Cp4.1LG04g11040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g11040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type E3 ubiquitin transferase
Location	Cp4.1LG04: 9159404 .. 9160246 (+)
RNA-Seq Expression	Cp4.1LG04g11040
Synteny	Cp4.1LG04g11040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACGTCTCATCCTGCAAAATCCAGCCTACCCATGTTGTATTATGGCCTTGTGGTCATCGGAACGGCGACGATTGTGTTGGTTCTTTACAATCTCATCATTATCAAGTGGTGCTCCGACAACAGCCACGGGCAAGCTTCACCGGCACTGGCTGGAAGTTATGCAGAGATGGTGAATTCAAGCCGTAGCTTCCAGAGTTCTAATAGGAATTTGTTGTCGAGCTTCAAGTTCAAGAAGGGGTCGATGGNTGGAAGTTATGCAGAGATGGTGAATTCAAGCCGTAGCTTCCAGAGTTCTAATAGGAATTTGTTGTCGAGCTTCAAATTCAAGAAGGGGTNTGAATTCAAGCCGTAGCTTCCAGAGTTCTAATAGGAATTTGTTGTCGAGCTTCAAGTTCAAGAAGGGGTCGATGGCGACGGCGACGGCGACGATCGAGGAAGAAGGGATTGGGAATGAGTGTGCAGTTTGTTTATCGGCGTTTGAGGATGGGGAAGAGGTGAAGAAACTGCCAAGATGCACGCATATGTTTCACGCCCCTTGTATAGATATGTGGCTTTACTCTCACTCCGATTGCCCCCTCTGCCGTGCACCGGTGATGGCACCGGCGCTGTGCCAACGCCACACGGCGGAGGCTGCGGCGGAGTAACAGGTGAATTCAGGGTATGGCCTGTTGGAATCCGGTAGCTTGGTTTAAGACATTGGTTGTTTAGTTTATAATTTTGAAATGGGAGGTTGGATTTGGAAAATTCTGATTCNCCCCCTCTGCCGTGCACCGGTGATGGCACCGGCGCTGTGCCAAAGCCACACGGCGGAGGCTGCGGCGGAGTAACAGGAGAATTCAGG

mRNA sequence

CCAACGTCTCATCCTGCAAAATCCAGCCTACCCATGTTGTATTATGGCCTTGTGGTCATCGGAACGGCGACGATTGTGTTGGTTCTTTACAATCTCATCATTATCAAGTGGTGCTCCGACAACAGCCACGGGCAAGCTTCACCGGCACTGGCTGGAAGTTATGCAGAGATGGTGAATTCAAGCCGTAGCTTCCAGAGTTCTAATAGGAATTTGTTGTCGAGCTTCAAGTTCAAGAAGGGCCGTAGCTTCCAGAGTTCTAATAGGAATTTGTTGTCGAGCTTCAAGTTCAAGAAGGGGTCGATGGCGACGGCGACGGCGACGATCGAGGAAGAAGGGATTGGGAATGAGTGTGCAGTTTGTTTATCGGCGTTTGAGGATGGGGAAGAGGTGAAGAAACTGCCAAGATGCACGCATATGTTTCACGCCCCTTGTATAGATATGTGGCTTTACTCTCACTCCGATTGCCCCCTCTGCCGTGCACCGGTGATGGCACCGGCGCTGTGCCAACGCCACACGGCGGAGGCTGCGGCGGAGTTGGATTTGGAAAATTCTGATTCNCCCCCTCTGCCGTGCACCGGTGATGGCACCGGCGCTGTGCCAAAGCCACACGGCGGAGGCTGCGGCGGAGTAACAGGAGAATTCAGG

Coding sequence (CDS)

CCAACGTCTCATCCTGCAAAATCCAGCCTACCCATGTTGTATTATGGCCTTGTGGTCATCGGAACGGCGACGATTGTGTTGGTTCTTTACAATCTCATCATTATCAAGTGGTGCTCCGACAACAGCCACGGGCAAGCTTCACCGGCACTGGCTGGAAGTTATGCAGAGATGGTGAATTCAAGCCGTAGCTTCCAGAGTTCTAATAGGAATTTGTTGTCGAGCTTCAAGTTCAAGAAGGGCCGTAGCTTCCAGAGTTCTAATAGGAATTTGTTGTCGAGCTTCAAGTTCAAGAAGGGGTCGATGGCGACGGCGACGGCGACGATCGAGGAAGAAGGGATTGGGAATGAGTGTGCAGTTTGTTTATCGGCGTTTGAGGATGGGGAAGAGGTGAAGAAACTGCCAAGATGCACGCATATGTTTCACGCCCCTTGTATAGATATGTGGCTTTACTCTCACTCCGATTGCCCCCTCTGCCGTGCACCGGTGATGGCACCGGCGCTGTGCCAACGCCACACGGCGGAGGCTGCGGCGGAGTTGGATTTGGAAAATTCTGATTCNCCCCCTCTGCCGTGCACCGGTGATGGCACCGGCGCTGTGCCAAAGCCACACGGCGGAGGCTGCGGCGGAGTAACAGGAGAATTCAGG

Protein sequence

PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNSSRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECAVCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEAAAELDLENSDSPPLPCTGDGTGAVPKPHGGGCGGVTGEFR

Homology

[Close]

BLAST of Cp4.1LG04g11040 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.1e-16
Identity = 54/160 (33.75%), Postives = 83/160 (51.88%), Query Frame = 0


Query: 3   SHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNSSR 62
           S  + SS   L   L+ I T+ ++LV Y  +I K+C  +    +S  L      + ++  
Sbjct: 47  SSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETL-----NLNHNGE 106

Query: 63  SFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGI--GNECAVC 122
            F SS + + ++     G     S    ++ +K+K G           +G   G++C+VC
Sbjct: 107 GFFSSTQRISTN-----GDGLNESMIKSITVYKYKSG-----------DGFVDGSDCSVC 166

Query: 123 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRA 161
           LS FE+ E ++ LP+C H FH PCID WL SHS+CPLCRA
Sbjct: 167 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of Cp4.1LG04g11040 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.0e-16
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 88  RNLLSSFKFKKGSMATATATIEEEGIGNECAVCLSAFEDGEEVKKLPRCTHMFHAPCIDM 147
           R+L  +   +  + A A    EE+  G ECAVCL+  EDGEE + LPRC H FHA C+DM
Sbjct: 105 RSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDM 164

Query: 148 WLYSHSDCPLCRAPVMAP 166
           WL SHS CPLCR  V+ P
Sbjct: 165 WLGSHSTCPLCRLTVVVP 182

[Close]

BLAST of Cp4.1LG04g11040 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-14
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 89  NLLSSFKFKKGSMATATATIEEEGI--GNECAVCLSAFEDGEEVKKLPRCTHMFHAPCID 148
           N ++   FKKG           EGI  G EC+VCL+ FE+ E ++ LP+C+H FH  CID
Sbjct: 116 NSITVVGFKKG-----------EGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCID 175

Query: 149 MWLYSHSDCPLCRAPVMAPALCQRHTAEAAAELDLENSD 186
            WL SH +CPLCRAPV+          E   + D E+S+
Sbjct: 176 TWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSN 203

[Close]

BLAST of Cp4.1LG04g11040 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 9.8e-14
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 116 ECAVCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEA 175
           ECAVCLS FE+ E  + LP C H FH  CIDMW +SHS CPLCR+ V + A  +   A  
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAR 177

Query: 176 AAELDLENSDSPPLPC-TGDGTGAVPKPHGGG 207
             E+ +     P L       +G   +PHG G
Sbjct: 178 EREVVIAVDSDPVLVIEPSSSSGLTDEPHGSG 209

[Close]

BLAST of Cp4.1LG04g11040 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.8e-14
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 79  KGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECAVCLSAFEDGEEVKKLPRCTH 138
           K ++ QS  R+  ++ +   G+ A       EEG   ECA+CL+ F DGEE++ LP C H
Sbjct: 71  KKKALQSLPRSTFTAAESTSGAAA-------EEGDSTECAICLTDFADGEEIRVLPLCGH 130

Query: 139 MFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEAAAEL 180
            FH  CID WL S S CP CR  ++ P  C R    + AE+
Sbjct: 131 SFHVECIDKWLVSRSSCPSCRR-ILTPVRCDRCGHASTAEM 163

[Close]

BLAST of Cp4.1LG04g11040 vs. NCBI nr
Match: KAG6588064.1 (RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021960.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301 bits (770), Expect = 1.85e-101
Identity = 158/180 (87.78%), Postives = 159/180 (88.33%), Query Frame = 0


Query: 1   PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 60
           PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSD+SHGQASPALAGSYAEMVNS
Sbjct: 12  PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDDSHGQASPALAGSYAEMVNS 71

Query: 61  SRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATA--TATIEEEGIGNECA 120
           SRSFQSSNR                   NLLSSFKFKKGSMATA  TATIEEEGIGNECA
Sbjct: 72  SRSFQSSNR-------------------NLLSSFKFKKGSMATAAATATIEEEGIGNECA 131

Query: 121 VCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEAAAE 178
           VCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEAAAE
Sbjct: 132 VCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEAAAE 172

[Close]

BLAST of Cp4.1LG04g11040 vs. NCBI nr
Match: XP_022968369.1 (RING-H2 finger protein ATL52-like [Cucurbita maxima])

HSP 1 Score: 299 bits (766), Expect = 1.22e-100
Identity = 155/178 (87.08%), Postives = 155/178 (87.08%), Query Frame = 0


Query: 1   PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 60
           PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS
Sbjct: 12  PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 71

Query: 61  SRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECAVC 120
           SRSFQSSNR                   NLLSSFKFKKGS A ATATIEEEGIGNECAVC
Sbjct: 72  SRSFQSSNR-------------------NLLSSFKFKKGSTAKATATIEEEGIGNECAVC 131

Query: 121 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEAAAE 178
           LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAP MAPALCQRHTAE AAE
Sbjct: 132 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPAMAPALCQRHTAEDAAE 170

[Close]

BLAST of Cp4.1LG04g11040 vs. NCBI nr
Match: XP_022927302.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita moschata])

HSP 1 Score: 291 bits (745), Expect = 1.03e-97
Identity = 153/176 (86.93%), Postives = 154/176 (87.50%), Query Frame = 0


Query: 1   PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 60
           PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSD+SHGQAS ALAGSYAEMVNS
Sbjct: 12  PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDDSHGQASTALAGSYAEMVNS 71

Query: 61  SRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATA--TATIEEEGIGNECA 120
           SRSFQSSNR                   NLLSSFKFKKGSMATA  TATIEEEGIGNECA
Sbjct: 72  SRSFQSSNR-------------------NLLSSFKFKKGSMATAAATATIEEEGIGNECA 131

Query: 121 VCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAE 174
           VCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAE
Sbjct: 132 VCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAE 168

[Close]

BLAST of Cp4.1LG04g11040 vs. NCBI nr
Match: KAG6590024.1 (RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023686.1 RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245 bits (625), Expect = 3.15e-79
Identity = 128/173 (73.99%), Postives = 133/173 (76.88%), Query Frame = 0


Query: 1   PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 60
           PTSHPAKSSLPMLYYGLVVIGTA IVLVLYN I+I WCSDN  G+ASPALAGSYAEMVNS
Sbjct: 12  PTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPALAGSYAEMVNS 71

Query: 61  SRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECAVC 120
           SRS QSSNR                   NLL SFKFKKGS A ATA  EEEG GNEC VC
Sbjct: 72  SRSLQSSNR-------------------NLLCSFKFKKGSAAAATAAAEEEGNGNECVVC 131

Query: 121 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTA 173
           LSAFE+GEEVKKLPRC HMFHA CIDMWL+SH DCPLCRAPV  P L +R TA
Sbjct: 132 LSAFEEGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTA 165

[Close]

BLAST of Cp4.1LG04g11040 vs. NCBI nr
Match: XP_022987479.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita maxima])

HSP 1 Score: 239 bits (611), Expect = 3.83e-77
Identity = 124/173 (71.68%), Postives = 132/173 (76.30%), Query Frame = 0


Query: 1   PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 60
           PT+HPAKSSLPMLYYGLVVIGTA IVLVLYN I+I WCSDN  G+ASPALAGSYAEMVNS
Sbjct: 12  PTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPALAGSYAEMVNS 71

Query: 61  SRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECAVC 120
           SRS QSSNRNLL SFKFKKG                      +A A +EEEG GNEC VC
Sbjct: 72  SRSLQSSNRNLLCSFKFKKG----------------------SAAAAVEEEGNGNECVVC 131

Query: 121 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTA 173
           LSAFE+GEEVKKLPRC HMFHA CIDMWL+SH DCPLCRAPV  P L +R TA
Sbjct: 132 LSAFEEGEEVKKLPRCLHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTA 162

[Close]

BLAST of Cp4.1LG04g11040 vs. ExPASy TrEMBL
Match: A0A6J1HZG2 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111467629 PE=3 SV=1)

HSP 1 Score: 299 bits (766), Expect = 5.91e-101
Identity = 155/178 (87.08%), Postives = 155/178 (87.08%), Query Frame = 0


Query: 1   PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 60
           PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS
Sbjct: 12  PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 71

Query: 61  SRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECAVC 120
           SRSFQSSNR                   NLLSSFKFKKGS A ATATIEEEGIGNECAVC
Sbjct: 72  SRSFQSSNR-------------------NLLSSFKFKKGSTAKATATIEEEGIGNECAVC 131

Query: 121 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEAAAE 178
           LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAP MAPALCQRHTAE AAE
Sbjct: 132 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPAMAPALCQRHTAEDAAE 170

[Close]

BLAST of Cp4.1LG04g11040 vs. ExPASy TrEMBL
Match: A0A6J1EGS5 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111434176 PE=3 SV=1)

HSP 1 Score: 291 bits (745), Expect = 5.01e-98
Identity = 153/176 (86.93%), Postives = 154/176 (87.50%), Query Frame = 0


Query: 1   PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 60
           PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSD+SHGQAS ALAGSYAEMVNS
Sbjct: 12  PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDDSHGQASTALAGSYAEMVNS 71

Query: 61  SRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATA--TATIEEEGIGNECA 120
           SRSFQSSNR                   NLLSSFKFKKGSMATA  TATIEEEGIGNECA
Sbjct: 72  SRSFQSSNR-------------------NLLSSFKFKKGSMATAAATATIEEEGIGNECA 131

Query: 121 VCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAE 174
           VCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAE
Sbjct: 132 VCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAE 168

[Close]

BLAST of Cp4.1LG04g11040 vs. ExPASy TrEMBL
Match: A0A6J1JJ05 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 PE=3 SV=1)

HSP 1 Score: 239 bits (611), Expect = 1.85e-77
Identity = 124/173 (71.68%), Postives = 132/173 (76.30%), Query Frame = 0


Query: 1   PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 60
           PT+HPAKSSLPMLYYGLVVIGTA IVLVLYN I+I WCSDN  G+ASPALAGSYAEMVNS
Sbjct: 12  PTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPALAGSYAEMVNS 71

Query: 61  SRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECAVC 120
           SRS QSSNRNLL SFKFKKG                      +A A +EEEG GNEC VC
Sbjct: 72  SRSLQSSNRNLLCSFKFKKG----------------------SAAAAVEEEGNGNECVVC 131

Query: 121 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTA 173
           LSAFE+GEEVKKLPRC HMFHA CIDMWL+SH DCPLCRAPV  P L +R TA
Sbjct: 132 LSAFEEGEEVKKLPRCLHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTA 162

[Close]

BLAST of Cp4.1LG04g11040 vs. ExPASy TrEMBL
Match: A0A6J1H7W2 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111461337 PE=3 SV=1)

HSP 1 Score: 239 bits (610), Expect = 2.72e-77
Identity = 125/173 (72.25%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 1   PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 60
           PTSHPAKSSLPMLYYGLVVIGTA IVLVLYN I+I WCSDN  G+ASPALAGSYAEMVNS
Sbjct: 12  PTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPALAGSYAEMVNS 71

Query: 61  SRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECAVC 120
           SRS QSSNRNLL SFKFKKG                     + A A  EEEG GNEC VC
Sbjct: 72  SRSLQSSNRNLLCSFKFKKG---------------------SAAAAAAEEEGNGNECVVC 131

Query: 121 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTA 173
           LSAFE+GEEVKKLPRC HMFHA CIDMWL+SH DCPLCRAPV  P L +R TA
Sbjct: 132 LSAFEEGEEVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTA 163

[Close]

BLAST of Cp4.1LG04g11040 vs. ExPASy TrEMBL
Match: A0A6J1D0Z7 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111016600 PE=3 SV=1)

HSP 1 Score: 234 bits (597), Expect = 2.84e-75
Identity = 124/179 (69.27%), Postives = 135/179 (75.42%), Query Frame = 0


Query: 1   PTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNS 60
           PT HPAKSSLPMLYYGLVV+GTA IVLV+YN I+I+WCSD   G+ SP +A SYAEM++S
Sbjct: 14  PTPHPAKSSLPMLYYGLVVVGTAAIVLVVYNFIVIRWCSDR-RGRGSPGMARSYAEMMSS 73

Query: 61  SRSFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECAVC 120
           S SFQSS+RNLLSSF+FKKG                       A AT EEEG G ECAVC
Sbjct: 74  SGSFQSSSRNLLSSFRFKKG--------------------TKAAAATAEEEGNGLECAVC 133

Query: 121 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPV-MAPALCQRHTAEAAAE 178
           LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPV +AP LCQ HTA    E
Sbjct: 134 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVALAPGLCQHHTAAEQPE 171

[Close]

BLAST of Cp4.1LG04g11040 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-17
Identity = 54/160 (33.75%), Postives = 83/160 (51.88%), Query Frame = 0


Query: 3   SHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNSSR 62
           S  + SS   L   L+ I T+ ++LV Y  +I K+C  +    +S  L      + ++  
Sbjct: 47  SSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETL-----NLNHNGE 106

Query: 63  SFQSSNRNLLSSFKFKKGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGI--GNECAVC 122
            F SS + + ++     G     S    ++ +K+K G           +G   G++C+VC
Sbjct: 107 GFFSSTQRISTN-----GDGLNESMIKSITVYKYKSG-----------DGFVDGSDCSVC 166

Query: 123 LSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRA 161
           LS FE+ E ++ LP+C H FH PCID WL SHS+CPLCRA
Sbjct: 167 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of Cp4.1LG04g11040 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-15
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 89  NLLSSFKFKKGSMATATATIEEEGI--GNECAVCLSAFEDGEEVKKLPRCTHMFHAPCID 148
           N ++   FKKG           EGI  G EC+VCL+ FE+ E ++ LP+C+H FH  CID
Sbjct: 116 NSITVVGFKKG-----------EGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCID 175

Query: 149 MWLYSHSDCPLCRAPVMAPALCQRHTAEAAAELDLENSD 186
            WL SH +CPLCRAPV+          E   + D E+S+
Sbjct: 176 TWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSN 203

[Close]

BLAST of Cp4.1LG04g11040 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 78.6 bits (192), Expect = 7.0e-15
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 79  KGRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECAVCLSAFEDGEEVKKLPRCTH 138
           K ++ QS  R+  ++ +   G+ A       EEG   ECA+CL+ F DGEE++ LP C H
Sbjct: 71  KKKALQSLPRSTFTAAESTSGAAA-------EEGDSTECAICLTDFADGEEIRVLPLCGH 130

Query: 139 MFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEAAAEL 180
            FH  CID WL S S CP CR  ++ P  C R    + AE+
Sbjct: 131 SFHVECIDKWLVSRSSCPSCRR-ILTPVRCDRCGHASTAEM 163

[Close]

BLAST of Cp4.1LG04g11040 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 78.6 bits (192), Expect = 7.0e-15
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 116 ECAVCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEA 175
           ECAVCLS FE+ E  + LP C H FH  CIDMW +SHS CPLCR+ V + A  +   A  
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAR 177

Query: 176 AAELDLENSDSPPLPC-TGDGTGAVPKPHGGG 207
             E+ +     P L       +G   +PHG G
Sbjct: 178 EREVVIAVDSDPVLVIEPSSSSGLTDEPHGSG 209

[Close]

BLAST of Cp4.1LG04g11040 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 9.1e-15
Identity = 55/185 (29.73%), Postives = 88/185 (47.57%), Query Frame = 0


Query: 6   AKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPALAGSYAEMVNSSRSFQ 65
           + S    L   L+ I  +  +LV Y  +I K+C    H  +S + A      ++S  ++Q
Sbjct: 52  SSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAA--INRISSDYTWQ 111

Query: 66  SSNRNLLSSFKFKK-------GRSFQSSNRNLLSSFKFKKGSMATATATIEEEGIGNECA 125
            +N N  +             G     S    ++ +K++K         +E     ++C+
Sbjct: 112 GTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRK-----MDGFVE----SSDCS 171

Query: 126 VCLSAFEDGEEVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVMAPALCQRHTAEAAAE 184
           VCLS F++ E ++ LP+C H FH PCID WL SHS+CPLCRA ++        T+ A   
Sbjct: 172 VCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIV--------TSSAVEI 217

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g11040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	6.1e-16	33.75	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LRB7	8.0e-16	52.56	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
Q9LX93	2.6e-14	42.42	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q8L9T5	9.8e-14	43.48	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
O22755	9.8e-14	40.59	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]

BLAST of Cp4.1LG04g11040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588064.1	1.85e-101	87.78	RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022968369.1	1.22e-100	87.08	RING-H2 finger protein ATL52-like [Cucurbita maxima]	[more]
XP_022927302.1	1.03e-97	86.93	E3 ubiquitin-protein ligase EL5-like [Cucurbita moschata]	[more]
KAG6590024.1	3.15e-79	73.99	RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_022987479.1	3.83e-77	71.68	E3 ubiquitin-protein ligase EL5-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG04g11040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZG2	5.91e-101	87.08	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111467629 P...	[more]
A0A6J1EGS5	5.01e-98	86.93	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111434176...	[more]
A0A6J1JJ05	1.85e-77	71.68	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 P...	[more]
A0A6J1H7W2	2.72e-77	72.25	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111461337...	[more]
A0A6J1D0Z7	2.84e-75	69.27	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11101660...	[more]

BLAST of Cp4.1LG04g11040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	4.4e-17	33.75	RING/U-box superfamily protein	[more]
AT5G10380.1	1.8e-15	42.42	RING/U-box superfamily protein	[more]
AT2G17450.1	7.0e-15	40.59	RING-H2 finger A3A	[more]
AT3G16720.1	7.0e-15	43.48	TOXICOS EN LEVADURA 2	[more]
AT3G03550.1	9.1e-15	29.73	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 117..158 e-value: 8.7E-6 score: 35.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 115..159 e-value: 6.2E-13 score: 48.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 117..159 score: 12.076194
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 72..165 e-value: 2.3E-20 score: 74.1
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 3..82
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 81..177
None	No IPR available	PANTHER	PTHR45676:SF84	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 81..177
None	No IPR available	PANTHER	PTHR45676:SF84	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 3..82
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 109..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g11040.1	Cp4.1LG04g11040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane