Cp4.1LG04g11690 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g11690
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description60S ribosomal protein L30
LocationCp4.1LG04: 8692063 .. 8693990 (-)
RNA-Seq ExpressionCp4.1LG04g11690
SyntenyCp4.1LG04g11690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAGTTGAGAAGGAATAATAGCATTTAATAAAAAAGAAAAAGGAAAAACAGTTGGGCGCTCTATATATATTCTTAGATTAGGGTTTCTGGTTGTAACCCTTTCGGCGTCGATCGGCAGCTTTCTCTACTTCCACCATGGTGGCCGCGAAGAAGACCGTGAGTTTCTCTTCCCTTTCCCGCCCATTTCTTCCTCTTTGGCTTATTGCTGGGACTGGTTTCTATGTTTCGCATTTGATTTTGATTAGGAACGAAGAAATAGCCGGCGGATTTAGGTTTTTCTCCTCCGTCGTTTTTGTTTTGGAGAGGTCTGACATTTTGTGTTGTGAAAATTTCACAGAAGAAGACTCATGAGAGTATCAACAACAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTTCTCAAGACCTTGAGGAGCTCTAAAGGTAATCTGCTCACTAAGATTTCATATTTGCGTTACTGATCTGATCTCTCGACTTTGCCTCAGTGTATGTTTGTTCGTTGTTAATCCAGTTCAGTAGGTGTTTTTTATTTTTTTTTTCACGGTTGACATTCGGTTGATTTTCAGCTGTCCAGTTATTATAGTTAGGCATAGTTTTCAATGAAATTACTGAAACTTTCGAATCAAAGGTTGTTACCTACAGCATTAAAAGCATTGACAGGATTTTTTTTTTGTTTTTTTTTTTTTATTGTCATTGGCCTAATCCTTCATCCAATAGTTTATTTGAGTTACTAAAGTTGGTATCCCCTTGATTGACATTACTACGTTCACGTATTATTCTTTGAGAAGTTAAGGGATTCGTAGTGTCGTATTTGTTATCCATCTTTTGGTAAAGCCTTTTTCATGCGAGGTTATATATTATGTTCTTTTTGTTTGCAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAGTATTATGCGATGTTGGCCAAGGTTGGAGTTCACCATTACAACGGAAGTATGTTCCTAGCCCTTTTAATTAAGAATCAGCTTGATTTTCGGCACTGCATTTTAGTTTATCGTATTATCAGTTTACGAGAATGTATTGCCTACTCATGTGTTGTTGGCTAATTATGGGTTGTGAACTTCGTAAAATTGAGGTAGAATTGTTAGATTTCTGAATGAACTTACCCGTGACTTAAGCACTTGTCTCCACACATCCCGACTATGTCCAAGCTTTTTGATTGCTTATCCTTATTATTGGTTTATCTCTTATTCTGCATAAGAAGTTTGATTAGGAGATGCAATTGATTTTCCAGAAGACTCATTGTGAGCAAATATCTCTCTTGAATGTTGTCAGGCAATGTAGATCTTGGAACTGCGTGTGGAAAGTACTACAGAGTATGCTGCCTCAGTATTATCGATCCTGGTATACAGTTTTCTCTGATCAAAACTAAAATTTTGGGTGACTTCCTTGCTTAATGGTTCTGATCTTGAGTTTGGAATTATTTTCAGGCGACTCTGATATCATCAAGAGCATTCCCGGAGACAGTTAGTTTGCAACTTCCTCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTCAATCCATTTAATTTTGGGGTGAACGTAGTGATGTGTTCCGCTTGCGAAGCATGTTATTATCGATCGAATGGTTTCAATATAAACTTTTTATGTATGCCAGATCTTATTCCAGAATACTTGTTATATTATCTTGATGTTCCACACTACCCTTAACTGATTTCAAACAGCATGTTGTTGTCCATTCATTGATTTTATTATGATTTGCATTAACATTGGCATAGTTTAAGGGAGGTTAGGCATTAATGTTGTCGCTTCGAATCTTGTAGTAGTCTTTCATATTTCCGTTAACCGATTCCAAACTAGCATGTATTGATCACATATTGATTTTATAGTATGCCA

mRNA sequence

CAAAGTTGAGAAGGAATAATAGCATTTAATAAAAAAGAAAAAGGAAAAACAGTTGGGCGCTCTATATATATTCTTAGATTAGGGTTTCTGGTTGTAACCCTTTCGGCGTCGATCGGCAGCTTTCTCTACTTCCACCATGGTGGCCGCGAAGAAGACCAAGAAGACTCATGAGAGTATCAACAACAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTTCTCAAGACCTTGAGGAGCTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAGTATTATGCGATGTTGGCCAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTAGATCTTGGAACTGCGTGTGGAAAGTACTACAGAGTATGCTGCCTCAGTATTATCGATCCTGGCGACTCTGATATCATCAAGAGCATTCCCGGAGACAGTTAGTTTGCAACTTCCTCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTCAATCCATTTAATTTTGGGGTGAACGTAGTGATGTGTTCCGCTTGCGAAGCATGTTATTATCGATCGAATGGTTTCAATATAAACTTTTTATGTATGCCAGATCTTATTCCAGAATACTTGTTATATTATCTTGATGTTCCACACTACCCTTAACTGATTTCAAACAGCATGTTGTTGTCCATTCATTGATTTTATTATGATTTGCATTAACATTGGCATAGTTTAAGGGAGGTTAGGCATTAATGTTGTCGCTTCGAATCTTGTAGTAGTCTTTCATATTTCCGTTAACCGATTCCAAACTAGCATGTATTGATCACATATTGATTTTATAGTATGCCA

Coding sequence (CDS)

ATGGTGGCCGCGAAGAAGACCAAGAAGACTCATGAGAGTATCAACAACAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTTCTCAAGACCTTGAGGAGCTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAGTATTATGCGATGTTGGCCAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTAGATCTTGGAACTGCGTGTGGAAAGTACTACAGAGTATGCTGCCTCAGTATTATCGATCCTGGCGACTCTGATATCATCAAGAGCATTCCCGGAGACAGTTAG

Protein sequence

MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS
Homology
[Close]
BLAST of Cp4.1LG04g11690 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 4.9e-57
Identity = 106/111 (95.50%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LRSSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPGDSDIIK++PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGD 111

[Close]
BLAST of Cp4.1LG04g11690 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-54
Identity = 103/111 (92.79%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LRS+KGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID GDSDIIKSIPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGD 111

[Close]
BLAST of Cp4.1LG04g11690 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-51
Identity = 96/111 (86.49%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 112
           EYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIKS+PGD
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111

[Close]
BLAST of Cp4.1LG04g11690 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 6.8e-51
Identity = 95/111 (85.59%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIKSIPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111

[Close]
BLAST of Cp4.1LG04g11690 vs. ExPASy Swiss-Prot
Match: Q9LSA3 (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.5e-50
Identity = 93/111 (83.78%), Postives = 106/111 (95.50%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 112
           EYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK++PGD
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111

[Close]
BLAST of Cp4.1LG04g11690 vs. NCBI nr
Match: XP_022925483.1 (60S ribosomal protein L30 [Cucurbita moschata] >XP_022968625.1 60S ribosomal protein L30 [Cucurbita maxima] >XP_023529418.1 60S ribosomal protein L30 [Cucurbita pepo subsp. pepo] >KAG6588153.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022046.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228 bits (580), Expect = 3.59e-75
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112

[Close]
BLAST of Cp4.1LG04g11690 vs. NCBI nr
Match: XP_022960585.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023515547.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >KAG7022349.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224 bits (571), Expect = 8.48e-74
Identity = 109/112 (97.32%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PG+S
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 112

[Close]
BLAST of Cp4.1LG04g11690 vs. NCBI nr
Match: XP_006340286.1 (PREDICTED: 60S ribosomal protein L30 [Solanum tuberosum])

HSP 1 Score: 224 bits (570), Expect = 1.21e-73
Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 111
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 111

[Close]
BLAST of Cp4.1LG04g11690 vs. NCBI nr
Match: XP_038878626.1 (60S ribosomal protein L30 [Benincasa hispida])

HSP 1 Score: 224 bits (570), Expect = 1.21e-73
Identity = 109/112 (97.32%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PG+S
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES 112

[Close]
BLAST of Cp4.1LG04g11690 vs. NCBI nr
Match: ABU75308.1 (ribosomal protein L30e [Pisum sativum])

HSP 1 Score: 223 bits (568), Expect = 2.43e-73
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LRSSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 111
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPGDSDIIKSIPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKSIPGD 111

[Close]
BLAST of Cp4.1LG04g11690 vs. ExPASy TrEMBL
Match: A0A6J1HXQ4 (60S ribosomal protein L30 OS=Cucurbita maxima OX=3661 GN=LOC111467784 PE=3 SV=1)

HSP 1 Score: 228 bits (580), Expect = 1.74e-75
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112

[Close]
BLAST of Cp4.1LG04g11690 vs. ExPASy TrEMBL
Match: A0A6J1EFB5 (60S ribosomal protein L30 OS=Cucurbita moschata OX=3662 GN=LOC111432770 PE=3 SV=1)

HSP 1 Score: 228 bits (580), Expect = 1.74e-75
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112

[Close]
BLAST of Cp4.1LG04g11690 vs. ExPASy TrEMBL
Match: A0A6J1JJ11 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 SV=1)

HSP 1 Score: 224 bits (571), Expect = 4.11e-74
Identity = 109/112 (97.32%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PG+S
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 112

[Close]
BLAST of Cp4.1LG04g11690 vs. ExPASy TrEMBL
Match: A0A6J1H9H7 (60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111461321 PE=3 SV=1)

HSP 1 Score: 224 bits (571), Expect = 4.11e-74
Identity = 109/112 (97.32%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PG+S
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 112

[Close]
BLAST of Cp4.1LG04g11690 vs. ExPASy TrEMBL
Match: A0A0V0GYL7 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 224 bits (570), Expect = 5.83e-74
Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 111
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 111

[Close]
BLAST of Cp4.1LG04g11690 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-52
Identity = 96/111 (86.49%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 112
           EYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIKS+PGD
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111

[Close]
BLAST of Cp4.1LG04g11690 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.1 bits (510), Expect = 4.8e-52
Identity = 95/111 (85.59%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIKSIPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111

[Close]
BLAST of Cp4.1LG04g11690 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 197.6 bits (501), Expect = 5.4e-51
Identity = 93/111 (83.78%), Postives = 106/111 (95.50%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60
           MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGD 112
           EYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK++PGD
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g11690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O498844.9e-5795.5060S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1[more]
Q9M5M61.7e-5492.7960S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1[more]
Q9C8F72.3e-5186.49Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P... [more]
Q8VZ196.8e-5185.5960S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1[more]
Q9LSA37.5e-5083.7860S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1[more]
BLAST of Cp4.1LG04g11690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022925483.13.59e-75100.0060S ribosomal protein L30 [Cucurbita moschata] >XP_022968625.1 60S ribosomal pro... [more]
XP_022960585.18.48e-7497.3260S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosoma... [more]
XP_006340286.11.21e-7398.20PREDICTED: 60S ribosomal protein L30 [Solanum tuberosum][more]
XP_038878626.11.21e-7397.3260S ribosomal protein L30 [Benincasa hispida][more]
ABU75308.12.43e-7397.30ribosomal protein L30e [Pisum sativum][more]
BLAST of Cp4.1LG04g11690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HXQ41.74e-75100.0060S ribosomal protein L30 OS=Cucurbita maxima OX=3661 GN=LOC111467784 PE=3 SV=1[more]
A0A6J1EFB51.74e-75100.0060S ribosomal protein L30 OS=Cucurbita moschata OX=3662 GN=LOC111432770 PE=3 SV=... [more]
A0A6J1JJ114.11e-7497.3260S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 ... [more]
A0A6J1H9H74.11e-7497.3260S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111461321 PE=... [more]
A0A0V0GYL75.83e-7498.20Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1[more]
BLAST of Cp4.1LG04g11690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G36240.11.7e-5286.49Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G77940.14.8e-5285.59Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT3G18740.15.4e-5183.78Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 2..108
e-value: 5.0E-54
score: 182.5
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 13..106
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 13..105
e-value: 3.4E-24
score: 84.4
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 1..112
NoneNo IPR availablePANTHERPTHR11449:SF2360S RIBOSOMAL PROTEIN L30coord: 1..112
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 80..100
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00709RIBOSOMAL_L30E_1coord: 24..48
IPR000231Ribosomal protein L30eHAMAPMF_00481Ribosomal_L30ecoord: 12..109
score: 21.4942

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g11690.1Cp4.1LG04g11690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome