close]

BLAST of Cp4.1LG04g12530 vs. ExPASy TrEMBL
Match: A0A5D3DX73 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00280 PE=3 SV=1)

HSP 1 Score: 515 bits (1327), Expect = 3.80e-184
Identity = 259/274 (94.53%), Postives = 263/274 (95.99%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSS LTSSVGAARQRLG KPS GSSRK+ASFVVRA ATPPVKQGA+RQLWFAS
Sbjct: 1   MATQALVSSS-LTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLT     LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
           FIQGLVTGVGPYQNLLDHLSDPVNNN+LTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

[Close]

BLAST of Cp4.1LG04g12530 vs. ExPASy TrEMBL
Match: A0A1S3BPK7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491949 PE=3 SV=1)

HSP 1 Score: 515 bits (1327), Expect = 3.80e-184
Identity = 259/274 (94.53%), Postives = 263/274 (95.99%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSS LTSSVGAARQRLG KPS GSSRK+ASFVVRA ATPPVKQGA+RQLWFAS
Sbjct: 1   MATQALVSSS-LTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLT     LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
           FIQGLVTGVGPYQNLLDHLSDPVNNN+LTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

[Close]

BLAST of Cp4.1LG04g12530 vs. ExPASy TrEMBL
Match: A0A0A0LXV0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G630330 PE=3 SV=1)

HSP 1 Score: 513 bits (1321), Expect = 3.12e-183
Identity = 257/274 (93.80%), Postives = 263/274 (95.99%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSS LTSSVGAARQRLG +PS GSSRK+ASFVVRAEATPPVKQGA+RQLWFAS
Sbjct: 1   MATQALVSSS-LTSSVGAARQRLGARPSFGSSRKSASFVVRAEATPPVKQGADRQLWFAS 60

Query: 61  KQSLT-----LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+     LPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
           FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of Cp4.1LG04g12530 vs. TAIR 10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 468.8 bits (1205), Expect = 3.0e-132
Identity = 233/274 (85.04%), Postives = 245/274 (89.42%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MA QALV SSSLTSSV  ARQ  G KP   +S+K +SFVV+A ATPPVKQGANR LWFAS
Sbjct: 1   MAAQALV-SSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFAS 60

Query: 61  KQSL-----TLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
            QSL     +LPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGRFAMLGAAGAIAPEI
Sbjct: 61  SQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
            G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDWYNPGS
Sbjct: 121 LGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEK L GSG+PAYPGGP FNPLGFGKDEKS+KELKLKE+KNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 270
           FIQGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Cp4.1LG04g12530 vs. TAIR 10
Match: AT1G61520.3 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 468.8 bits (1205), Expect = 3.0e-132
Identity = 233/274 (85.04%), Postives = 245/274 (89.42%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MA QALV SSSLTSSV  ARQ  G KP   +S+K +SFVV+A ATPPVKQGANR LWFAS
Sbjct: 1   MAAQALV-SSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFAS 60

Query: 61  KQSL-----TLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120
            QSL     +LPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGRFAMLGAAGAIAPEI
Sbjct: 61  SQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180
            G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDWYNPGS
Sbjct: 121 LGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEK L GSG+PAYPGGP FNPLGFGKDEKS+KELKLKE+KNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 270
           FIQGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Cp4.1LG04g12530 vs. TAIR 10
Match: AT1G61520.2 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 407.9 bits (1047), Expect = 6.3e-114
Identity = 190/215 (88.37%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 55  QLWFASKQSLTLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPE 114
           ++W  S  S +LPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGRFAMLGAAGAIAPE
Sbjct: 4   KIWRCSDSSCSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 63

Query: 115 IFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPG 174
           I G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDWYNPG
Sbjct: 64  ILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPG 123

Query: 175 SMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILG 234
           SMGKQYFLGLEK L GSG+PAYPGGP FNPLGFGKDEKS+KELKLKE+KNGRLAMLAILG
Sbjct: 124 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 183

Query: 235 YFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 270
           YFIQGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 184 YFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 218

[Close]

BLAST of Cp4.1LG04g12530 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-42
Identity = 93/205 (45.37%), Postives = 130/205 (63.41%), Query Frame = 0


Query: 66  LPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPP 125
           L GDYGFDPLGL  DPE        KW    E+++ RFAMLG AG +  ++  + G+   
Sbjct: 63  LAGDYGFDPLGLGEDPESL------KWYVQAELVHSRFAMLGVAGILFTDLLRTTGI--- 122

Query: 126 ETALP-WFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGSMGKQ--YF 185
              LP W++ G +     +++ A   TL V++  LMGFAE +R+ D+ +PGS  K+  +F
Sbjct: 123 -RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFF 182

Query: 186 LGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLV 245
            GLE  L G  +P YPGGPL NPLG  KD ++  + KLKEIKNGRLAM+A+LG+F+Q  V
Sbjct: 183 FGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASV 242

Query: 246 TGVGPYQNLLDHLSDPVNNNVLTSL 267
           T  GP  NL++HLS+P +  ++ +L
Sbjct: 243 THTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of Cp4.1LG04g12530 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-42
Identity = 93/205 (45.37%), Postives = 130/205 (63.41%), Query Frame = 0


Query: 66  LPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPP 125
           L GDYGFDPLGL  DPE        KW    E+++ RFAMLG AG +  ++  + G+   
Sbjct: 63  LAGDYGFDPLGLGEDPESL------KWYVQAELVHSRFAMLGVAGILFTDLLRTTGI--- 122

Query: 126 ETALP-WFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGSMGKQ--YF 185
              LP W++ G +     +++ A   TL V++  LMGFAE +R+ D+ +PGS  K+  +F
Sbjct: 123 -RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFF 182

Query: 186 LGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLV 245
            GLE  L G  +P YPGGPL NPLG  KD ++  + KLKEIKNGRLAM+A+LG+F+Q  V
Sbjct: 183 FGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASV 242

Query: 246 TGVGPYQNLLDHLSDPVNNNVLTSL 267
           T  GP  NL++HLS+P +  ++ +L
Sbjct: 243 THTGPIDNLVEHLSNPWHKTIIQTL 251

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g12530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27522	5.0e-132	86.50	Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
Q9SY97	4.2e-131	85.04	Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis ...	[more]
Q32904	1.9e-123	81.29	Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum OX=3888 GN=lhc...	[more]
Q9C639	4.0e-41	45.37	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
P27521	9.3e-38	43.94	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Cp4.1LG04g12530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006167.1	2.87e-193	98.18	chlorophyll a-b binding protein 8, chloroplastic [Cucurbita maxima] >XP_02353115...	[more]
XP_022933380.1	3.36e-192	97.45	chlorophyll a-b binding protein 8, chloroplastic [Cucurbita moschata] >KAG658824...	[more]
XP_008450298.1	7.84e-184	94.53	PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis melo] >TYK2...	[more]
XP_038879830.1	3.19e-183	93.43	photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Benincasa hisp...	[more]
XP_004139075.1	6.44e-183	93.80	chlorophyll a-b binding protein 8, chloroplastic [Cucumis sativus] >KGN66578.1 h...	[more]

BLAST of Cp4.1LG04g12530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KV56	1.39e-193	98.18	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1F4Q9	1.62e-192	97.45	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5D3DX73	3.80e-184	94.53	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BPK7	3.80e-184	94.53	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LXV0	3.12e-183	93.80	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]

BLAST of Cp4.1LG04g12530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61520.1	3.0e-132	85.04	photosystem I light harvesting complex gene 3	[more]
AT1G61520.3	3.0e-132	85.04	photosystem I light harvesting complex gene 3	[more]
AT1G61520.2	6.3e-114	88.37	photosystem I light harvesting complex gene 3	[more]
AT1G45474.1	2.9e-42	45.37	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	2.9e-42	45.37	photosystem I light harvesting complex gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 58..268 e-value: 1.0E-61 score: 210.3
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 65..238 e-value: 3.7E-44 score: 151.1
None	No IPR available	PANTHER	PTHR21649:SF120	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..268
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 65..265
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g12530.1	Cp4.1LG04g12530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding