Cp4.1LG04g10880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g10880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Photosystem II PsbX
Location	Cp4.1LG04: 9152405 .. 9152761 (-)
RNA-Seq Expression	Cp4.1LG04g10880
Synteny	Cp4.1LG04g10880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGCTCCCGCCGTTTCAATGGCTCTCCCCTTGCCCTACGCCAGCCAGAAGCGGCTCTCCAACGACGCCTTCTTCAATCCATTGCCTTCTAGGTCTCGCAAGGCCATCCCCGCCGCTCCAAGGCTCGTTGTCGTCCACTCGTCTTTGAAGGAGAAAGCCGTCACTGGACTTACGGCCGCTGCGCTGTCTGCAGCGATGGTGATTCCTGAGGTTGCAGAGGCTGCCGGTCCTGGAGTGTCGCCATCGCTCAAGAACTTCTTGCTGAGCATTGCCGCTGGTGGAGTTGTGGTGATCGCCATACTTGGAGCTGTCATCGGCGTCTCGAACTTCGATCCGGTGAAGCGTGGCTGA

mRNA sequence

ATGGCTTCCGCTCCCGCCGTTTCAATGGCTCTCCCCTTGCCCTACGCCAGCCAGAAGCGGCTCTCCAACGACGCCTTCTTCAATCCATTGCCTTCTAGGTCTCGCAAGGCCATCCCCGCCGCTCCAAGGCTCGTTGTCGTCCACTCGTCTTTGAAGGAGAAAGCCGTCACTGGACTTACGGCCGCTGCGCTGTCTGCAGCGATGGTGATTCCTGAGGTTGCAGAGGCTGCCGGTCCTGGAGTGTCGCCATCGCTCAAGAACTTCTTGCTGAGCATTGCCGCTGGTGGAGTTGTGGTGATCGCCATACTTGGAGCTGTCATCGGCGTCTCGAACTTCGATCCGGTGAAGCGTGGCTGA

Coding sequence (CDS)

ATGGCTTCCGCTCCCGCCGTTTCAATGGCTCTCCCCTTGCCCTACGCCAGCCAGAAGCGGCTCTCCAACGACGCCTTCTTCAATCCATTGCCTTCTAGGTCTCGCAAGGCCATCCCCGCCGCTCCAAGGCTCGTTGTCGTCCACTCGTCTTTGAAGGAGAAAGCCGTCACTGGACTTACGGCCGCTGCGCTGTCTGCAGCGATGGTGATTCCTGAGGTTGCAGAGGCTGCCGGTCCTGGAGTGTCGCCATCGCTCAAGAACTTCTTGCTGAGCATTGCCGCTGGTGGAGTTGTGGTGATCGCCATACTTGGAGCTGTCATCGGCGTCTCGAACTTCGATCCGGTGAAGCGTGGCTGA

Protein sequence

MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG

Homology

[Close]

BLAST of Cp4.1LG04g10880 vs. NCBI nr
Match: XP_022934016.1 (uncharacterized protein LOC111441248 [Cucurbita moschata] >XP_023529357.1 uncharacterized protein LOC111792236 [Cucurbita pepo subsp. pepo] >KAG6588066.1 hypothetical protein SDJN03_16631, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214 bits (546), Expect = 8.60e-70
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT 60
           MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT
Sbjct: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT 60

Query: 61  AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG 118
           AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG
Sbjct: 61  AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG 118

[Close]

BLAST of Cp4.1LG04g10880 vs. NCBI nr
Match: XP_022968571.1 (uncharacterized protein LOC111467755 [Cucurbita maxima])

HSP 1 Score: 211 bits (538), Expect = 1.43e-68
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT 60
           MASAPAVSMALPL YASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT
Sbjct: 1   MASAPAVSMALPLTYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT 60

Query: 61  AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG 118
           AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG
Sbjct: 61  AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG 118

[Close]

BLAST of Cp4.1LG04g10880 vs. NCBI nr
Match: XP_022960741.1 (uncharacterized protein LOC111461452 [Cucurbita moschata])

HSP 1 Score: 171 bits (433), Expect = 1.87e-52
Identity = 101/126 (80.16%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLK 60
           MAS   VS+ALPL  A+ KRLSN AFFNPLP    SRSRKAI AAP    RLV V SSLK
Sbjct: 1   MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLK 60

Query: 61  EKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNF 118
           EKA+TGLTAAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV+AILGAVIGVSNF
Sbjct: 61  EKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 120

[Close]

BLAST of Cp4.1LG04g10880 vs. NCBI nr
Match: XP_038878912.1 (uncharacterized protein LOC120071001 [Benincasa hispida])

HSP 1 Score: 169 bits (429), Expect = 6.92e-52
Identity = 98/122 (80.33%), Postives = 107/122 (87.70%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLPS-RSRKAIPAAP----RLVVVHSSLKEKA 60
           MAS  A+SMALPL YA+ K LSNDAFFNPLPS +SRKAI AAP    R+V V SSLKEKA
Sbjct: 1   MASTSALSMALPLTYATHKPLSNDAFFNPLPSFKSRKAIAAAPKSNGRIVAVRSSLKEKA 60

Query: 61  VTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPV 117
           V G+TAAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV+AILGAVIGV+NFDPV
Sbjct: 61  VAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVANFDPV 120

[Close]

BLAST of Cp4.1LG04g10880 vs. NCBI nr
Match: XP_022987287.1 (uncharacterized protein LOC111484883 [Cucurbita maxima])

HSP 1 Score: 166 bits (419), Expect = 2.54e-50
Identity = 98/126 (77.78%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLK 60
           MAS   VS+ALPL  A+ KRLSN AFFNPLP    SR RKAI AAP    RLV V SSLK
Sbjct: 1   MASTSRVSLALPLTTATHKRLSNHAFFNPLPASPSSRYRKAIAAAPTSNGRLVAVRSSLK 60

Query: 61  EKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNF 118
           EKA+TG++AAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV+AILGAVIGVSNF
Sbjct: 61  EKAITGVSAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 120

[Close]

BLAST of Cp4.1LG04g10880 vs. ExPASy TrEMBL
Match: A0A6J1F0M8 (uncharacterized protein LOC111441248 OS=Cucurbita moschata OX=3662 GN=LOC111441248 PE=4 SV=1)

HSP 1 Score: 214 bits (546), Expect = 4.16e-70
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT 60
           MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT
Sbjct: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT 60

Query: 61  AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG 118
           AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG
Sbjct: 61  AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG 118

[Close]

BLAST of Cp4.1LG04g10880 vs. ExPASy TrEMBL
Match: A0A6J1HV97 (uncharacterized protein LOC111467755 OS=Cucurbita maxima OX=3661 GN=LOC111467755 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 6.91e-69
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT 60
           MASAPAVSMALPL YASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT
Sbjct: 1   MASAPAVSMALPLTYASQKRLSNDAFFNPLPSRSRKAIPAAPRLVVVHSSLKEKAVTGLT 60

Query: 61  AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG 118
           AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG
Sbjct: 61  AAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPVKRG 118

[Close]

BLAST of Cp4.1LG04g10880 vs. ExPASy TrEMBL
Match: A0A6J1H8G2 (uncharacterized protein LOC111461452 OS=Cucurbita moschata OX=3662 GN=LOC111461452 PE=4 SV=1)

HSP 1 Score: 171 bits (433), Expect = 9.05e-53
Identity = 101/126 (80.16%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLK 60
           MAS   VS+ALPL  A+ KRLSN AFFNPLP    SRSRKAI AAP    RLV V SSLK
Sbjct: 1   MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLK 60

Query: 61  EKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNF 118
           EKA+TGLTAAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV+AILGAVIGVSNF
Sbjct: 61  EKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 120

[Close]

BLAST of Cp4.1LG04g10880 vs. ExPASy TrEMBL
Match: A0A6J1J9Y5 (uncharacterized protein LOC111484883 OS=Cucurbita maxima OX=3661 GN=LOC111484883 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 1.23e-50
Identity = 98/126 (77.78%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLP----SRSRKAIPAAP----RLVVVHSSLK 60
           MAS   VS+ALPL  A+ KRLSN AFFNPLP    SR RKAI AAP    RLV V SSLK
Sbjct: 1   MASTSRVSLALPLTTATHKRLSNHAFFNPLPASPSSRYRKAIAAAPTSNGRLVAVRSSLK 60

Query: 61  EKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNF 118
           EKA+TG++AAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV+AILGAVIGVSNF
Sbjct: 61  EKAITGVSAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 120

[Close]

BLAST of Cp4.1LG04g10880 vs. ExPASy TrEMBL
Match: A0A1S3BRD2 (uncharacterized protein LOC103492356 OS=Cucumis melo OX=3656 GN=LOC103492356 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 1.07e-48
Identity = 94/122 (77.05%), Postives = 103/122 (84.43%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLPS-RSRKAIPAAP----RLVVVHSSLKEKA 60
           MAS  AVSMALP  +A+ K LSNDAFFNPLPS +SRK I AAP    R+V V SSLKEKA
Sbjct: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60

Query: 61  VTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPV 117
           V G+TAAAL+A+MVIPEVAEAAG GVSPSLKNFLLSIAAGG VV+AI GAVIGV+NFDPV
Sbjct: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120

[Close]

BLAST of Cp4.1LG04g10880 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-23
Identity = 71/122 (58.20%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 1   MASAPAVSMALPLPYASQKRLSNDAFFNPLPSRSRKAIPA----APRLVVVHSSLK-EKA 60
           MAS  A+S+  PL   +Q R S   F  PLP +  KA+ A    A RL V   +LK +KA
Sbjct: 1   MASTSAMSLVTPL---NQTRSS--PFLKPLPLKPSKALVATGGRAQRLQV--KALKMDKA 60

Query: 61  VTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPV 118
           +TG++AAAL+A+MVIPE+AEAAG G+SPSLKNFLLSIA+GG+V+  I+G V+GVSNFDPV
Sbjct: 61  LTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPV 115

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g10880 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g10880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934016.1	8.60e-70	100.00	uncharacterized protein LOC111441248 [Cucurbita moschata] >XP_023529357.1 unchar...	[more]
XP_022968571.1	1.43e-68	99.15	uncharacterized protein LOC111467755 [Cucurbita maxima]	[more]
XP_022960741.1	1.87e-52	80.16	uncharacterized protein LOC111461452 [Cucurbita moschata]	[more]
XP_038878912.1	6.92e-52	80.33	uncharacterized protein LOC120071001 [Benincasa hispida]	[more]
XP_022987287.1	2.54e-50	77.78	uncharacterized protein LOC111484883 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG04g10880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0M8	4.16e-70	100.00	uncharacterized protein LOC111441248 OS=Cucurbita moschata OX=3662 GN=LOC1114412...	[more]
A0A6J1HV97	6.91e-69	99.15	uncharacterized protein LOC111467755 OS=Cucurbita maxima OX=3661 GN=LOC111467755...	[more]
A0A6J1H8G2	9.05e-53	80.16	uncharacterized protein LOC111461452 OS=Cucurbita moschata OX=3662 GN=LOC1114614...	[more]
A0A6J1J9Y5	1.23e-50	77.78	uncharacterized protein LOC111484883 OS=Cucurbita maxima OX=3661 GN=LOC111484883...	[more]
A0A1S3BRD2	1.07e-48	77.05	uncharacterized protein LOC103492356 OS=Cucumis melo OX=3656 GN=LOC103492356 PE=...	[more]

BLAST of Cp4.1LG04g10880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	2.2e-23	58.20	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 80..118 e-value: 1.8E-11 score: 45.6
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..117
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..117
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 81..117 e-value: 3.5E-17 score: 62.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g10880.1	Cp4.1LG04g10880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane