Cp4.1LG04g11230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g11230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cp4.1LG04: 9034391 .. 9036485 (+)
RNA-Seq Expression	Cp4.1LG04g11230
Synteny	Cp4.1LG04g11230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAACTTCAATGGCCATTCATCATAAACACATCAAAGCTGTTCACCAATCTGGTTTTATATCACTGAAGCTCTCCGGCCATGGCCCTCTCTATTTCTTCCGCTGCGCTCTCAACAATCCCAATCAGGTAAACCCAAAATCCCATTTCTTTCATTAATTTCTCCAAATTTTCGGTCTCAAATTTCTGTTTCTCAGCAGAGAATCATCCCACACCCACCACAGAGCACTTAATTTCCCCGGAAAATTCCCAAAATACAATCTCCGGCGAGGTTCTACTCATCTGAAAGCTGCAAAATCCGGCGTATCTAGCGTCTGTGAACCGCTCCCTCCAGATCGACCCCTCTGGTTCCCCGGCAGCACCCCCCCTGAGTGGCTCGACGGCAGGTTAATCCCAACTTCCTCACCCCTAATTCGTTCTATCTTGATGAATGTTTAAGCTCTTTCTCGCTTTGCAGTCTTCCCGGCGATTTCGGCTTCGACCCACTTGGATTGGGTACGCCCTTCTCTCGTTCTTTGATTCATTTTAAATTTCTTTGTTGCTGGTCGAAAATTTCATACTCTGTGATGGTCAGGATCCGACCCAGAGCTCCTAAAATGGTTCGCACAAGCGGAGCTAATGCACGCGAGATGGGCAATGCTCGCAGTGGCCGGAATCCTCCTCCCCGAATGGTTCGAAAGCTTAGGACTGATTCAAAATTTCTCCTGGTACGACGCCGGAACGCGAGAATACTTTGCAGACCCGATGACATTGCTGGTGGCTCAATTGGGTCTAATGGGGTGGGTTGAGGGGCGGCGGTGGGCGGACATGGTTAACCCAGGAAGCGTCGACGTGGACCTCAAACTACCTCACAAGAAAAGGCCAACACCGGACGTGGGCTACCCCGGCGGGTTCTGGTTCGACCCGATGATGTGGGGCAGGGGATCGCCGGAGCCGGTCATGGTGCTGCGGACTAAGGAGATCAAGAACGGGCGGCTGGCGATGCTGGCGTTTGTCGGACTGTGGTTTCAGGCTATTTATACAGGGCAAGGTCCGCTGGAGAATCTCGCCGCCCACGTTGCCGATCCCGGCCACTGCAACATCTTCTCGGTAACGACCGTTCCTGTCATGAACCTTGGGTTTTAGCTATGGCTAACGGTAATTGTTGTTCTTACAGGCATTCAGCTCCGGTGGAATTTGAGCTCAGATTCAGACATTGGTTACATCCAACATCCGACACAAGTTTGTAATTGTCACTATTTCAAAATATTTGGATATCTATAAAGTCTTCATTGATTATGTTACATATATTTACGGATTTAATTTATGTCATTTCGATTACGTTATAATAACATGATTATGGAACGTGTTAACGAGTAGAAGGCGTCATGGTATACATTTAATTGTTGTTATTACTGACCATTTGTGGGAGAAGACTAGAGCTACTGGTTCAAAAGTTGTCGTTCGAGAAGGGAGATGAAGAATGTGACGACCCATATACACTGCTAGCAGATATTGTCGTTTTTGGGCTCTCACTTTTGGGCTTTCCTTTAAAGCTTTAAAACGCGTTTGCTAGGGGAAGGTTTCCACGTCCTCCTAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTGGACATCAAAAAGAAGGTGAGAAAGCTCGAGTAAGGAAACGACAAAGAAAACTGCACAATGATTGTAACAGTCGAAGCCTATCGTGAGCAGATATTGTCCGCTTTGATCTATTACGTTTAAAACGCGTCTACTAAAGAGAGGTTTCCACGCCCTTATAAGAAATGCTTCTTTCTCCTCCACACCGCCCGGAGTCTGGCTCTGATACTATTTGTAATAGTTCAGACTCATCGCTAGCTAGATGCATTGTAAAATCGTGAGGCTGACGACGATACGTAACGAGTCAAAGCAGAGAGTGTCGGCTAGCGATGGACGTTAGTTTCGTTCTTCAACTTTAACCGCGAACATTTTCTCTTTAATCATCATTTTCTCGTTCAAGCCGTCGATTACAATAGTTTCGTTCTTCAGCTTTAACCGTCAAAAGAATTCTTTAACAAAAGAAACTTCCTTCGAGATTGTGTGAAGGAGACAATCGCTAGCGTCACATGT

mRNA sequence

ACAAACTTCAATGGCCATTCATCATAAACACATCAAAGCTGTTCACCAATCTGGTTTTATATCACTGAAGCTCTCCGGCCATGGCCCTCTCTATTTCTTCCGCTGCGCTCTCAACAATCCCAATCAGAGAATCATCCCACACCCACCACAGAGCACTTAATTTCCCCGGAAAATTCCCAAAATACAATCTCCGGCGAGGTTCTACTCATCTGAAAGCTGCAAAATCCGGCGTATCTAGCGTCTGTGAACCGCTCCCTCCAGATCGACCCCTCTGGTTCCCCGGCAGCACCCCCCCTGAGTGGCTCGACGGCAGTCTTCCCGGCGATTTCGGCTTCGACCCACTTGGATTGGGATCCGACCCAGAGCTCCTAAAATGGTTCGCACAAGCGGAGCTAATGCACGCGAGATGGGCAATGCTCGCAGTGGCCGGAATCCTCCTCCCCGAATGGTTCGAAAGCTTAGGACTGATTCAAAATTTCTCCTGGTACGACGCCGGAACGCGAGAATACTTTGCAGACCCGATGACATTGCTGGTGGCTCAATTGGGTCTAATGGGGTGGGTTGAGGGGCGGCGGTGGGCGGACATGGTTAACCCAGGAAGCGTCGACGTGGACCTCAAACTACCTCACAAGAAAAGGCCAACACCGGACGTGGGCTACCCCGGCGGGTTCTGGTTCGACCCGATGATGTGGGGCAGGGGATCGCCGGAGCCGGTCATGGTGCTGCGGACTAAGGAGATCAAGAACGGGCGGCTGGCGATGCTGGCGTTTGTCGGACTGTGGTTTCAGGCTATTTATACAGGGCAAGGTCCGCTGGAGAATCTCGCCGCCCACGTTGCCGATCCCGGCCACTGCAACATCTTCTCGGCATTCAGCTCCGGTGGAATTTGAGCTCAGATTCAGACATTGGTTACATCCAACATCCGACACAAGTTTGTAATTGTCACTATTTCAAAATATTTGGATATCTATAAAGTCTTCATTGATTATGTTACATATATTTACGGATTTAATTTATGTCATTTCGATTACGTTATAATAACATGATTATGGAACGTGTTAACGAGTAGAAGGCGTCATGGTATACATTTAATTGTTGTTATTACTGACCATTTGTGGGAGAAGACTAGAGCTACTGGTTCAAAAGTTGTCGTTCGAGAAGGGAGATGAAGAATGTGACGACCCATATACACTGCTAGCAGATATTGTCGTTTTTGGGCTCTCACTTTTGGGCTTTCCTTTAAAGCTTTAAAACGCGTTTGCTAGGGGAAGGTTTCCACGTCCTCCTAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTGGACATCAAAAAGAAGGTGAGAAAGCTCGAGTAAGGAAACGACAAAGAAAACTGCACAATGATTGTAACAGTCGAAGCCTATCGTGAGCAGATATTGTCCGCTTTGATCTATTACGTTTAAAACGCGTCTACTAAAGAGAGGTTTCCACGCCCTTATAAGAAATGCTTCTTTCTCCTCCACACCGCCCGGAGTCTGGCTCTGATACTATTTGTAATAGTTCAGACTCATCGCTAGCTAGATGCATTGTAAAATCGTGAGGCTGACGACGATACGTAACGAGTCAAAGCAGAGAGTGTCGGCTAGCGATGGACGTTAGTTTCGTTCTTCAACTTTAACCGCGAACATTTTCTCTTTAATCATCATTTTCTCGTTCAAGCCGTCGATTACAATAGTTTCGTTCTTCAGCTTTAACCGTCAAAAGAATTCTTTAACAAAAGAAACTTCCTTCGAGATTGTGTGAAGGAGACAATCGCTAGCGTCACATGT

Coding sequence (CDS)

ATGGCCCTCTCTATTTCTTCCGCTGCGCTCTCAACAATCCCAATCAGAGAATCATCCCACACCCACCACAGAGCACTTAATTTCCCCGGAAAATTCCCAAAATACAATCTCCGGCGAGGTTCTACTCATCTGAAAGCTGCAAAATCCGGCGTATCTAGCGTCTGTGAACCGCTCCCTCCAGATCGACCCCTCTGGTTCCCCGGCAGCACCCCCCCTGAGTGGCTCGACGGCAGTCTTCCCGGCGATTTCGGCTTCGACCCACTTGGATTGGGATCCGACCCAGAGCTCCTAAAATGGTTCGCACAAGCGGAGCTAATGCACGCGAGATGGGCAATGCTCGCAGTGGCCGGAATCCTCCTCCCCGAATGGTTCGAAAGCTTAGGACTGATTCAAAATTTCTCCTGGTACGACGCCGGAACGCGAGAATACTTTGCAGACCCGATGACATTGCTGGTGGCTCAATTGGGTCTAATGGGGTGGGTTGAGGGGCGGCGGTGGGCGGACATGGTTAACCCAGGAAGCGTCGACGTGGACCTCAAACTACCTCACAAGAAAAGGCCAACACCGGACGTGGGCTACCCCGGCGGGTTCTGGTTCGACCCGATGATGTGGGGCAGGGGATCGCCGGAGCCGGTCATGGTGCTGCGGACTAAGGAGATCAAGAACGGGCGGCTGGCGATGCTGGCGTTTGTCGGACTGTGGTTTCAGGCTATTTATACAGGGCAAGGTCCGCTGGAGAATCTCGCCGCCCACGTTGCCGATCCCGGCCACTGCAACATCTTCTCGGCATTCAGCTCCGGTGGAATTTGA

Protein sequence

MALSISSAALSTIPIRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLKLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGGI

Homology

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BLAST of Cp4.1LG04g11230 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 4.5e-109
Identity = 186/269 (69.14%), Postives = 210/269 (78.07%), Query Frame = 0


Query: 1   MALSISSAALSTIPI---RESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEP 60
           MA +I+SA  ST+ +   R  + T  R            L R    +  A   VSSVCEP
Sbjct: 1   MAFAIASALTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEP 60

Query: 61  LPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAG 120
           LPPDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDP+ LKWFAQAEL+H+RWAMLAV G
Sbjct: 61  LPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120

Query: 121 ILLPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDV 180
           I++PE  E LG I+NFSWYDAG+REYFAD  TL VAQ+ LMGW EGRRWAD++ PGSVD+
Sbjct: 121 IIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDI 180

Query: 181 DLKLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQA 240
           + K PHK  P PDVGYPGG WFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAF+G  FQA
Sbjct: 181 EPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240

Query: 241 IYTGQGPLENLAAHVADPGHCNIFSAFSS 267
            YT Q P+ENL AH+ADPGHCN+FSAF+S
Sbjct: 241 TYTSQDPIENLMAHLADPGHCNVFSAFTS 269

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BLAST of Cp4.1LG04g11230 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 5.4e-86
Identity = 140/206 (67.96%), Postives = 161/206 (78.16%), Query Frame = 0


Query: 60  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 119
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE LKW AQAEL+H+RWAML  AGI 
Sbjct: 63  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIF 122

Query: 120 LPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 179
           +PE+   +G++   SWY AG +EYF D  TL V +L L+GW EGRRWAD++ PG V+ D 
Sbjct: 123 IPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDP 182

Query: 180 KLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 239
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 183 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIY 242

Query: 240 TGQGPLENLAAHVADPGHCNIFSAFS 266
           TG GP++NL AH+ADPGH  IF+AFS
Sbjct: 243 TGTGPIDNLFAHLADPGHATIFAAFS 268

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BLAST of Cp4.1LG04g11230 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.7e-84
Identity = 137/214 (64.02%), Postives = 160/214 (74.77%), Query Frame = 0


Query: 52  SSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWA 111
           ++VC    PDRPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE L+W  QAEL+H RWA
Sbjct: 55  TTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWA 114

Query: 112 MLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVN 171
           ML  AGI +PE    +G++   SWY AG +EYF D  TL + +L L+GW EGRRWAD++ 
Sbjct: 115 MLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIK 174

Query: 172 PGSVDVDLKLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFV 231
           PG V+ D   P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +
Sbjct: 175 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234

Query: 232 GLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 266
           G WFQ IYTG GP++NL AH+ADPGH  IF+AFS
Sbjct: 235 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

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BLAST of Cp4.1LG04g11230 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.7e-84
Identity = 139/232 (59.91%), Postives = 167/232 (71.98%), Query Frame = 0


Query: 34  KYNLRRGSTHLKAAKSGVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSD 93
           K  L++  T    ++   S       PDRP+WFPGSTPPEWLDGSLPGDFGFDPLGL SD
Sbjct: 24  KLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSD 83

Query: 94  PELLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPMTLLVA 153
           P+ LKW  QAE++H RWAML  AGI +PE+   +G++   SWY AG +EYF D  TL V 
Sbjct: 84  PDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVV 143

Query: 154 QLGLMGWVEGRRWADMVNPGSVDVDLKLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVM 213
           +L L+GW EGRRWAD++ PGSV+ D   P+ K    DVGYPGG WFDP+ WG GSP  + 
Sbjct: 144 ELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLK 203

Query: 214 VLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 266
            LRTKEIKNGRLAMLA +G WFQ IYTG GP++NL AH+ADPGH  IF+AF+
Sbjct: 204 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 255

[Close]

BLAST of Cp4.1LG04g11230 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-52
Identity = 103/201 (51.24%), Postives = 126/201 (62.69%), Query Frame = 0


Query: 65  WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWF 124
           W PG   P++L GSL GD GFDPLGL  DPE LKWF QAEL++ RWAML VAG+LLPE F
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 125 ESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLKLPHK 184
             +G+I    WYDAG  +YFA   TL V +  L  +VE RRW D+ NPGSV+ D      
Sbjct: 117 TKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 176

Query: 185 KRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 244
             P  +VGYPGG  F+P+ +      P    + KE+ NGRLAMLAF+G   Q   TG+GP
Sbjct: 177 SLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGP 236

Query: 245 LENLAAHVADPGHCNIFSAFS 266
            ENL  H++DP H  I   F+
Sbjct: 237 FENLLQHLSDPWHNTIVQTFN 251

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BLAST of Cp4.1LG04g11230 vs. NCBI nr
Match: XP_023529387.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 575 bits (1481), Expect = 2.24e-207
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MALSISSAALSTIPIRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLPP 60
           MALSISSAALSTIPIRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLPP
Sbjct: 1   MALSISSAALSTIPIRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLPP 60

Query: 61  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 120
           DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL
Sbjct: 61  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 120

Query: 121 PEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK 180
           PEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK
Sbjct: 121 PEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK 180

Query: 181 LPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240
           LPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT
Sbjct: 181 LPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240

Query: 241 GQGPLENLAAHVADPGHCNIFSAFSSGGI 269
           GQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 GQGPLENLAAHVADPGHCNIFSAFSSGGI 269

[Close]

BLAST of Cp4.1LG04g11230 vs. NCBI nr
Match: XP_023529386.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 570 bits (1469), Expect = 1.57e-205
Identity = 269/270 (99.63%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 1   MALSISSAALSTIPI-RESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLP 60
           MALSISSAALSTIPI RESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLP
Sbjct: 1   MALSISSAALSTIPISRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 269
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 270

[Close]

BLAST of Cp4.1LG04g11230 vs. NCBI nr
Match: XP_022929243.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 565 bits (1457), Expect = 1.02e-203
Identity = 263/269 (97.77%), Postives = 266/269 (98.88%), Query Frame = 0


Query: 1   MALSISSAALSTIPIRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLPP 60
           MALSISS ALST+PIRESSH+HHRALNFPGKFPKYNLRRGSTHL AAKSGVSSVCEPLPP
Sbjct: 1   MALSISSTALSTLPIRESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLPP 60

Query: 61  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 120
           DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL
Sbjct: 61  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 120

Query: 121 PEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK 180
           PEWFESLGLIQNFSWYDAGTREYFADP TLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK
Sbjct: 121 PEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK 180

Query: 181 LPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240
           LPHKK+PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT
Sbjct: 181 LPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240

Query: 241 GQGPLENLAAHVADPGHCNIFSAFSSGGI 269
           GQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 GQGPLENLAAHVADPGHCNIFSAFSSGGI 269

[Close]

BLAST of Cp4.1LG04g11230 vs. NCBI nr
Match: KAG6588096.1 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 562 bits (1449), Expect = 1.70e-202
Identity = 261/269 (97.03%), Postives = 265/269 (98.51%), Query Frame = 0


Query: 1   MALSISSAALSTIPIRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLPP 60
           MALSISS ALST+PIRESSH+HH+ALNFPGKFPKYNLRRGSTHL AAKSGVSSVCEPLPP
Sbjct: 1   MALSISSTALSTLPIRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLPP 60

Query: 61  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 120
           DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL
Sbjct: 61  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 120

Query: 121 PEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK 180
           PEWFESLGLI NFSWYDAGTREYFADP TLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK
Sbjct: 121 PEWFESLGLIHNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK 180

Query: 181 LPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240
           LPHKK+PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT
Sbjct: 181 LPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240

Query: 241 GQGPLENLAAHVADPGHCNIFSAFSSGGI 269
           GQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 GQGPLENLAAHVADPGHCNIFSAFSSGGI 269

[Close]

BLAST of Cp4.1LG04g11230 vs. NCBI nr
Match: XP_022929235.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 561 bits (1445), Expect = 7.17e-202
Identity = 263/270 (97.41%), Postives = 266/270 (98.52%), Query Frame = 0


Query: 1   MALSISSAALSTIPI-RESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLP 60
           MALSISS ALST+PI RESSH+HHRALNFPGKFPKYNLRRGSTHL AAKSGVSSVCEPLP
Sbjct: 1   MALSISSTALSTLPISRESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADP TLLVAQLGLMGWVEGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKK+PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 269
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 270

[Close]

BLAST of Cp4.1LG04g11230 vs. ExPASy TrEMBL
Match: A0A6J1ERI7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435884 PE=3 SV=1)

HSP 1 Score: 565 bits (1457), Expect = 4.95e-204
Identity = 263/269 (97.77%), Postives = 266/269 (98.88%), Query Frame = 0


Query: 1   MALSISSAALSTIPIRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLPP 60
           MALSISS ALST+PIRESSH+HHRALNFPGKFPKYNLRRGSTHL AAKSGVSSVCEPLPP
Sbjct: 1   MALSISSTALSTLPIRESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLPP 60

Query: 61  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 120
           DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL
Sbjct: 61  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 120

Query: 121 PEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK 180
           PEWFESLGLIQNFSWYDAGTREYFADP TLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK
Sbjct: 121 PEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK 180

Query: 181 LPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240
           LPHKK+PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT
Sbjct: 181 LPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240

Query: 241 GQGPLENLAAHVADPGHCNIFSAFSSGGI 269
           GQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 GQGPLENLAAHVADPGHCNIFSAFSSGGI 269

[Close]

BLAST of Cp4.1LG04g11230 vs. ExPASy TrEMBL
Match: A0A6J1ETS8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435884 PE=3 SV=1)

HSP 1 Score: 561 bits (1445), Expect = 3.47e-202
Identity = 263/270 (97.41%), Postives = 266/270 (98.52%), Query Frame = 0


Query: 1   MALSISSAALSTIPI-RESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLP 60
           MALSISS ALST+PI RESSH+HHRALNFPGKFPKYNLRRGSTHL AAKSGVSSVCEPLP
Sbjct: 1   MALSISSTALSTLPISRESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADP TLLVAQLGLMGWVEGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKK+PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 269
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 270

[Close]

BLAST of Cp4.1LG04g11230 vs. ExPASy TrEMBL
Match: A0A6J1HWP6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467340 PE=3 SV=1)

HSP 1 Score: 553 bits (1425), Expect = 6.54e-199
Identity = 259/269 (96.28%), Postives = 264/269 (98.14%), Query Frame = 0


Query: 1   MALSISSAALSTIPIRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLPP 60
           MALSISS ALS++PIRESSH+H RALNFPGKFPKYNLRRGS+HL AAKSGVSSVCEPLPP
Sbjct: 17  MALSISSTALSSLPIRESSHSH-RALNFPGKFPKYNLRRGSSHLNAAKSGVSSVCEPLPP 76

Query: 61  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 120
           DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL
Sbjct: 77  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 136

Query: 121 PEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK 180
           PEWFESLGLIQNFSWYDAGTREYFADP TLLVAQLGLMGWVEGRRWADMVNPG VDVDLK
Sbjct: 137 PEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGCVDVDLK 196

Query: 181 LPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240
           LPHKK+PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT
Sbjct: 197 LPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 256

Query: 241 GQGPLENLAAHVADPGHCNIFSAFSSGGI 269
           GQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 257 GQGPLENLAAHVADPGHCNIFSAFSSGGI 284

[Close]

BLAST of Cp4.1LG04g11230 vs. ExPASy TrEMBL
Match: A0A6J1HS79 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467340 PE=3 SV=1)

HSP 1 Score: 548 bits (1413), Expect = 4.58e-197
Identity = 259/270 (95.93%), Postives = 264/270 (97.78%), Query Frame = 0


Query: 1   MALSISSAALSTIPI-RESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLP 60
           MALSISS ALS++PI RESSH+H RALNFPGKFPKYNLRRGS+HL AAKSGVSSVCEPLP
Sbjct: 17  MALSISSTALSSLPISRESSHSH-RALNFPGKFPKYNLRRGSSHLNAAKSGVSSVCEPLP 76

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 77  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 136

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADP TLLVAQLGLMGWVEGRRWADMVNPG VDVDL
Sbjct: 137 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGCVDVDL 196

Query: 181 KLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKK+PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 197 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 256

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 269
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 257 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 285

[Close]

BLAST of Cp4.1LG04g11230 vs. ExPASy TrEMBL
Match: A0A6J1D327 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111016538 PE=3 SV=1)

HSP 1 Score: 507 bits (1306), Expect = 4.18e-181
Identity = 243/269 (90.33%), Postives = 251/269 (93.31%), Query Frame = 0


Query: 1   MALSISSAALS--TIPIRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPL 60
           MALSI+S ALS  T+PIRES HT H    FPGKF K+ LRR  +HL AAKSGVSSVCEPL
Sbjct: 1   MALSIASTALSVSTLPIRES-HTRH----FPGKFTKH-LRRDYSHLNAAKSGVSSVCEPL 60

Query: 61  PPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGI 120
           PPDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGI
Sbjct: 61  PPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGI 120

Query: 121 LLPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVD 180
           LLPEWFESLGLI+NFSWYDAGTREYFADP TLLVAQLGLMGW EGRRWADMVNPGSVDVD
Sbjct: 121 LLPEWFESLGLIENFSWYDAGTREYFADPTTLLVAQLGLMGWAEGRRWADMVNPGSVDVD 180

Query: 181 LKLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI 240
           LKLPHKK+P PDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI
Sbjct: 181 LKLPHKKKPAPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI 240

Query: 241 YTGQGPLENLAAHVADPGHCNIFSAFSSG 267
           YTGQGPLENLAAH+ADPGHCNIFSAF SG
Sbjct: 241 YTGQGPLENLAAHLADPGHCNIFSAFRSG 263

[Close]

BLAST of Cp4.1LG04g11230 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 395.6 bits (1015), Expect = 3.2e-110
Identity = 186/269 (69.14%), Postives = 210/269 (78.07%), Query Frame = 0


Query: 1   MALSISSAALSTIPI---RESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEP 60
           MA +I+SA  ST+ +   R  + T  R            L R    +  A   VSSVCEP
Sbjct: 1   MAFAIASALTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEP 60

Query: 61  LPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAG 120
           LPPDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDP+ LKWFAQAEL+H+RWAMLAV G
Sbjct: 61  LPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120

Query: 121 ILLPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDV 180
           I++PE  E LG I+NFSWYDAG+REYFAD  TL VAQ+ LMGW EGRRWAD++ PGSVD+
Sbjct: 121 IIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDI 180

Query: 181 DLKLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQA 240
           + K PHK  P PDVGYPGG WFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAF+G  FQA
Sbjct: 181 EPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240

Query: 241 IYTGQGPLENLAAHVADPGHCNIFSAFSS 267
            YT Q P+ENL AH+ADPGHCN+FSAF+S
Sbjct: 241 TYTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]

BLAST of Cp4.1LG04g11230 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 313.9 bits (803), Expect = 1.2e-85
Identity = 139/232 (59.91%), Postives = 167/232 (71.98%), Query Frame = 0


Query: 34  KYNLRRGSTHLKAAKSGVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSD 93
           K  L++  T    ++   S       PDRP+WFPGSTPPEWLDGSLPGDFGFDPLGL SD
Sbjct: 24  KLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSD 83

Query: 94  PELLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPMTLLVA 153
           P+ LKW  QAE++H RWAML  AGI +PE+   +G++   SWY AG +EYF D  TL V 
Sbjct: 84  PDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVV 143

Query: 154 QLGLMGWVEGRRWADMVNPGSVDVDLKLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVM 213
           +L L+GW EGRRWAD++ PGSV+ D   P+ K    DVGYPGG WFDP+ WG GSP  + 
Sbjct: 144 ELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLK 203

Query: 214 VLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 266
            LRTKEIKNGRLAMLA +G WFQ IYTG GP++NL AH+ADPGH  IF+AF+
Sbjct: 204 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 255

[Close]

BLAST of Cp4.1LG04g11230 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 208.0 bits (528), Expect = 9.5e-54
Identity = 103/201 (51.24%), Postives = 126/201 (62.69%), Query Frame = 0


Query: 65  WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWF 124
           W PG   P++L GSL GD GFDPLGL  DPE LKWF QAEL++ RWAML VAG+LLPE F
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 125 ESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLKLPHK 184
             +G+I    WYDAG  +YFA   TL V +  L  +VE RRW D+ NPGSV+ D      
Sbjct: 117 TKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 176

Query: 185 KRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 244
             P  +VGYPGG  F+P+ +      P    + KE+ NGRLAMLAF+G   Q   TG+GP
Sbjct: 177 SLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGP 236

Query: 245 LENLAAHVADPGHCNIFSAFS 266
            ENL  H++DP H  I   F+
Sbjct: 237 FENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of Cp4.1LG04g11230 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-44
Identity = 95/228 (41.67%), Postives = 135/228 (59.21%), Query Frame = 0


Query: 37  LRRGSTHLKAAKSGVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPEL 96
           + R  + +KAA  G++     +  +R  W PG  PP +LDG+L GD+GFDPLGLG DPE 
Sbjct: 24  ITRRISSVKAAGGGINPT---VAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPES 83

Query: 97  LKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREY-FADPMTLLVAQL 156
           LKW+ QAEL+H+R+AML VAGIL  +   + G+     WY+AG  ++ FA   TL+V Q 
Sbjct: 84  LKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQF 143

Query: 157 GLMGWVEGRRWADMVNPGSVDVDLKL---PHKKRPTPDVGYPGGFWFDPMMWGRGSPEPV 216
            LMG+ E +R+ D V+PGS   +              + GYPGG   +P+   +   +  
Sbjct: 144 LLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNA 203

Query: 217 MVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNI 261
              + KEIKNGRLAM+A +G + QA  T  GP++NL  H+++P H  I
Sbjct: 204 HDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247

[Close]

BLAST of Cp4.1LG04g11230 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-44
Identity = 95/228 (41.67%), Postives = 135/228 (59.21%), Query Frame = 0


Query: 37  LRRGSTHLKAAKSGVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPEL 96
           + R  + +KAA  G++     +  +R  W PG  PP +LDG+L GD+GFDPLGLG DPE 
Sbjct: 24  ITRRISSVKAAGGGINPT---VAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPES 83

Query: 97  LKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREY-FADPMTLLVAQL 156
           LKW+ QAEL+H+R+AML VAGIL  +   + G+     WY+AG  ++ FA   TL+V Q 
Sbjct: 84  LKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQF 143

Query: 157 GLMGWVEGRRWADMVNPGSVDVDLKL---PHKKRPTPDVGYPGGFWFDPMMWGRGSPEPV 216
            LMG+ E +R+ D V+PGS   +              + GYPGG   +P+   +   +  
Sbjct: 144 LLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNA 203

Query: 217 MVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNI 261
              + KEIKNGRLAM+A +G + QA  T  GP++NL  H+++P H  I
Sbjct: 204 HDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g11230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCQ4	4.5e-109	69.14	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
P13869	5.4e-86	67.96	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
P10708	1.7e-84	64.02	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
Q9SYW8	1.7e-84	59.91	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P27521	1.3e-52	51.24	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Cp4.1LG04g11230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529387.1	2.24e-207	100.00	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucur...	[more]
XP_023529386.1	1.57e-205	99.63	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X1 [Cucur...	[more]
XP_022929243.1	1.02e-203	97.77	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucur...	[more]
KAG6588096.1	1.70e-202	97.03	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic, partial [Cucurbi...	[more]
XP_022929235.1	7.17e-202	97.41	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X1 [Cucur...	[more]

BLAST of Cp4.1LG04g11230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERI7	4.95e-204	97.77	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1ETS8	3.47e-202	97.41	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HWP6	6.54e-199	96.28	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1HS79	4.58e-197	95.93	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1D327	4.18e-181	90.33	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Cp4.1LG04g11230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19150.1	3.2e-110	69.14	photosystem I light harvesting complex gene 6	[more]
AT3G61470.1	1.2e-85	59.91	photosystem I light harvesting complex gene 2	[more]
AT3G47470.1	9.5e-54	51.24	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G45474.1	1.1e-44	41.67	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	1.1e-44	41.67	photosystem I light harvesting complex gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 71..237 e-value: 1.3E-51 score: 175.3
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 72..257 e-value: 5.1E-68 score: 230.7
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..264
None	No IPR available	PANTHER	PTHR21649:SF5	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC	coord: 1..264
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 61..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g11230.1	Cp4.1LG04g11230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding