Cp4.1LG04g12300 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g12300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG04: 8135837 .. 8136109 (-)
RNA-Seq ExpressionCp4.1LG04g12300
SyntenyCp4.1LG04g12300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGTCCGCGACACCACCGTCAGCCCTCCCAAGTACTTCCGCCGGAGCTGATCTCCGGCGAGGATCCCTCGCAGATCTTGGACTTCGGGCGGTCTGTTTCCGGAGCCTTTTCCGGCCAACGCCATCAAGCAGCACCTGAAGCTGCTGCTGCTGCTGCAAATGCCGCCGCCTCAACTGCCATTCAACGGTCCAAAACAGCCGCCAGCCAGGAGGTTTCCGGCGCCGAGCAGTTCCCTCAGCTGACCAAAACGCCGCCTTCCGCCGCTTGA

mRNA sequence

ATGCCTCGTCCGCGACACCACCGTCAGCCCTCCCAAGTACTTCCGCCGGAGCTGATCTCCGGCGAGGATCCCTCGCAGATCTTGGACTTCGGGCGGTCTGTTTCCGGAGCCTTTTCCGGCCAACGCCATCAAGCAGCACCTGAAGCTGCTGCTGCTGCTGCAAATGCCGCCGCCTCAACTGCCATTCAACGGTCCAAAACAGCCGCCAGCCAGGAGGTTTCCGGCGCCGAGCAGTTCCCTCAGCTGACCAAAACGCCGCCTTCCGCCGCTTGA

Coding sequence (CDS)

ATGCCTCGTCCGCGACACCACCGTCAGCCCTCCCAAGTACTTCCGCCGGAGCTGATCTCCGGCGAGGATCCCTCGCAGATCTTGGACTTCGGGCGGTCTGTTTCCGGAGCCTTTTCCGGCCAACGCCATCAAGCAGCACCTGAAGCTGCTGCTGCTGCTGCAAATGCCGCCGCCTCAACTGCCATTCAACGGTCCAAAACAGCCGCCAGCCAGGAGGTTTCCGGCGCCGAGCAGTTCCCTCAGCTGACCAAAACGCCGCCTTCCGCCGCTTGA

Protein sequence

MPRPRHHRQPSQVLPPELISGEDPSQILDFGRSVSGAFSGQRHQAAPEAAAAAANAAASTAIQRSKTAASQEVSGAEQFPQLTKTPPSAA
Homology
BLAST of Cp4.1LG04g12300 vs. NCBI nr
Match: KAG6588222.1 (hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (367), Expect = 2.48e-43
Identity = 83/93 (89.25%), Postives = 85/93 (91.40%), Query Frame = 0

Query: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFGRSVSGAFSGQRHQAAPEAAAAAA---NAA 60
          MPRPRHHRQPSQVLPPELISGEDPSQILDF R V+GAFSGQ HQAAPEAAAAAA   NAA
Sbjct: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFERPVAGAFSGQPHQAAPEAAAAAAAAANAA 60

Query: 61 ASTAIQRSKTAASQEVSGAEQFPQLTKTPPSAA 90
          AST IQ+SK AASQEVSGAEQFPQLTKTPPSAA
Sbjct: 61 ASTVIQQSKIAASQEVSGAEQFPQLTKTPPSAA 93

BLAST of Cp4.1LG04g12300 vs. NCBI nr
Match: KGN66547.1 (hypothetical protein Csa_007065 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 3.51e-24
Identity = 58/88 (65.91%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFGRSVSGAFSGQRHQAAPEAAAAAANAAAST 60
          MPRPRH RQ SQVLPP+ IS EDPSQILDF   V+GA SGQ HQ +   A AAA AAA+T
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60

Query: 61 AIQRSKTAASQEVSGAEQFPQLTKTPPS 88
           +QRSK  A QE SGA  F QL KT PS
Sbjct: 61 VLQRSKNPAGQEGSGAGHFSQLPKTAPS 88

BLAST of Cp4.1LG04g12300 vs. NCBI nr
Match: KAG6590166.1 (hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 3.96e-23
Identity = 60/90 (66.67%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFGRSVSGAFSGQRHQAAPEAAAAAANAAAST 60
          MPRPRH RQPSQVLPPELISG DPSQILDFG++V+   SGQ H+A  EAA   A AAA  
Sbjct: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKAT-EAATNVATAAA-- 60

Query: 61 AIQRSKTAASQEVSGAEQ--FPQLTKTPPS 88
           +QRSKT+  QE SG+    FPQL KTPPS
Sbjct: 61 VLQRSKTSGGQEGSGSGSGHFPQLPKTPPS 87

BLAST of Cp4.1LG04g12300 vs. ExPASy TrEMBL
Match: A0A0A0M0A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.70e-24
Identity = 58/88 (65.91%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFGRSVSGAFSGQRHQAAPEAAAAAANAAAST 60
          MPRPRH RQ SQVLPP+ IS EDPSQILDF   V+GA SGQ HQ +   A AAA AAA+T
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60

Query: 61 AIQRSKTAASQEVSGAEQFPQLTKTPPS 88
           +QRSK  A QE SGA  F QL KT PS
Sbjct: 61 VLQRSKNPAGQEGSGAGHFSQLPKTAPS 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6588222.12.48e-4389.25hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN66547.13.51e-2465.91hypothetical protein Csa_007065 [Cucumis sativus][more]
KAG6590166.13.96e-2366.67hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0M0A11.70e-2465.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g12300.1Cp4.1LG04g12300.1mRNA