Cp4.1LG04g10960 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g10960
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	WD repeat-containing protein VIP3
Location	Cp4.1LG04: 9184727 .. 9186875 (-)
RNA-Seq Expression	Cp4.1LG04g10960
Synteny	Cp4.1LG04g10960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGAATTGAATCCATACAACGACGTCGTTTTGTTTTGCTGTCGTTTCCCTCTTCTTCGTATCTGTTGAAAATGCCACAGATAATCGCTTCCTCCTTCCTCCTCACCGGCTCCCTCGATGAGACCGTCAAGCTCTGGAAATCTGACGAGCTTGACTTGGACCGCACCAACACCGGCCACTGCCTTGGCGTCGTCTCTGTTGTTGCTCGTCCTTCCGGTTACGTTGCTGCCTCCGCTTCTCTCGATAGCTTTGTTCGCGTATTTGAGGTTGGTTCCAATTCCACTATCGCCACTCTTGAGGCGCCGCCGTCTGAGGTCTGGCAAATGCGGTTTAATCCCGAGGTAATTCTTCTTTGGCTTATTGATGTTTTGATTTTTGTGCTGTTTAGGAATTTTTTGCTGCTCTTTGATTTGAGATTTAACTAAGAATTTGAGATTGTTTTGCCTTTCACGTAAGGGCTAATTGACATAGTAATCTTTTCTTTTGCTCTGGTTCTTTCTTGGTACAAGATGCCTGATTCAGTAGATTATTGAATCTCAGTTTGTTCATTAACTTGATTCTTGAATGGAGGAAACATCCGTCGATGACTGTGTTTTGATGAACTATAGGCTGTTTATTGTTAATTTCACTTGGATCAACGGTTCACTTTTACTCAGACCGTAGTCTATGGAATTCGATGTGTTCAATTTCATATTGGTACGCTGAATAATGGACTGAATTGAGTTATGAATCATATGCTGAAGCAATTTTCAATTCTTTTCATATACAAATTAGCCCTTTAAATACAGAAATTGAGATCTCATTTGTGACAGAAACACTTACTCGTCGAGATGTCTATTTTTAGTAAATAGTTTATCATATTTACTATTGTATATGACATTCGACTAAAGCCATGAATGAATATAATGCCTATAGTGTTGTGCTCAATAGCATTTGCAGTTGCTTTGGGTAATTCTGATGGTTCTTTTCACACTGCACAAACGTCAACCATTCTCTGATATTCAACCCAAAAACGTGGTTCTTGTAAACCCATCAATATATAGATCTGAATATTGTTCGTTGTCATTTATGGAAGTTTAGACTATTTTAACTTTATGGCTGACCTGTTGTTTCTTTTAACTGAACTACTTTGTCCTGTTTGTTCTTTAATTCAACAACCTAAATCAATGAGAGCAGTGTTTCAGTTTTATTCAATCTAACCAGTAAAGAAAACCCACAAAAAATCATTTAATCTGTCTCCTGTCATGTCCAATCTTAGCAGTAACTTCTGCGTCAGGGTACCATGTCATGAGACAGATACAATCACATGGCAACTGGCTGCAACTCTATCAATTCCTCGTCCAGAAGGACCTAAACCCACTGATAAAACTGTTTGCAAAAATCTGTACTTGCAGTATCATGGAGCGTTGATGGAAGAAGACTTGCTTGCGGTTTAATGGATGGAACCATTTCAGTCTTAGACGTAGCTCGCTCAAAGTTTCTACACCACTTGGAAGGCCACTTCATGCCAGTGAGATCCCCACCGCCGCTAGTAGATATTGTTTTCTTTGGACTTTTCTTCAAGGTTTTTAAAAAGCAGGTTTCTCATATTGGTCATGGGCTGAGAACGGGAATTGAATTCTCTGAAACCTAATTTATTGTTGTTTCTCAGTAGCTCAGTGGTAGAGAGGTCGGCTGTTAACCGATTGGCCGTAGGTTCGAATCCTATTTGGGTAGATTTGATTCATTCCGAATTGAAAAGGTTCGCTTTGACCGTCAAGAGTAGGGATAACCCATTCGGTTCCCTATGTCTTTGTTTCTGTTGCATTCTATCTTATCGTATCAAATTTTGTTCTGCCATATTTGAGAATCATCGTAGTCTGGTCTATTTACAAGCTAGGAAGAGAGATCGCCATGTCCGGCCATTCAAGTGTGGGGTGTTGAGTGTTGATGCAAGCCCTGATGGTGCTCTTGCAACAGGTTCAAGCGACAGAACTGTTATGCTTTGGGATCTTAAAACGAGGGAGGCTGTTCAAACAATGATTAAGCATAGCGATCAGGTCTGCTGGGGTGTTGTTGCATTCCGACCGCATGATGGGGCTGGTGTGGAGGCTGGGCGACATGCTAGTGTATCCGATGACAAGAGCATCTCCCTGTACGATTACATTTGA

mRNA sequence

CGGAATTGAATCCATACAACGACGTCGTTTTGTTTTGCTGTCGTTTCCCTCTTCTTCGTATCTGTTGAAAATGCCACAGATAATCGCTTCCTCCTTCCTCCTCACCGGCTCCCTCGATGAGACCGTCAAGCTCTGGAAATCTGACGAGCTTGACTTGGACCGCACCAACACCGGCCACTGCCTTGGCGTCGTCTCTGTTGTTGCTCGTCCTTCCGGTTACGTTGCTGCCTCCGCTTCTCTCGATAGCTTTGTTCGCGTATTTGAGGTTGGTTCCAATTCCACTATCGCCACTCTTGAGGCGCCGCCGTCTGAGGTCTGGCAAATGCGGTTTAATCCCGAGTGTGGGGTGTTGAGTGTTGATGCAAGCCCTGATGGTGCTCTTGCAACAGGTTCAAGCGACAGAACTGTTATGCTTTGGGATCTTAAAACGAGGGAGGCTGTTCAAACAATGATTAAGCATAGCGATCAGGTCTGCTGGGGTGTTGTTGCATTCCGACCGCATGATGGGGCTGGTGTGGAGGCTGGGCGACATGCTAGTGTATCCGATGACAAGAGCATCTCCCTGTACGATTACATTTGA

Coding sequence (CDS)

ATGCCACAGATAATCGCTTCCTCCTTCCTCCTCACCGGCTCCCTCGATGAGACCGTCAAGCTCTGGAAATCTGACGAGCTTGACTTGGACCGCACCAACACCGGCCACTGCCTTGGCGTCGTCTCTGTTGTTGCTCGTCCTTCCGGTTACGTTGCTGCCTCCGCTTCTCTCGATAGCTTTGTTCGCGTATTTGAGGTTGGTTCCAATTCCACTATCGCCACTCTTGAGGCGCCGCCGTCTGAGGTCTGGCAAATGCGGTTTAATCCCGAGTGTGGGGTGTTGAGTGTTGATGCAAGCCCTGATGGTGCTCTTGCAACAGGTTCAAGCGACAGAACTGTTATGCTTTGGGATCTTAAAACGAGGGAGGCTGTTCAAACAATGATTAAGCATAGCGATCAGGTCTGCTGGGGTGTTGTTGCATTCCGACCGCATGATGGGGCTGGTGTGGAGGCTGGGCGACATGCTAGTGTATCCGATGACAAGAGCATCTCCCTGTACGATTACATTTGA

Protein sequence

MPQIIASSFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVGSNSTIATLEAPPSEVWQMRFNPECGVLSVDASPDGALATGSSDRTVMLWDLKTREAVQTMIKHSDQVCWGVVAFRPHDGAGVEAGRHASVSDDKSISLYDYI

Homology

[Close]

BLAST of Cp4.1LG04g10960 vs. ExPASy Swiss-Prot
Match: Q9SZQ5 (WD repeat-containing protein VIP3 OS=Arabidopsis thaliana OX=3702 GN=VIP3 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.1e-44
Identity = 120/292 (41.10%), Postives = 136/292 (46.58%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           + LLTGSLDETVKLW+ DELDL RTNTGH LGV ++ A PSG +AAS+S+DSFVRVF+V 
Sbjct: 31  ALLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHPSGIIAASSSIDSFVRVFDVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           +N+TIA LEAPPSEVW M+F P+                                     
Sbjct: 91  TNATIAVLEAPPSEVWGMQFEPKGTILAVAGGSSASVKLWDTASWRLISTLSIPRPDAPK 150

Query: 128 ------------------------CG---------------------------------- 169
                                   CG                                  
Sbjct: 151 PSDKTSSKKFVLSVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. ExPASy Swiss-Prot
Match: Q6PBD6 (WD repeat-containing protein 61 OS=Xenopus tropicalis OX=8364 GN=wdr61 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-16
Identity = 64/195 (32.82%), Postives = 99/195 (50.77%), Query Frame = 0


Query: 7   SSFLLTGSLDETVKLWK-SDE-LDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVF 66
           S  +++GSLD+ VK+WK SDE L+L  T  GH LGVVSV   PSG + AS+SLD+ +R++
Sbjct: 32  SELVISGSLDDLVKVWKWSDERLELQSTLEGHQLGVVSVDVSPSGNIMASSSLDAHIRLW 91

Query: 67  EVGSNSTIATLEAPPSEVWQMRFNP-------------------ECG------------V 126
           ++ S   I  ++A P + W + F+P                   E G            +
Sbjct: 92  DLESGKQIRAIDAGPVDAWSVAFSPDSQHLATGSHVGKVNIFGVETGKKEYSLDTRGKFI 151

Query: 127 LSVDASPDGA-LATGSSDRTVMLWDLKTREAVQTMIKHSDQVCWGVVAFRPHDGAGVEAG 168
           LS+  SPDG  LA+G+ D  + ++D+ T + + T+  H+  +    + F P     V A 
Sbjct: 152 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI--RSLTFSPDSQLLVTA- 211

[Close]

BLAST of Cp4.1LG04g10960 vs. ExPASy Swiss-Prot
Match: Q5ZJH5 (WD repeat-containing protein 61 OS=Gallus gallus OX=9031 GN=WDR61 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 61/195 (31.28%), Postives = 99/195 (50.77%), Query Frame = 0


Query: 7   SSFLLTGSLDETVKLWK--SDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVF 66
           S  +++GSLD+ VK+WK   ++LDL  T  GH LGVVSV    +G +AAS+SLD+ +R++
Sbjct: 32  SETVISGSLDDLVKVWKWNDEKLDLQWTLEGHQLGVVSVDISHTGSIAASSSLDAHIRLW 91

Query: 67  EVGSNSTIATLEAPPSEVWQMRFNP-------------------ECG------------V 126
           ++ +   I +++A P + W + F+P                   E G            +
Sbjct: 92  DLETGKQIKSIDAGPVDAWSLAFSPDSQFLATGSHVGKVNIFGVETGKKEYSLDTRGKFI 151

Query: 127 LSVDASPDGA-LATGSSDRTVMLWDLKTREAVQTMIKHSDQVCWGVVAFRPHDGAGVEAG 168
           LS+  SPDG  LA+G+ D  + ++D+ T + + T+  H+  +    + F P     V A 
Sbjct: 152 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI--RSLTFSPDSQLLVTA- 211

[Close]

BLAST of Cp4.1LG04g10960 vs. ExPASy Swiss-Prot
Match: Q6P5M2 (WD repeat-containing protein 61 OS=Danio rerio OX=7955 GN=wdr61 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 64/195 (32.82%), Postives = 100/195 (51.28%), Query Frame = 0


Query: 7   SSFLLTGSLDETVKLWK-SDE-LDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVF 66
           S  ++TGSLD+ VK+WK SDE L+L  T  GH LGVVSV    +G +AAS+SLD+ +R++
Sbjct: 32  SETIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLW 91

Query: 67  EVGSNSTIATLEAPPSEVWQMRFNP-------------------ECG------------V 126
           ++ +   I +++A P + W + F+P                   E G            +
Sbjct: 92  DLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDTRGKFI 151

Query: 127 LSVDASPDGA-LATGSSDRTVMLWDLKTREAVQTMIKHSDQVCWGVVAFRPHDGAGVEAG 168
           LS+  SPDG  LA+G+ D  + ++D+ T + + T+  H+  +    + F P     V A 
Sbjct: 152 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI--RSLTFSPDSQLLVTA- 211

[Close]

BLAST of Cp4.1LG04g10960 vs. ExPASy Swiss-Prot
Match: Q6GMD2 (WD repeat-containing protein 61 OS=Xenopus laevis OX=8355 GN=wdr61 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-15
Identity = 53/159 (33.33%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 7   SSFLLTGSLDETVKLWK-SDE-LDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVF 66
           S  +++GSLD+ VK+WK SDE L++     GH LGVVSV   PSG + AS+SLD+ +R++
Sbjct: 32  SELVISGSLDDLVKVWKWSDERLEMQWALEGHQLGVVSVDVSPSGNIMASSSLDAHIRLW 91

Query: 67  EVGSNSTIATLEAPPSEVWQMRFNP-------------------ECG------------V 126
           ++ S   I +++A P + W + F+P                   E G            +
Sbjct: 92  DLESGKQIRSIDAGPVDAWSVAFSPDSQHLATGSHVGKVNIFGVETGKKEYSLDTRGKFI 151

Query: 127 LSVDASPDGA-LATGSSDRTVMLWDLKTREAVQTMIKHS 132
           LS+  SPDG  LA+G+ D  + ++D+ T + + T+  H+
Sbjct: 152 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 190

[Close]

BLAST of Cp4.1LG04g10960 vs. NCBI nr
Match: KAG6588060.1 (WD repeat-containing protein VIP3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312 bits (800), Expect = 2.03e-106
Identity = 162/199 (81.41%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 1   MPQIIASSFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSF 60
           MPQIIASSFLLTGSLDETVKLWKSDELDLDR NTGHCLGVVSVVA PSGYVAASASLDSF
Sbjct: 1   MPQIIASSFLLTGSLDETVKLWKSDELDLDRANTGHCLGVVSVVAHPSGYVAASASLDSF 60

Query: 61  VRVFEVGSNSTIATLEAPPSEVWQMRFNPEC----------------------------- 120
           VRVFEVGSNSTIATLEAPPSEVWQMRFNPE                              
Sbjct: 61  VRVFEVGSNSTIATLEAPPSEVWQMRFNPESTAGSIGFQKSAWFSSPIDTESHVPMSGDS 120

Query: 121 -GVLSVDASPDGALATGSSDRTVMLWDLKTREAVQTMIKHSDQVCWGVVAFRPHDGAGVE 169
            GVLSVDASPDGA+ATGSSDRTVMLWDL+ R AVQTMIKHSDQVCWGVVAFRPHDGAGVE
Sbjct: 121 SGVLSVDASPDGAVATGSSDRTVMLWDLQMRAAVQTMIKHSDQVCWGVVAFRPHDGAGVE 180

[Close]

BLAST of Cp4.1LG04g10960 vs. NCBI nr
Match: XP_004144016.1 (WD repeat-containing protein VIP3 [Cucumis sativus])

HSP 1 Score: 210 bits (534), Expect = 2.65e-64
Identity = 139/292 (47.60%), Postives = 144/292 (49.32%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           S LLTGSLDETVKLWKSDELDL+RTNTGHCLGVVSV A PSG++AASASLDSFVRVFEV 
Sbjct: 31  SLLLTGSLDETVKLWKSDELDLERTNTGHCLGVVSVAAHPSGFIAASASLDSFVRVFEVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           SNSTIATLEAPPSEVWQMRFNPE                                     
Sbjct: 91  SNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKLWDTNTWKLAATLSIPRPEGPK 150

Query: 128 ------------------------CG---------------------------------- 168
                                   CG                                  
Sbjct: 151 PTDKTASKKFVLSVAWSIDGRRLACGSMDGTISVFDVARAKFLHHLEGHFMPVRSLVYSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. NCBI nr
Match: XP_008450896.1 (PREDICTED: WD repeat-containing protein VIP3 [Cucumis melo] >KAA0055801.1 WD repeat-containing protein VIP3 [Cucumis melo var. makuwa] >TYK10052.1 WD repeat-containing protein VIP3 [Cucumis melo var. makuwa])

HSP 1 Score: 210 bits (534), Expect = 2.65e-64
Identity = 139/292 (47.60%), Postives = 144/292 (49.32%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           S LLTGSLDETVKLWKSDELDL+RTNTGHCLGVVSV A PSG++AASASLDSFVRVFEV 
Sbjct: 31  SLLLTGSLDETVKLWKSDELDLERTNTGHCLGVVSVAAHPSGFIAASASLDSFVRVFEVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           SNSTIATLEAPPSEVWQMRFNPE                                     
Sbjct: 91  SNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKLWDTNTWKLAATLSIPRPEGPK 150

Query: 128 ------------------------CG---------------------------------- 168
                                   CG                                  
Sbjct: 151 PTDKTASKKFVLSVAWSIDGRRLACGSMDGTISIFDVARAKFLHHLEGHFMPVRSLVYSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. NCBI nr
Match: XP_022987787.1 (WD repeat-containing protein VIP3 [Cucurbita maxima] >XP_023515877.1 WD repeat-containing protein VIP3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209 bits (532), Expect = 5.16e-64
Identity = 140/292 (47.95%), Postives = 145/292 (49.66%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           S L+TGSLDETVKLWKSDELDLDRTNTGHCLGVVSV A PSGY+AASASLDSFVR+FEV 
Sbjct: 31  SLLVTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVAAHPSGYIAASASLDSFVRIFEVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           SNSTIATLEAPPSEVWQMRFNPE                                     
Sbjct: 91  SNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKIWDTSTWKLAATLSIPRPEGPK 150

Query: 128 ------------------------CG---------------------------------- 168
                                   CG                                  
Sbjct: 151 PTDKTASKKFVLSVAWSVDGRRLACGSMDGTISVFDVARAKFLHHLEGHFMPVRSLVYSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. NCBI nr
Match: XP_022960889.1 (WD repeat-containing protein VIP3 [Cucurbita moschata] >KAG7023680.1 WD repeat-containing protein VIP3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209 bits (532), Expect = 5.16e-64
Identity = 140/292 (47.95%), Postives = 145/292 (49.66%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           S L+TGSLDETVKLWKSDELDLDRTNTGHCLGVVSV A PSGY+AASASLDSFVR+FEV 
Sbjct: 31  SLLVTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVAAHPSGYIAASASLDSFVRIFEVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           SNSTIATLEAPPSEVWQMRFNPE                                     
Sbjct: 91  SNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKIWDTSTWKLAATLSIPRPEGPK 150

Query: 128 ------------------------CG---------------------------------- 168
                                   CG                                  
Sbjct: 151 PTDKTASKKFVLSVAWSVDGRRLACGSMDGTISVFDVARAKFLHHLEGHFMPVRSLVYSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. ExPASy TrEMBL
Match: A0A5D3CFF6 (WD repeat-containing protein VIP3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001850 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 1.28e-64
Identity = 139/292 (47.60%), Postives = 144/292 (49.32%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           S LLTGSLDETVKLWKSDELDL+RTNTGHCLGVVSV A PSG++AASASLDSFVRVFEV 
Sbjct: 31  SLLLTGSLDETVKLWKSDELDLERTNTGHCLGVVSVAAHPSGFIAASASLDSFVRVFEVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           SNSTIATLEAPPSEVWQMRFNPE                                     
Sbjct: 91  SNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKLWDTNTWKLAATLSIPRPEGPK 150

Query: 128 ------------------------CG---------------------------------- 168
                                   CG                                  
Sbjct: 151 PTDKTASKKFVLSVAWSIDGRRLACGSMDGTISIFDVARAKFLHHLEGHFMPVRSLVYSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. ExPASy TrEMBL
Match: A0A0A0LWK2 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G590260 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 1.28e-64
Identity = 139/292 (47.60%), Postives = 144/292 (49.32%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           S LLTGSLDETVKLWKSDELDL+RTNTGHCLGVVSV A PSG++AASASLDSFVRVFEV 
Sbjct: 31  SLLLTGSLDETVKLWKSDELDLERTNTGHCLGVVSVAAHPSGFIAASASLDSFVRVFEVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           SNSTIATLEAPPSEVWQMRFNPE                                     
Sbjct: 91  SNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKLWDTNTWKLAATLSIPRPEGPK 150

Query: 128 ------------------------CG---------------------------------- 168
                                   CG                                  
Sbjct: 151 PTDKTASKKFVLSVAWSIDGRRLACGSMDGTISVFDVARAKFLHHLEGHFMPVRSLVYSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. ExPASy TrEMBL
Match: A0A1S3BQZ8 (WD repeat-containing protein VIP3 OS=Cucumis melo OX=3656 GN=LOC103492347 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 1.28e-64
Identity = 139/292 (47.60%), Postives = 144/292 (49.32%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           S LLTGSLDETVKLWKSDELDL+RTNTGHCLGVVSV A PSG++AASASLDSFVRVFEV 
Sbjct: 31  SLLLTGSLDETVKLWKSDELDLERTNTGHCLGVVSVAAHPSGFIAASASLDSFVRVFEVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           SNSTIATLEAPPSEVWQMRFNPE                                     
Sbjct: 91  SNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKLWDTNTWKLAATLSIPRPEGPK 150

Query: 128 ------------------------CG---------------------------------- 168
                                   CG                                  
Sbjct: 151 PTDKTASKKFVLSVAWSIDGRRLACGSMDGTISIFDVARAKFLHHLEGHFMPVRSLVYSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. ExPASy TrEMBL
Match: A0A6J1JBB4 (WD repeat-containing protein VIP3 OS=Cucurbita maxima OX=3661 GN=LOC111485231 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 2.50e-64
Identity = 140/292 (47.95%), Postives = 145/292 (49.66%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           S L+TGSLDETVKLWKSDELDLDRTNTGHCLGVVSV A PSGY+AASASLDSFVR+FEV 
Sbjct: 31  SLLVTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVAAHPSGYIAASASLDSFVRIFEVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           SNSTIATLEAPPSEVWQMRFNPE                                     
Sbjct: 91  SNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKIWDTSTWKLAATLSIPRPEGPK 150

Query: 128 ------------------------CG---------------------------------- 168
                                   CG                                  
Sbjct: 151 PTDKTASKKFVLSVAWSVDGRRLACGSMDGTISVFDVARAKFLHHLEGHFMPVRSLVYSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. ExPASy TrEMBL
Match: A0A6J1HCE5 (WD repeat-containing protein VIP3 OS=Cucurbita moschata OX=3662 GN=LOC111461552 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 2.50e-64
Identity = 140/292 (47.95%), Postives = 145/292 (49.66%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           S L+TGSLDETVKLWKSDELDLDRTNTGHCLGVVSV A PSGY+AASASLDSFVR+FEV 
Sbjct: 31  SLLVTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVAAHPSGYIAASASLDSFVRIFEVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           SNSTIATLEAPPSEVWQMRFNPE                                     
Sbjct: 91  SNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKIWDTSTWKLAATLSIPRPEGPK 150

Query: 128 ------------------------CG---------------------------------- 168
                                   CG                                  
Sbjct: 151 PTDKTASKKFVLSVAWSVDGRRLACGSMDGTISVFDVARAKFLHHLEGHFMPVRSLVYSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. TAIR 10
Match: AT4G29830.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 178.3 bits (451), Expect = 5.1e-45
Identity = 120/292 (41.10%), Postives = 136/292 (46.58%), Query Frame = 0


Query: 8   SFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVG 67
           + LLTGSLDETVKLW+ DELDL RTNTGH LGV ++ A PSG +AAS+S+DSFVRVF+V 
Sbjct: 31  ALLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHPSGIIAASSSIDSFVRVFDVD 90

Query: 68  SNSTIATLEAPPSEVWQMRFNPE------------------------------------- 127
           +N+TIA LEAPPSEVW M+F P+                                     
Sbjct: 91  TNATIAVLEAPPSEVWGMQFEPKGTILAVAGGSSASVKLWDTASWRLISTLSIPRPDAPK 150

Query: 128 ------------------------CG---------------------------------- 169
                                   CG                                  
Sbjct: 151 PSDKTSSKKFVLSVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSP 210

[Close]

BLAST of Cp4.1LG04g10960 vs. TAIR 10
Match: AT1G11160.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 41/144 (28.47%), Postives = 69/144 (47.92%), Query Frame = 0


Query: 9   FLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVGS 68
           FL +GS D  +++W + +    +T  GH  G+ ++   P G    S  LD+ V+V+++ +
Sbjct: 114 FLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTA 173

Query: 69  NSTIATLEAPPSEVWQMRFNPECGVLSVDASPDGALATGSSDRTVMLWDLKTREAVQTMI 128
              +   +     +  + F+P           +  LATGS+DRTV  WDL+T E + T  
Sbjct: 174 GKLLHEFKCHEGPIRSLDFHP----------LEFLLATGSADRTVKFWDLETFELIGTTR 233

Query: 129 KHSDQVCWGVVAFRPHDGAGVEAG 153
             +  V    +AF P DG  +  G
Sbjct: 234 PEATGV--RAIAFHP-DGQTLFCG 244

[Close]

BLAST of Cp4.1LG04g10960 vs. TAIR 10
Match: AT5G08390.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-10
Identity = 44/163 (26.99%), Postives = 73/163 (44.79%), Query Frame = 0


Query: 6   ASSFLLTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFE 65
           +   +  G+   T+KLW  +E  + RT TGH    VSV   P G   AS SLD+ +++++
Sbjct: 70  SEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWD 129

Query: 66  VGSNSTIATLEAPPSEVWQMRFNPECGVLSVDASPDGA-LATGSSDRTVMLWDLKTREAV 125
           +     I T +     V  +RF           +PDG  + +G  D  V +WDL   + +
Sbjct: 130 IRKKGCIHTYKGHTRGVNVLRF-----------TPDGRWIVSGGEDNVVKVWDLTAGKLL 189

Query: 126 QTMIKHSDQVCWGVVAFRPHDGAGVEAGRHASVSDDKSISLYD 168
                H  ++    + F PH+         A+ S DK++  +D
Sbjct: 190 HEFKSHEGKI--QSLDFHPHEFL------LATGSADKTVKFWD 213

[Close]

BLAST of Cp4.1LG04g10960 vs. TAIR 10
Match: AT5G23430.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-10
Identity = 39/134 (29.10%), Postives = 62/134 (46.27%), Query Frame = 0


Query: 13  GSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVGSNSTI 72
           G+   T+KLW  +E  + RT TGH    +SV   P G   AS SLD+ ++++++     I
Sbjct: 77  GAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI 136

Query: 73  ATLEAPPSEVWQMRFNPECGVLSVDASPDGA-LATGSSDRTVMLWDLKTREAVQTMIKHS 132
            T +     V  +RF           +PDG  + +G  D  V +WDL   + +     H 
Sbjct: 137 HTYKGHTRGVNVLRF-----------TPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHE 196

Query: 133 DQVCWGVVAFRPHD 146
            Q+    + F PH+
Sbjct: 197 GQI--QSLDFHPHE 197

[Close]

BLAST of Cp4.1LG04g10960 vs. TAIR 10
Match: AT5G23430.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-10
Identity = 39/134 (29.10%), Postives = 62/134 (46.27%), Query Frame = 0


Query: 13  GSLDETVKLWKSDELDLDRTNTGHCLGVVSVVARPSGYVAASASLDSFVRVFEVGSNSTI 72
           G+   T+KLW  +E  + RT TGH    +SV   P G   AS SLD+ ++++++     I
Sbjct: 77  GAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI 136

Query: 73  ATLEAPPSEVWQMRFNPECGVLSVDASPDGA-LATGSSDRTVMLWDLKTREAVQTMIKHS 132
            T +     V  +RF           +PDG  + +G  D  V +WDL   + +     H 
Sbjct: 137 HTYKGHTRGVNVLRF-----------TPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHE 196

Query: 133 DQVCWGVVAFRPHD 146
            Q+    + F PH+
Sbjct: 197 GQI--QSLDFHPHE 197

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g10960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZQ5	7.1e-44	41.10	WD repeat-containing protein VIP3 OS=Arabidopsis thaliana OX=3702 GN=VIP3 PE=1 S...	[more]
Q6PBD6	2.2e-16	32.82	WD repeat-containing protein 61 OS=Xenopus tropicalis OX=8364 GN=wdr61 PE=2 SV=1	[more]
Q5ZJH5	1.1e-15	31.28	WD repeat-containing protein 61 OS=Gallus gallus OX=9031 GN=WDR61 PE=2 SV=1	[more]
Q6P5M2	1.1e-15	32.82	WD repeat-containing protein 61 OS=Danio rerio OX=7955 GN=wdr61 PE=2 SV=1	[more]
Q6GMD2	9.1e-15	33.33	WD repeat-containing protein 61 OS=Xenopus laevis OX=8355 GN=wdr61 PE=2 SV=1	[more]

BLAST of Cp4.1LG04g10960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588060.1	2.03e-106	81.41	WD repeat-containing protein VIP3, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004144016.1	2.65e-64	47.60	WD repeat-containing protein VIP3 [Cucumis sativus]	[more]
XP_008450896.1	2.65e-64	47.60	PREDICTED: WD repeat-containing protein VIP3 [Cucumis melo] >KAA0055801.1 WD rep...	[more]
XP_022987787.1	5.16e-64	47.95	WD repeat-containing protein VIP3 [Cucurbita maxima] >XP_023515877.1 WD repeat-c...	[more]
XP_022960889.1	5.16e-64	47.95	WD repeat-containing protein VIP3 [Cucurbita moschata] >KAG7023680.1 WD repeat-c...	[more]

BLAST of Cp4.1LG04g10960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFF6	1.28e-64	47.60	WD repeat-containing protein VIP3 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0LWK2	1.28e-64	47.60	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A1S3BQZ8	1.28e-64	47.60	WD repeat-containing protein VIP3 OS=Cucumis melo OX=3656 GN=LOC103492347 PE=4 S...	[more]
A0A6J1JBB4	2.50e-64	47.95	WD repeat-containing protein VIP3 OS=Cucurbita maxima OX=3661 GN=LOC111485231 PE...	[more]
A0A6J1HCE5	2.50e-64	47.95	WD repeat-containing protein VIP3 OS=Cucurbita moschata OX=3662 GN=LOC111461552 ...	[more]

BLAST of Cp4.1LG04g10960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29830.1	5.1e-45	41.10	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G11160.1	1.8e-10	28.47	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G08390.1	3.1e-10	26.99	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G23430.1	6.9e-10	29.10	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G23430.2	6.9e-10	29.10	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 154..168 score: 28.44 coord: 10..24 score: 36.69 coord: 104..118 score: 45.75
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 68..117 e-value: 4.0E-4 score: 29.7 coord: 120..167 e-value: 230.0 score: 2.1 coord: 26..65 e-value: 0.37 score: 19.8
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 92..117 e-value: 6.8E-5 score: 23.6
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 33..74 score: 8.503359
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 93..126 score: 11.510997
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 6..91 e-value: 8.2E-14 score: 53.5
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 92..168 e-value: 2.5E-14 score: 55.0
None	No IPR available	PANTHER	PTHR44090:SF3	WD REPEAT-CONTAINING PROTEIN VIP3-LIKE	coord: 8..93
None	No IPR available	PANTHER	PTHR44090:SF3	WD REPEAT-CONTAINING PROTEIN VIP3-LIKE	coord: 93..168
None	No IPR available	PANTHER	PTHR44090	WD REPEAT-CONTAINING PROTEIN 61	coord: 8..93 coord: 93..168
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 104..118
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 8..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g10960.1	Cp4.1LG04g10960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding