Cp4.1LG04g12070 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCAAAGGAGGAAGAACAAGAAGAGGAACAAACCCAACACCTCCATTGAAGAAGACGAAGAAGAAGCTCAAGAACAGCACCAACAATGGCGGAAGAAGAAGAAGAAGAAGAAGAATCATAATGAGTAGTAAAATAAGAGAAGAAATTGAAGAAGCAGCAGCTTCAAGCTCCTCTGCCATGGCTGCCATTGATGAACAAGCTTCAAGCTCTGATTTTGAACACTGTAGCACTCCAAAAGCTGATAGATTTAAGATCCCAGAGATTCAAATTTGCCCACCAGCTCCAAAAAAACAGAGGCCCATTTCAAATTGTTCTTTGCAAAAGCATTCTCCAATTGCCTTCTTTGCTTCACCTGATATAGAGCTGTTCTTCTTCTTCTCACAATCAAATTAG ATGGCTTCCAAAGGAGGAAGAACAAGAAGAGGAACAAACCCAACACCTCCATTGAAGAAGACGAAGAAGAAGCTCAAGAACAGCACCAACAATGGCGGAAGAAGAAGAAGAAGAAGAAGAATCATAATGAGTAGTAAAATAAGAGAAGAAATTGAAGAAGCAGCAGCTTCAAGCTCCTCTGCCATGGCTGCCATTGATGAACAAGCTTCAAGCTCTGATTTTGAACACTGTAGCACTCCAAAAGCTGATAGATTTAAGATCCCAGAGATTCAAATTTGCCCACCAGCTCCAAAAAAACAGAGGCCCATTTCAAATTGTTCTTTGCAAAAGCATTCTCCAATTGCCTTCTTTGCTTCACCTGATATAGAGCTGTTCTTCTTCTTCTCACAATCAAATTAG ATGGCTTCCAAAGGAGGAAGAACAAGAAGAGGAACAAACCCAACACCTCCATTGAAGAAGACGAAGAAGAAGCTCAAGAACAGCACCAACAATGGCGGAAGAAGAAGAAGAAGAAGAAGAATCATAATGAGTAGTAAAATAAGAGAAGAAATTGAAGAAGCAGCAGCTTCAAGCTCCTCTGCCATGGCTGCCATTGATGAACAAGCTTCAAGCTCTGATTTTGAACACTGTAGCACTCCAAAAGCTGATAGATTTAAGATCCCAGAGATTCAAATTTGCCCACCAGCTCCAAAAAAACAGAGGCCCATTTCAAATTGTTCTTTGCAAAAGCATTCTCCAATTGCCTTCTTTGCTTCACCTGATATAGAGCTGTTCTTCTTCTTCTCACAATCAAATTAG MASKGGRTRRGTNPTPPLKKTKKKLKNSTNNGGRRRRRRRIIMSSKIREEIEEAAASSSSAMAAIDEQASSSDFEHCSTPKADRFKIPEIQICPPAPKKQRPISNCSLQKHSPIAFFASPDIELFFFFSQSN Homology
BLAST of Cp4.1LG04g12070 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.6e-09 Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. ExPASy Swiss-Prot
Match: Q3ECS5 (Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 GN=SMR9 PE=3 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07 Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. NCBI nr
Match: XP_023530358.1 (cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita pepo subsp. pepo] >KAG6588189.1 Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 249 bits (635), Expect = 6.46e-83 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. NCBI nr
Match: KAG7022087.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 243 bits (619), Expect = 1.72e-80 Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. NCBI nr
Match: KAG6590203.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023854.1 Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 118 bits (295), Expect = 3.12e-31 Identity = 74/132 (56.06%), Postives = 92/132 (69.70%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. NCBI nr
Match: XP_022154348.1 (cyclin-dependent protein kinase inhibitor SMR9-like [Momordica charantia]) HSP 1 Score: 104 bits (260), Expect = 6.46e-26 Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. NCBI nr
Match: KGN66487.1 (hypothetical protein Csa_006949 [Cucumis sativus]) HSP 1 Score: 97.8 bits (242), Expect = 4.02e-23 Identity = 70/143 (48.95%), Postives = 82/143 (57.34%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. ExPASy TrEMBL
Match: A0A6J1DK32 (cyclin-dependent protein kinase inhibitor SMR9-like OS=Momordica charantia OX=3673 GN=LOC111021634 PE=4 SV=1) HSP 1 Score: 104 bits (260), Expect = 3.13e-26 Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. ExPASy TrEMBL
Match: A0A0A0M041 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613590 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.95e-23 Identity = 70/143 (48.95%), Postives = 82/143 (57.34%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. ExPASy TrEMBL
Match: A0A6A1UIU7 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G007916 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 1.73e-20 Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. ExPASy TrEMBL
Match: A0A7J7DRJ7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00704 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 2.07e-20 Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. ExPASy TrEMBL
Match: A0A7N2KKU1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 2.38e-20 Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.2 bits (152), Expect = 1.9e-10 Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08 Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 0
BLAST of Cp4.1LG04g12070 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 41.6 bits (96), Expect = 5.8e-04 Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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