Cp4.1LG04g11800 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g11800
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribosome biogenesis regulatory protein
Location	Cp4.1LG04: 8504731 .. 8510251 (-)
RNA-Seq Expression	Cp4.1LG04g11800
Synteny	Cp4.1LG04g11800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTCGAACGGAAAAGGAAACGGAAGGACAGAGAAATCGGGGAAGGAAAAGAGCAAAAGCGGCAGCCGTTTTCTTCTCGATTCAGTCGGTTTGATCTGTCTTCGCCTCTCATTTCGCTACTTTATGCGTTTTCTTGTAACTTTCTGCGTTTTTTTTTTTTGTTGTAACTTTCTGCTTGTGCTTACGATCAGATCTTCTCGACTCTTAGAACATAATTTCGATTTGGATCTGAACTCTTTCATCTCTCTCTCTCTCTCTCTAAAAATTTGCAGAGAATCCGAATGATTTCTTCCTCTTTTGTAGAGATTTGCTGCAAGAATACAAAACTTACGCTCTTTCTTTCGAGGAAATGGCAGAAAAGAAGCATAAACATTTCCCCTCTCACTCTTAGGGTTGCAGAAACGAGAAATACAAGCCTCTCTCTCTCTATGAGAAGCTTCAGAGATCGAAATTCAAGTTCTATGTTCTTTCTCTCTCTAGAAAGTTCGCAACAACAGAGCAAATTTCCAGGTTAGTTGAGTTGCTCGAGTTTTTCAGGTGATCTAATGTCGAAATTCAAACATATCAAATGCGTGCACAGTGTTCAAGTTAAATGAATCATGTTTCGGTAGATCAAGTTCTCAGGTCGAACGAGTCTGTTAATATAACCGCTATTTTCACTTTCTCACATCCTGATTGAGGAAGGGTTATAGCTAACGAGGACGATCAGAATTTTAATTTAGAGAGAGGAAGACCGACTAGGCAACTTGAGACATAGTAAGAAAACATATTCACCGTTTTGGAAGCTCACGTCCTAAGGCGACAGCGTTGTAATATTAGAAAAAATGCAAAAGCCAACGAACCCTTCAGTGTAGCATTAAGAATTGCAAATTCAGACGGCACACGCTTTTGTAGATCAATTAATGTAGTTTTTTCCCAAATATTTACGCGTTAGAGCGCAACAACGACAACATATTCACCGTTTTGGAAGAGACTTTTGGGATCTCGACATAACCACACGCTCGCCTCTTACATAGGAGACAACTTTAGAGCATAAAGAACAGATATTCGAAACTCGAGATTCTAGAGACCGTACAAAAGGCAATATATCGCAATGTAGTCTTACAAATATATTTTCATGGATTAATTTGATTTCTTATTATAATTATTATTATTATTTTTTTTTTTTTTTTCAGAGAGAAAAAATATTTTAATTATCATATTTATTGAGTAAAAGAAAAGGTATAAAGTCATATTTATTAGATATTTTTAAAAAAATCATATATTAATTTAAGTTACGAAATTATATAAAGTATAAATAATAATTATTATTATTAAATAGAGAAGAAAACGGTAGCTAGGGTTTTAGAGATTAGTCCTCAGTCGTCGGCGGTTTACCAAAGCCTTACATTGCAGAATCATCGAACTCATAATCGGAAAAGGTTGTAAGGTGGCCGGAGCATGGAGACGGAGAATCAACAGCCGTTTCAGATCGACCTGGGGAATCTAATGGCGTTCAATCCTCACCATCAATTTCCTTCCCTCTCATCCTCCAGGTTAGTTGTTTTTCTCTCCCAAATTATACTCGGACGACGGATTCTTCTTGCAGTACGCACTCTCTCGCGAATTTTTACGAATATCGTATCTTAAGTAGCTAGATGAAACGAGGTTTGTAGAGAATTTTGCCCCGAATTTCTCGTGTTTTGTTACACTGAGGTTGAAGAACACTGGCGGGATGTATTTTTTGGCTTTGCGATCCTATGCTATTCACATTACGTTGTACTGTTTTCTGAAATTCGATGGTGCAGATTTTATGGCATTTGTTTCGCATACGATGAATTTCTAGTAGATATAAGCATTGGGTGCACGTTCGTGAACATTTATGTCTGCATTGGTGACTCTTAAGCGTTAAATTATTGCCAATTAAATTAGAAATCCTTAACCTGTGAATATTTATCTTCCTTCTTTGATGTTCGGAATATATAATTGCTTGTATTATTTGAAGAATACCGGTACCATCTTCGCCTAATTTATTTTTTTGTTTGATTATTAGGGAGGATCTAGTTAGTGAATGTCTGCAAAAGGGCGCAGAGTTAGCTCAATTTATTGCTAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGATGGTCCGCTCGTGAGGTTGCCTCCACCTTCTACACGATTGCCGAGAGAGAAACCTGTAAGGCTTCATGCTACTTTATAAATTTCTTCCCTTGGTAACCACTGTCACTGATCGTGCTGCATCCATGAGCAGCGGCTGCAAATGTTAATTTTGTAGTTCTTGGCTGAGATGATCTTTTCTTTTCTTTTTCCAGTTGCCAAAGCCCAAACCTCCTACAAAATGGGAGCTTTTTGCCAAAAAAAGAGGTCAGTTGCTTTGTGTGCCCTGTGCTAGGGTATATTTGATACAGCACATCCCCCNAACAAAATTAGTTAATCTGATAGCAATATATTTGTTTCCAAGTGGAACTTATTCATAATTATTGTTTTTTTCAAACTCTTGCAGGCATAAAGAATCGTAAAAAAGATAAGATAGTGTATGATGATCAGACGGGTTCATGGAAACGTCGCCATGGTTACGATCGTGCAAATGATGAGGAGAACATACCCATAATTGAGGCCAAGATGACTGATGGTAGTATTTTATGATGATTTGTTCTACTATCTATTTATTCTTTTTGTGAACATACCCATAATTGAGTCCAAGATGACCAGAAAGTTATGCTTTTGCTTTTTGTGAACTTGATTTGCAAATTTGCATAAAGCTGCAACATCCAGATAGCCAACTGATGATCCAATTTAATTACTGGTTTCTCTTTGTTCTTAAGACACGTAAAATTAGCTGAAATGGCTGTTAAGAGCATGGTTGATTTGTCTTGCAGAGCCCGGGGTGGATCCATTTGCTGCAAGGCGAGCCAATAAGAAAAGCCGAGTTGAAAAACAAGAAAGGAATCAGTTACAGAATCTGAAGAAGGCTGCAAAAGTTGGCGCTCTACCAAGGTTTTACCTCTCAAGACAGTTTTGGTTGTTGAATATGATATAAGTTGTACCCCACTTTGTTGTTTATACACGAGTTTCATTGAACTTTTTAACTTAGATCAACGTTTTCCAAAAAATGTTTTTGTCAACTACTCCATTTAAGACATCATCCATGCTGTTATTCTCAAGTTGCCCATCTTAGTGTTCATCTTCAATCATGTCTTCCTTTCCTTCCCGTCACAATCTGTTCTTGATAGCATAAAATTCACTGTATCAGTCACGTTCAACTAGCTGCCACTGCTTTGCCTATAACTGGAACTCAAGCTGCACCAAAGAAAATTACCAAGGATGAACTTGGAAACGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTAGCAGGAGAAAAACCTGCGAAACATCAAGGAAAATATCGCAAGGTTAACTGAACCAGCTTGTTGATGTACATTTTTGCTTTAGTTTACTTTATATTTATCGTAAAAAATTGTGATGCATTTTTTGTGTTTGGATGCAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGCTCTCAAGAAAGAGAGCAAACTGAGAAAGTTCTTAACAGATTAATTTCCAAGAATTCACACGAGATTCTCAATATTAATAAGGTTTGACTGCTAAACTGCACATTACATTTTAAAGGATGAACAAATGCATATATCTTATTTTTTGATGCTCCATGTAACTCTTGTGGTTTTAAAATGATTATTCGTACTCACGTGGCCTAAAACCACCGCCCTTTTTATTTTCTTGTAAATTCGTTTAGCTTGTTGAGTTATGCTCGTATTGATTGCCATTGTTATGCTTGAATATTATATGATTCAACATGATTTCTAATGGACCGTGTGATGTAAATAGATCATGACGTGATGGATATTTGTGTATATGAGTTATCATGCAAGTGAAGCTCATTACTTCTGAGAAGCAAATTGATTTTGTTATCACATTAAATTCTAAGCCTATTTTGGATTCCTCATCTTGATTTTCAGGCTGTCAACATGTACACTGTGAAAAAAGAAAAGAAACAAAGAAACCAACGAGGGAAGTCTTCATCAATGTCGAGCAACAAGTTGAAACCAAATAAGAAACTCCAGAAGAAGCCATTGAAGAAGGGATCTCCAAAGAATGGCAAGGCAAAATGAACGAATTTTCGCAATAGATCATGAGCTCTTGTAGAGGTGCGCGTGTTAGATTACATTCTGTCTGACATTCTGAATGTACCATTATTATCATTATTTAGTAGTGAAGAAAATTTTGAAATCATGTTTGTTTTCCCTATGATAGTCCTTTTAATGGCTTCGAAGCAATTATATAGTAGCTTTTTTACTTTGGTTTCTTAAATTTTAAATATGTTTAGTAGATCTAGCTGTCAAATATTTTAAAGAACACAGAGAATGTACACCGAAGATCATGAAATTCGTTCGAGATAGATAAATCAAACACAATTGTGCGTCTTAACCTGTCACCCTGTTAAATTATGTTTAAATTCGTAATGTAGACAGAATGTTTAATATCGATCGATCAAATTAATTGAAACTTTACTTAAATCTCGTCCTGAATATCTATGTAGATGAAAAATGCTCGTCTTACAAGTGATCGGACATCGTTTTACCAAAACTAACAAAGAAAAGCAAAACAAAACAACATTTTGTTCAAGAAGAAGAGACACTCACACTGCTACAAGGCCGCTGAAGGTGGTGGGCGTTCACATACCTGGTTTCCGCAATTCACTTTCGCCATGTGCAAAATGGCATCTTTCTCTAAACGTACAATTACCCTTTGCAAAATTAGCACAAAGCTTGGTCTTGAAGTTGTTTGCTGAGTGCTGAGAATGCTGCTGCTGCTGCCTCATGGCATTATTGGCAGAGGCTGCGCCGACGTTTGCAATCAACTCGCGCACCATTGAACTAGCAAGATTGATCTGATCAAACGTACCCTCGAGCTCAATGTTCTTCAAGCTAGAGTCTGACTCGTGATCTTTTATAGAAAGTCTTGCTCCTGTCATTCGACAGATATTCTTCGAGTTGACACCATTCTTCCCAATTATGGGACCTGCAAGCGATGCATCGACGCTAATCTTTGCTGTTGCAGACGCACCGAAGCTAGCAGCAGGTCCATGGTTGGGTTGTGGCGGAGGCACATTCCAGCCACCACCCATTCTGGGTTGTTGTGCTAGTGGTCCTCCTCCCATTCCACCGTGTTCTGGTGGAGGATTTGGCCTTCCAAGGTCCCACTCGCCATGAGCAAAATGGCATTTGTCACCGAATCTGCAGCCTTCGGCTGAGTTGAATTTGTTGCACAAACGTGTCTTGACAGCCGGAGGAGAAACACCATCTGGAAACGATGGAGGGGCGACAGGATTTCTAATGCCAGGGGAAATAGCAGGACTGTTCATCTGAGAAATTGCTTTGAATCCACCAGGAACATAATGTGCAAAATGACACCCCTCACCAAAAGGGCAACCAGAAGTGCTGCA

mRNA sequence

TGTTCGAACGGAAAAGGAAACGGAAGGACAGAGAAATCGGGGAAGGAAAAGAGCAAAAGCGGCAGCCGTTTTCTTCTCGATTCAAGAATCCGAATGATTTCTTCCTCTTTTGTAGAGATTTGCTGCAAGAATACAAAACTTACGCTCTTTCTTTCGAGGAAATGGCAGAAAAGAAGCATAAACATTTCCCCTCTCACTCTTAGGGTTGCAGAAACGAGAAATACAAGCCTCTCTCTCTCTATGAGAAGCTTCAGAGATCGAAATTCAAGTTCTATGTTCTTTCTCTCTCTAGAAAGTTCGCAACAACAGAGCAAATTTCCAGAATCATCGAACTCATAATCGGAAAAGGTTGTAAGGTGGCCGGAGCATGGAGACGGAGAATCAACAGCCGTTTCAGATCGACCTGGGGAATCTAATGGCGTTCAATCCTCACCATCAATTTCCTTCCCTCTCATCCTCCAGGGAGGATCTAGTTAGTGAATGTCTGCAAAAGGGCGCAGAGTTAGCTCAATTTATTGCTAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGATGGTCCGCTCGTGAGGTTGCCTCCACCTTCTACACGATTGCCGAGAGAGAAACCTTTGCCAAAGCCCAAACCTCCTACAAAATGGGAGCTTTTTGCCAAAAAAAGAGGCATAAAGAATCGTAAAAAAGATAAGATAGTGTATGATGATCAGACGGGTTCATGGAAACGTCGCCATGGTTACGATCGTGCAAATGATGAGGAGAACATACCCATAATTGAGGCCAAGATGACTGATGAGCCCGGGGTGGATCCATTTGCTGCAAGGCGAGCCAATAAGAAAAGCCGAGTTGAAAAACAAGAAAGGAATCAGTTACAGAATCTGAAGAAGGCTGCAAAAGTTGGCGCTCTACCAAGTCACGTTCAACTAGCTGCCACTGCTTTGCCTATAACTGGAACTCAAGCTGCACCAAAGAAAATTACCAAGGATGAACTTGGAAACGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTAGCAGGAGAAAAACCTGCGAAACATCAAGGAAAATATCGCAAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGCTCTCAAGAAAGAGAGCAAACTGAGAAAGTTCTTAACAGATTAATTTCCAAGAATTCACACGAGATTCTCAATATTAATAAGGCTGTCAACATGTACACTGTGAAAAAAGAAAAGAAACAAAGAAACCAACGAGGGAAGTCTTCATCAATGTCGAGCAACAAGTTGAAACCAAATAAGAAACTCCAGAAGAAGCCATTGAAGAAGGGATCTCCAAAGAATGGCAAGGCAAAATGAACGAATTTTCGCAATAGATCATGAGCTCTTGTAGAGATGAAAAATGCTCGTCTTACAAGTGATCGGACATCGTTTTACCAAAACTAACAAAGAAAAGCAAAACAAAACAACATTTTGTTCAAGAAGAAGAGACACTCACACTGCTACAAGGCCGCTGAAGGTGGTGGGCGTTCACATACCTGGTTTCCGCAATTCACTTTCGCCATGTGCAAAATGGCATCTTTCTCTAAACGTACAATTACCCTTTGCAAAATTAGCACAAAGCTTGGTCTTGAAGTTGTTTGCTGAGTGCTGAGAATGCTGCTGCTGCTGCCTCATGGCATTATTGGCAGAGGCTGCGCCGACGTTTGCAATCAACTCGCGCACCATTGAACTAGCAAGATTGATCTGATCAAACGTACCCTCGAGCTCAATGTTCTTCAAGCTAGAGTCTGACTCGTGATCTTTTATAGAAAGTCTTGCTCCTGTCATTCGACAGATATTCTTCGAGTTGACACCATTCTTCCCAATTATGGGACCTGCAAGCGATGCATCGACGCTAATCTTTGCTGTTGCAGACGCACCGAAGCTAGCAGCAGGTCCATGGTTGGGTTGTGGCGGAGGCACATTCCAGCCACCACCCATTCTGGGTTGTTGTGCTAGTGGTCCTCCTCCCATTCCACCGTGTTCTGGTGGAGGATTTGGCCTTCCAAGGTCCCACTCGCCATGAGCAAAATGGCATTTGTCACCGAATCTGCAGCCTTCGGCTGAGTTGAATTTGTTGCACAAACGTGTCTTGACAGCCGGAGGAGAAACACCATCTGGAAACGATGGAGGGGCGACAGGATTTCTAATGCCAGGGGAAATAGCAGGACTGTTCATCTGAGAAATTGCTTTGAATCCACCAGGAACATAATGTGCAAAATGACACCCCTCACCAAAAGGGCAACCAGAAGTGCTGCA

Coding sequence (CDS)

ATGGAGACGGAGAATCAACAGCCGTTTCAGATCGACCTGGGGAATCTAATGGCGTTCAATCCTCACCATCAATTTCCTTCCCTCTCATCCTCCAGGGAGGATCTAGTTAGTGAATGTCTGCAAAAGGGCGCAGAGTTAGCTCAATTTATTGCTAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGATGGTCCGCTCGTGAGGTTGCCTCCACCTTCTACACGATTGCCGAGAGAGAAACCTTTGCCAAAGCCCAAACCTCCTACAAAATGGGAGCTTTTTGCCAAAAAAAGAGGCATAAAGAATCGTAAAAAAGATAAGATAGTGTATGATGATCAGACGGGTTCATGGAAACGTCGCCATGGTTACGATCGTGCAAATGATGAGGAGAACATACCCATAATTGAGGCCAAGATGACTGATGAGCCCGGGGTGGATCCATTTGCTGCAAGGCGAGCCAATAAGAAAAGCCGAGTTGAAAAACAAGAAAGGAATCAGTTACAGAATCTGAAGAAGGCTGCAAAAGTTGGCGCTCTACCAAGTCACGTTCAACTAGCTGCCACTGCTTTGCCTATAACTGGAACTCAAGCTGCACCAAAGAAAATTACCAAGGATGAACTTGGAAACGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTAGCAGGAGAAAAACCTGCGAAACATCAAGGAAAATATCGCAAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGCTCTCAAGAAAGAGAGCAAACTGAGAAAGTTCTTAACAGATTAATTTCCAAGAATTCACACGAGATTCTCAATATTAATAAGGCTGTCAACATGTACACTGTGAAAAAAGAAAAGAAACAAAGAAACCAACGAGGGAAGTCTTCATCAATGTCGAGCAACAAGTTGAAACCAAATAAGAAACTCCAGAAGAAGCCATTGAAGAAGGGATCTCCAAAGAATGGCAAGGCAAAATGA

Protein sequence

METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK

Homology

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BLAST of Cp4.1LG04g11800 vs. ExPASy Swiss-Prot
Match: Q9SH88 (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 GN=At2g37990 PE=2 SV=2)

HSP 1 Score: 400.6 bits (1028), Expect = 1.7e-110
Identity = 209/321 (65.11%), Postives = 257/321 (80.06%), Query Frame = 0


Query: 2   ETENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTE 61
           E E +Q +Q+D+GNL+AFNP+H+FPS  SSR +LV E L +G +L Q IAN LFN PSTE
Sbjct: 4   EMETEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTE 63

Query: 62  DRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRR 121
             DGP+V+LPPP+T+LPREK +P+PKPPTKWE FA K+GI+ RKK+K+V+D+QT  +KRR
Sbjct: 64  TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123

Query: 122 HGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALP 181
           HGYDR ND+ ++PIIEAK +DEPGVDPFA R  +KK RV KQE+N+LQNLK A K GALP
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALP 183

Query: 182 SHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKY 241
           SHVQLAAT+LPI+GT+A PKKI KDELG+VAG+AATSTASGGKFDKKL GEKP K QGK+
Sbjct: 184 SHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKH 243

Query: 242 RKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKS 301
            K+LPVV G G  + E+EQT  VL+++ SK+SHEILN+ KA+NMY VKKEKK+       
Sbjct: 244 HKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK------- 303

Query: 302 SSMSSNKLKPNKKLQKKPLKK 323
            S  S+KLKP K + KKP  K
Sbjct: 304 -SGRSDKLKPKKDITKKPANK 316

[Close]

BLAST of Cp4.1LG04g11800 vs. ExPASy Swiss-Prot
Match: Q2KIH4 (Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-32
Identity = 114/321 (35.51%), Postives = 173/321 (53.89%), Query Frame = 0


Query: 10  QIDLGNLMAF--NPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPL 69
           + DLGNL+A   NP         ++E   +E      +  Q + N L+ LP+    +  +
Sbjct: 33  EFDLGNLLASDRNPPTGLRHAGPTQE---AELRALARDNTQLLINQLWQLPTERVEEALV 92

Query: 70  VRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRA 129
            RLP PSTRLPREKP+P+P+P T+W+ FA+ +GI+ +KK  +V+D+ +G W+RR GY RA
Sbjct: 93  ARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRWRRRWGYQRA 152

Query: 130 NDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQLA 189
            D+    +IE     +P  D FA R   KK RV K E N+L+NL +A K+  LPS     
Sbjct: 153 RDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS----- 212

Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPV 249
           A  +  TG Q      +K+ELG    +A  STAS G+F ++L  EK  +  GK RKF P+
Sbjct: 213 AAGMHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPL 272

Query: 250 VEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSSN 309
               G  + ER+   ++L  + SK     ++I +A N    ++++++  +R K S     
Sbjct: 273 F---GDFAAERKSQLEMLRVMNSKKPQ--MDITRATNKQMREEDQEEAAKRRKMS--QKG 331

Query: 310 KLKPNKKLQKKPLKKGSPKNG 329
           K K  ++      K G+P  G
Sbjct: 333 KRKGGRQGPGSKRKGGTPSQG 331

[Close]

BLAST of Cp4.1LG04g11800 vs. ExPASy Swiss-Prot
Match: Q9CYH6 (Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-32
Identity = 113/324 (34.88%), Postives = 174/324 (53.70%), Query Frame = 0


Query: 10  QIDLGNLMAF--NPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPL 69
           + DLGNL+A   NP         S E   +E      +  Q + N L+ LP+    +  +
Sbjct: 33  EFDLGNLLASDRNPPTVLRQAGPSPE---AELRALARDNTQLLINQLWRLPTERVEEAVV 92

Query: 70  VRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRA 129
            RLP P+TRLPREKPLP+P+P T+W+ FA+ +GI+ +KK  +V+D+ +G W+RR GY RA
Sbjct: 93  ARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRA 152

Query: 130 NDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQLA 189
            D+    +IE   + +P  D FA R   KK RV K E N+L+NL +A K+  +PS     
Sbjct: 153 RDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM-QMPS----- 212

Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPV 249
           +  L  TG Q      +K+ELG    +A  STAS G+F ++L  EK  +  GK RKF P+
Sbjct: 213 SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPL 272

Query: 250 VEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSSN 309
               G  + E++   ++L  + SK     L++ +A N    ++++++  +R K S     
Sbjct: 273 F---GDFAAEKKNQLELLRVMNSKKPR--LDVTRATNKQMREEDQEEAAKRRKMSQKGKR 332

Query: 310 K---LKPNKKLQKKPLKKGSPKNG 329
           K     P+ K +  P  +G  + G
Sbjct: 333 KGGRQGPSGKRKGGPPGQGEKRKG 336

[Close]

BLAST of Cp4.1LG04g11800 vs. ExPASy Swiss-Prot
Match: Q15050 (Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 PE=1 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 3.2e-32
Identity = 113/322 (35.09%), Postives = 172/322 (53.42%), Query Frame = 0


Query: 10  QIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPLVR 69
           Q DLGNL+A +  +    L  +     +E      +  Q + N L+ LP+    +  + R
Sbjct: 33  QFDLGNLLA-SDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQLPTERVEEAIVAR 92

Query: 70  LPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRAND 129
           LP P+TRLPREKPLP+P+P T+W+ FA+ +GI+ +KK  +V+D+ +G W+RR GY RA D
Sbjct: 93  LPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQRARD 152

Query: 130 EENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQLAAT 189
           +    +IE     +P  D FA R   KK RV K E N+L+NL +A K+  LPS     A 
Sbjct: 153 DTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS-----AA 212

Query: 190 ALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPVVE 249
            L  TG Q      +K+ELG    +A  STAS G+F ++L  EK  +  GK RKF P+  
Sbjct: 213 GLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPLF- 272

Query: 250 GTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSSNK- 309
             G  + E++   ++L  + SK     L++ +A N    ++++++  +R K S     K 
Sbjct: 273 --GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATNKQMREEDQEEAAKRRKMSQKGKRKG 332

Query: 310 --LKPNKKLQKKPLKKGSPKNG 329
               P  K +  P  +G  + G
Sbjct: 333 GRQGPGGKRKGGPPSQGGKRKG 336

[Close]

BLAST of Cp4.1LG04g11800 vs. ExPASy Swiss-Prot
Match: A1A5P2 (Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=Rrs1 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-31
Identity = 113/324 (34.88%), Postives = 174/324 (53.70%), Query Frame = 0


Query: 10  QIDLGNLMAF--NPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPL 69
           + DLGNL+A   NP         S E   +E      +  Q + N L+ LP+    +  +
Sbjct: 33  EFDLGNLLASDRNPPTVLRQAGPSPE---AELRALARDNTQLLVNQLWQLPTERVEEAVV 92

Query: 70  VRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRA 129
            RLP P+TRLPREKPLP+P+P T+W+ FA+ +GI+ +KK  +V+D+ +G W+RR GY RA
Sbjct: 93  ARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYKRA 152

Query: 130 NDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALPSHVQLA 189
            D+    +IE   + +P  D FA R   KK RV K E N+L+NL +A K+  +PS     
Sbjct: 153 RDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAHKM-QMPS----- 212

Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPV 249
           +  L  TG Q      +K+ELG    +A  STAS G+F ++L  EK  +  GK RKF P+
Sbjct: 213 SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPL 272

Query: 250 VEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKSSSMSSN 309
               G  + E++   ++L  + SK     L++ +A N    ++++++  +R K S     
Sbjct: 273 F---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATNKQMREEDQEEAAKRRKMS--QKG 332

Query: 310 KLKPNKKLQKKPLKKGSPKNGKAK 332
           K K  ++      K G P  G+ +
Sbjct: 333 KKKGGRQGPSGRRKGGPPSQGEKR 334

[Close]

BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match: XP_023531368.1 (ribosome biogenesis regulatory protein homolog [Cucurbita pepo subsp. pepo] >XP_023531369.1 ribosome biogenesis regulatory protein homolog [Cucurbita pepo subsp. pepo] >XP_023531371.1 ribosome biogenesis regulatory protein homolog [Cucurbita pepo subsp. pepo] >XP_023531372.1 ribosome biogenesis regulatory protein homolog [Cucurbita pepo subsp. pepo] >XP_023531373.1 ribosome biogenesis regulatory protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 631 bits (1627), Expect = 1.54e-227
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0


Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST
Sbjct: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR
Sbjct: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK
Sbjct: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK
Sbjct: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 331
           SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK
Sbjct: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 331

[Close]

BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match: XP_022933585.1 (ribosome biogenesis regulatory protein homolog [Cucurbita moschata] >XP_022933586.1 ribosome biogenesis regulatory protein homolog [Cucurbita moschata] >XP_022933587.1 ribosome biogenesis regulatory protein homolog [Cucurbita moschata] >KAG6588164.1 Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 620 bits (1598), Expect = 4.04e-223
Identity = 325/331 (98.19%), Postives = 328/331 (99.09%), Query Frame = 0


Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQQPFQIDLGNLMAFNPHHQ+PSLSSSREDLVSECLQKGAELAQFIANDLFNLPST
Sbjct: 1   MEMENQQPFQIDLGNLMAFNPHHQYPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR
Sbjct: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKK+RVEKQERNQLQNLK+AAKVGAL
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK
Sbjct: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMY VKKEKKQRNQRGK
Sbjct: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 331
           SSSMSSNKLKPNKKLQKKPLKKGS KNGKAK
Sbjct: 301 SSSMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match: XP_022967754.1 (ribosome biogenesis regulatory protein homolog [Cucurbita maxima] >XP_022967763.1 ribosome biogenesis regulatory protein homolog [Cucurbita maxima] >XP_022967772.1 ribosome biogenesis regulatory protein homolog [Cucurbita maxima] >XP_022967782.1 ribosome biogenesis regulatory protein homolog [Cucurbita maxima])

HSP 1 Score: 619 bits (1597), Expect = 5.74e-223
Identity = 325/331 (98.19%), Postives = 328/331 (99.09%), Query Frame = 0


Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQQPFQIDLGNLMAFNPHH+FPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST
Sbjct: 1   MEMENQQPFQIDLGNLMAFNPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR
Sbjct: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKK+RVEKQERNQLQNLK+AAKVGAL
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK
Sbjct: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMY VKKEKKQRNQRGK
Sbjct: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 331
           SSSMSSNKLKPNKKLQKKPLKKGS KNGKAK
Sbjct: 301 SSSMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match: XP_038878495.1 (ribosome biogenesis regulatory protein homolog [Benincasa hispida])

HSP 1 Score: 573 bits (1477), Expect = 1.07e-204
Identity = 298/331 (90.03%), Postives = 316/331 (95.47%), Query Frame = 0


Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQ PFQ+DLGNLMAFNPHH FPSL SSRE+LV+ECLQKG EL QFIANDLFNLPST
Sbjct: 1   MEIENQHPFQVDLGNLMAFNPHHHFPSLPSSREELVNECLQKGTELVQFIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLV+LPPP+TRLPREKPLPKPKPPTKWELFA+K+GIK RKKDK VYD+Q G+WKR
Sbjct: 61  EDRDGPLVKLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKKRKKDKRVYDEQAGTWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDEENIPIIEAKMTDEPG DPFAARRA+KK RVEKQE+N+LQNLK+AAKVGAL
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDEPGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSH+QLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKL GEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLTGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGSQE+EQTEKVLNRLISKNSHEILN++KAVNMY VKKEKKQRNQRGK
Sbjct: 241 YRKFLPVVEGTGIGSQEKEQTEKVLNRLISKNSHEILNVSKAVNMYNVKKEKKQRNQRGK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 331
           SSSMSS KLKPNKKLQKKPLKKGS K+GKAK
Sbjct: 301 SSSMSS-KLKPNKKLQKKPLKKGSSKHGKAK 330

[Close]

BLAST of Cp4.1LG04g11800 vs. NCBI nr
Match: XP_004149022.1 (ribosome biogenesis regulatory protein homolog [Cucumis sativus] >KGN66432.1 hypothetical protein Csa_007676 [Cucumis sativus])

HSP 1 Score: 564 bits (1454), Expect = 3.28e-201
Identity = 299/331 (90.33%), Postives = 314/331 (94.86%), Query Frame = 0


Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQ PFQIDLG+LMAFNPHHQFPSL SSREDLVSECLQKG EL Q IANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLVRLPPP+TRLPREKPLPKPKPPTKWELFA+K+GIKNRKKDK VYD+QT +WKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDE+NIPIIEAKMTDE G DPFAARRA+KK RVEKQE+N+LQNLK+AAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSH+QLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKK AGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGS+EREQTEKVL+RLISKNSHEILN+NKAVNMY VKKEKKQRNQ GK
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQ-GK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 331
           SSSMSS KLKPNKKLQKKPLKKGS K GKAK
Sbjct: 301 SSSMSS-KLKPNKKLQKKPLKKGSSKQGKAK 329

[Close]

BLAST of Cp4.1LG04g11800 vs. ExPASy TrEMBL
Match: A0A6J1F066 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111440969 PE=3 SV=1)

HSP 1 Score: 620 bits (1598), Expect = 1.96e-223
Identity = 325/331 (98.19%), Postives = 328/331 (99.09%), Query Frame = 0


Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQQPFQIDLGNLMAFNPHHQ+PSLSSSREDLVSECLQKGAELAQFIANDLFNLPST
Sbjct: 1   MEMENQQPFQIDLGNLMAFNPHHQYPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR
Sbjct: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKK+RVEKQERNQLQNLK+AAKVGAL
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK
Sbjct: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMY VKKEKKQRNQRGK
Sbjct: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 331
           SSSMSSNKLKPNKKLQKKPLKKGS KNGKAK
Sbjct: 301 SSSMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of Cp4.1LG04g11800 vs. ExPASy TrEMBL
Match: A0A6J1HW20 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111467179 PE=3 SV=1)

HSP 1 Score: 619 bits (1597), Expect = 2.78e-223
Identity = 325/331 (98.19%), Postives = 328/331 (99.09%), Query Frame = 0


Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQQPFQIDLGNLMAFNPHH+FPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST
Sbjct: 1   MEMENQQPFQIDLGNLMAFNPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR
Sbjct: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKK+RVEKQERNQLQNLK+AAKVGAL
Sbjct: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK
Sbjct: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMY VKKEKKQRNQRGK
Sbjct: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 331
           SSSMSSNKLKPNKKLQKKPLKKGS KNGKAK
Sbjct: 301 SSSMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of Cp4.1LG04g11800 vs. ExPASy TrEMBL
Match: A0A0A0LZY0 (Ribosome biogenesis regulatory protein OS=Cucumis sativus OX=3659 GN=Csa_1G605610 PE=3 SV=1)

HSP 1 Score: 564 bits (1454), Expect = 1.59e-201
Identity = 299/331 (90.33%), Postives = 314/331 (94.86%), Query Frame = 0


Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQ PFQIDLG+LMAFNPHHQFPSL SSREDLVSECLQKG EL Q IANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLVRLPPP+TRLPREKPLPKPKPPTKWELFA+K+GIKNRKKDK VYD+QT +WKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDE+NIPIIEAKMTDE G DPFAARRA+KK RVEKQE+N+LQNLK+AAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSH+QLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKK AGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGS+EREQTEKVL+RLISKNSHEILN+NKAVNMY VKKEKKQRNQ GK
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQ-GK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 331
           SSSMSS KLKPNKKLQKKPLKKGS K GKAK
Sbjct: 301 SSSMSS-KLKPNKKLQKKPLKKGSSKQGKAK 329

[Close]

BLAST of Cp4.1LG04g11800 vs. ExPASy TrEMBL
Match: A0A5A7TFQ4 (Ribosome biogenesis regulatory protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00350 PE=3 SV=1)

HSP 1 Score: 556 bits (1432), Expect = 3.70e-198
Identity = 292/331 (88.22%), Postives = 311/331 (93.96%), Query Frame = 0


Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQ PFQIDLG+LMAFNPHHQFPS+  SRE+L+SECLQKG EL Q IANDLFNLPST
Sbjct: 1   MEIENQHPFQIDLGHLMAFNPHHQFPSIPPSREELISECLQKGTELVQSIANDLFNLPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLVRLPPP+TRLPREKPLPKPKPPTKWELFA K+GIK RKKDK VYD+QT +WKR
Sbjct: 61  EDRDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFALKKGIKKRKKDKRVYDEQTHTWKR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDE+NIPIIEAKMTDE G DPFAARRA+KK RVEKQE+N+LQNLK+AAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSH+QLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKK AGEKPAKHQGK
Sbjct: 181 PSHIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGS+EREQTEKVL+RLISKNSHEILN+NKAVNMY VKKEKKQRNQ+GK
Sbjct: 241 YRKFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQQGK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPKNGKAK 331
           SSS SS+KLK NKKLQKKPLKKGS K GKAK
Sbjct: 301 SSS-SSSKLKANKKLQKKPLKKGSSKQGKAK 330

[Close]

BLAST of Cp4.1LG04g11800 vs. ExPASy TrEMBL
Match: A0A6J1DJD9 (Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC111021449 PE=3 SV=1)

HSP 1 Score: 552 bits (1423), Expect = 7.51e-197
Identity = 287/326 (88.04%), Postives = 307/326 (94.17%), Query Frame = 0


Query: 1   METENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPST 60
           ME ENQ PFQIDLGNL AFNPHHQFPS  SSREDLV+ECLQKG EL QFIAN+LFN PST
Sbjct: 1   MEAENQYPFQIDLGNLTAFNPHHQFPSSLSSREDLVNECLQKGIELVQFIANELFNRPST 60

Query: 61  EDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKR 120
           EDRDGPLV+LPPP+T+LPREK LPKPKPPTKWELFAKKRGIKNRK+DKI YD+QTG+W+R
Sbjct: 61  EDRDGPLVKLPPPTTKLPREKHLPKPKPPTKWELFAKKRGIKNRKRDKIAYDEQTGTWRR 120

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGAL 180
           RHGYDRANDE+NIPIIEAKMTDEPG DPFA RRANKK+RVEKQE+N+L+NLK+AAKVGAL
Sbjct: 121 RHGYDRANDEDNIPIIEAKMTDEPGEDPFATRRANKKNRVEKQEKNRLENLKQAAKVGAL 180

Query: 181 PSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGK 240
           PSHVQLAAT LPITGTQAAPKKITKD+LGN AGMAATSTASGGKFDKKLAGEKPAKHQGK
Sbjct: 181 PSHVQLAATTLPITGTQAAPKKITKDDLGNAAGMAATSTASGGKFDKKLAGEKPAKHQGK 240

Query: 241 YRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGK 300
           YRKFLPVVEGTGIGSQE+EQTEKVLNRLIS+NSHEILNINKAVNMY VK+EKKQ+ QRGK
Sbjct: 241 YRKFLPVVEGTGIGSQEKEQTEKVLNRLISRNSHEILNINKAVNMYNVKREKKQKGQRGK 300

Query: 301 SSSMSSNKLKPNKKLQKKPLKKGSPK 326
           SSSMSS KLKPNKKLQKK LKKGS K
Sbjct: 301 SSSMSS-KLKPNKKLQKKSLKKGSSK 325

[Close]

BLAST of Cp4.1LG04g11800 vs. TAIR 10
Match: AT2G37990.1 (ribosome biogenesis regulatory protein (RRS1) family protein )

HSP 1 Score: 400.6 bits (1028), Expect = 1.2e-111
Identity = 209/321 (65.11%), Postives = 257/321 (80.06%), Query Frame = 0


Query: 2   ETENQQPFQIDLGNLMAFNPHHQFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTE 61
           E E +Q +Q+D+GNL+AFNP+H+FPS  SSR +LV E L +G +L Q IAN LFN PSTE
Sbjct: 4   EMETEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTE 63

Query: 62  DRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRR 121
             DGP+V+LPPP+T+LPREK +P+PKPPTKWE FA K+GI+ RKK+K+V+D+QT  +KRR
Sbjct: 64  TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123

Query: 122 HGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKSRVEKQERNQLQNLKKAAKVGALP 181
           HGYDR ND+ ++PIIEAK +DEPGVDPFA R  +KK RV KQE+N+LQNLK A K GALP
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALP 183

Query: 182 SHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKY 241
           SHVQLAAT+LPI+GT+A PKKI KDELG+VAG+AATSTASGGKFDKKL GEKP K QGK+
Sbjct: 184 SHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKH 243

Query: 242 RKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYTVKKEKKQRNQRGKS 301
            K+LPVV G G  + E+EQT  VL+++ SK+SHEILN+ KA+NMY VKKEKK+       
Sbjct: 244 HKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK------- 303

Query: 302 SSMSSNKLKPNKKLQKKPLKK 323
            S  S+KLKP K + KKP  K
Sbjct: 304 -SGRSDKLKPKKDITKKPANK 316

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g11800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SH88	1.7e-110	65.11	Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 G...	[more]
Q2KIH4	2.5e-32	35.51	Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=...	[more]
Q9CYH6	2.5e-32	34.88	Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 ...	[more]
Q15050	3.2e-32	35.09	Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 P...	[more]
A1A5P2	1.2e-31	34.88	Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=...	[more]

BLAST of Cp4.1LG04g11800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531368.1	1.54e-227	100.00	ribosome biogenesis regulatory protein homolog [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_022933585.1	4.04e-223	98.19	ribosome biogenesis regulatory protein homolog [Cucurbita moschata] >XP_02293358...	[more]
XP_022967754.1	5.74e-223	98.19	ribosome biogenesis regulatory protein homolog [Cucurbita maxima] >XP_022967763....	[more]
XP_038878495.1	1.07e-204	90.03	ribosome biogenesis regulatory protein homolog [Benincasa hispida]	[more]
XP_004149022.1	3.28e-201	90.33	ribosome biogenesis regulatory protein homolog [Cucumis sativus] >KGN66432.1 hyp...	[more]

BLAST of Cp4.1LG04g11800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F066	1.96e-223	98.19	Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1HW20	2.78e-223	98.19	Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114671...	[more]
A0A0A0LZY0	1.59e-201	90.33	Ribosome biogenesis regulatory protein OS=Cucumis sativus OX=3659 GN=Csa_1G60561...	[more]
A0A5A7TFQ4	3.70e-198	88.22	Ribosome biogenesis regulatory protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1DJD9	7.51e-197	88.04	Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Cp4.1LG04g11800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37990.1	1.2e-111	65.11	ribosome biogenesis regulatory protein (RRS1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 151..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..331
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..331
None	No IPR available	PANTHER	PTHR17602:SF5	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 1..320
IPR007023	Ribosomal biogenesis regulatory protein	PFAM	PF04939	RRS1	coord: 8..171 e-value: 6.8E-54 score: 182.1
IPR007023	Ribosomal biogenesis regulatory protein	PANTHER	PTHR17602	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 1..320

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g11800.1	Cp4.1LG04g11800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0000055	ribosomal large subunit export from nucleus
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0005634	nucleus