Cp4.1LG04g10580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g10580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor MYB36-like
Location	Cp4.1LG04: 9429326 .. 9430583 (+)
RNA-Seq Expression	Cp4.1LG04g10580
Synteny	Cp4.1LG04g10580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCCTCTCTCTCTCTAAACTCGTCTCCTTCTCCATGGGAAGAGCTCCTTGCTGTGACAAAGCCACCGTCAAGAGAGGCCCATGGTCTCCTCAAGAAGACGCCACTCTCAAAGCCTTCATTCATAAACATGGCACTGCTGGCAACTGGATCGCTCTCCCTCGCAAAGCTGGTTTTTTTTTCCTCTTCTTTTTCTCTTCGTCTTACACAAGTTTGTTATTGTTTAACCCGTCCCCCTGCCTGTTTCGTGTTTCTCCGCCGTAGGACTTAACCGCTGCGGCAAGAGCTGTCGTCTCAGGTGGCTGAATTATCTCCGTCCAGACATCAAACACGGCGGCTTTACCCTCGAGGAAGACAACCTTATTTGTACCCTTTATTCCACTCTCGGAAGCAGGCAAGTGAAAATAGAGTATTCTTTATTTATTTGAATTAAATTTGATTTATTTATTCTAGATTTATTTGTTTGTAATGTATTGCGTAAATCTATATAATAGTCAATTTCATTGGGGAGACCTCTATCATAACATTTATAAGAATATGAGACCGATAATATCTGTATAGAGACAGACAATATCTACAAACAGATAGAAACAGACAGATAGAGAGACAATATCTGCATGTAAACATATAGAGACATATCTTTTAACGGACACTTATGTCTCATCAATATAATTAAATTTAATGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTAGGTGGGCTGTTATTGCATCACAATTACCGGGGAGAACAGATAACGATGTAAAAAACCACTGGAATACGAAGCTGAAGAAGAAATTCAATTCATTTTCCGAACGGCCAACTCCGACAATCGCCGCCGCAACCCAGCAGAATGCGATTACCAACATGGCATTTCCAGCCAACGCGCCGCCGTATTCCGCCGCTGCAGATTGGTTAAGATTGGATGAACAAATGGACGGAAACTTGATGTTTGCAGATACTAATTTTGATTTCAAGCACGACCCAGAAGATCAATTCCCGATGTTGTGGAATCCACAAGAGTTATCCACTTCCTCATCTAATTCGTCGCTACCCATAGAGCAAAACCAGCTCCCATTTGGTGGGAACGCCGGCGAAGCTCTACTGAGTTATGGATTTTATCAATACCCATATGGAGATGTAATGGAAGGATTGGATTTC

mRNA sequence

ATGGCGGCCCTCTCTCTCTCTAAACTCGTCTCCTTCTCCATGGGAAGAGCTCCTTGCTGTGACAAAGCCACCGTCAAGAGAGGCCCATGGTCTCCTCAAGAAGACGCCACTCTCAAAGCCTTCATTCATAAACATGGCACTGCTGGCAACTGGATCGCTCTCCCTCGCAAAGCTGGTTTTTTTTTCCTCTTCTTTTTCTCTTCGTGGGCTGTTATTGCATCACAATTACCGGGGAGAACAGATAACGATGTAAAAAACCACTGGAATACGAAGCTGAAGAAGAAATTCAATTCATTTTCCGAACGGCCAACTCCGACAATCGCCGCCGCAACCCAGCAGAATGCGATTACCAACATGGCATTTCCAGCCAACGCGCCGCCGTATTCCGCCGCTGCAGATTGGTTAAGATTGGATGAACAAATGGACGGAAACTTGATGTTTGCAGATACTAATTTTGATTTCAAGCACGACCCAGAAGATCAATTCCCGATGTTGTGGAATCCACAAGAGTTATCCACTTCCTCATCTAATTCGTCGCTACCCATAGAGCAAAACCAGCTCCCATTTGGTGGGAACGCCGGCGAAGCTCTACTGAGTTATGGATTTTATCAATACCCATATGGAGATGTAATGGAAGGATTGGATTTC

Coding sequence (CDS)

ATGGCGGCCCTCTCTCTCTCTAAACTCGTCTCCTTCTCCATGGGAAGAGCTCCTTGCTGTGACAAAGCCACCGTCAAGAGAGGCCCATGGTCTCCTCAAGAAGACGCCACTCTCAAAGCCTTCATTCATAAACATGGCACTGCTGGCAACTGGATCGCTCTCCCTCGCAAAGCTGGTTTTTTTTTCCTCTTCTTTTTCTCTTCGTGGGCTGTTATTGCATCACAATTACCGGGGAGAACAGATAACGATGTAAAAAACCACTGGAATACGAAGCTGAAGAAGAAATTCAATTCATTTTCCGAACGGCCAACTCCGACAATCGCCGCCGCAACCCAGCAGAATGCGATTACCAACATGGCATTTCCAGCCAACGCGCCGCCGTATTCCGCCGCTGCAGATTGGTTAAGATTGGATGAACAAATGGACGGAAACTTGATGTTTGCAGATACTAATTTTGATTTCAAGCACGACCCAGAAGATCAATTCCCGATGTTGTGGAATCCACAAGAGTTATCCACTTCCTCATCTAATTCGTCGCTACCCATAGAGCAAAACCAGCTCCCATTTGGTGGGAACGCCGGCGAAGCTCTACTGAGTTATGGATTTTATCAATACCCATATGGAGATGTAATGGAAGGATTGGATTTC

Protein sequence

MAALSLSKLVSFSMGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGFFFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSFSERPTPTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFDFKHDPEDQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLDF

Homology

[Close]

BLAST of Cp4.1LG04g10580 vs. ExPASy Swiss-Prot
Match: Q9FKL2 (Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.3e-26
Identity = 76/215 (35.35%), Postives = 111/215 (51.63%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKA VK+GPWSP+ED  LK +I K+GT GNWIALP+K G              
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 133
                                 ++   S W++IA+QLPGRTDND+KN+WNTKLKKK    
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 134 SERPT--PTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFDFKHD 193
            ++     +I  +T+ N   N    +     ++A + L+L  Q+  NL    ++F   ++
Sbjct: 121 QKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQ-NLQSPFSSF---YN 180

[Close]

BLAST of Cp4.1LG04g10580 vs. ExPASy Swiss-Prot
Match: Q9M2Y9 (Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.6e-26
Identity = 57/116 (49.14%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKA VK+GPWSP+EDA LK++I   GT GNWIALP+K G              
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKK 96
                                 +L   S W++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

[Close]

BLAST of Cp4.1LG04g10580 vs. ExPASy Swiss-Prot
Match: F4JSU0 (Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-25
Identity = 55/119 (46.22%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDK  VK+GPWS +EDA LK++I KHGT  NWI+LP++ G              
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNS 99
                                 ++   S W++IASQLPGRTDND+KN+WNT+LKKK  S
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLS 119

[Close]

BLAST of Cp4.1LG04g10580 vs. ExPASy Swiss-Prot
Match: Q9FG68 (Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-24
Identity = 58/138 (42.03%), Postives = 74/138 (53.62%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDK  VKRGPWSP+ED+ L+ +I K+G  GNWI+ P KAG              
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 118
                                 F    S W++IA+ LPGRTDND+KN+WNTKL+KK  S 
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSS 120

[Close]

BLAST of Cp4.1LG04g10580 vs. ExPASy Swiss-Prot
Match: B3VTV7 (Transcription factor MYB60 OS=Vitis vinifera OX=29760 GN=MYB60 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-19
Identity = 51/142 (35.92%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGR PCCDK  +K+GPW+P+ED  L ++I +HG  GNW ++P   G              
Sbjct: 1   MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHG-PGNWRSVPTNTGLLRCSKSCRLRWTN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 122
                                      + WA IAS LP RTDND+KN+WNT LKKK   F
Sbjct: 61  YLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKIKKF 120

[Close]

BLAST of Cp4.1LG04g10580 vs. NCBI nr
Match: XP_023530624.1 (transcription factor MYB36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412 bits (1059), Expect = 1.01e-143
Identity = 208/250 (83.20%), Postives = 209/250 (83.60%), Query Frame = 0


Query: 1   MAALSLSKLVSFSMGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF 60
           MAALSLSKLVSFSMGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAG 
Sbjct: 36  MAALSLSKLVSFSMGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGL 95

Query: 61  ----------------------------------FFLFFFSSWAVIASQLPGRTDNDVKN 120
                                              +    S WAVIASQLPGRTDNDVKN
Sbjct: 96  NRCGKSCRLRWLNYLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKN 155

Query: 121 HWNTKLKKKFNSFSERPTPTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLM 180
           HWNTKLKKKFNSFSERPTPTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLM
Sbjct: 156 HWNTKLKKKFNSFSERPTPTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLM 215

Query: 181 FADTNFDFKHDPEDQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYP 216
           FADTNFDFKHDPEDQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYP
Sbjct: 216 FADTNFDFKHDPEDQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYP 275

[Close]

BLAST of Cp4.1LG04g10580 vs. NCBI nr
Match: XP_022933833.1 (transcription factor MYB36-like [Cucurbita moschata])

HSP 1 Score: 386 bits (992), Expect = 2.96e-134
Identity = 192/237 (81.01%), Postives = 194/237 (81.86%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAG              
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 133
                                 +    S WAVIASQLPGRTDNDVKNHWNTKLKKKFNSF
Sbjct: 61  YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 120

Query: 134 SERPTPTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFDFKHDPE 193
           SERP PTIAAATQQNAITNMAFPANAPPYSAAADW+RLDEQMDGNLMFAD NFDFKHDPE
Sbjct: 121 SERPAPTIAAATQQNAITNMAFPANAPPYSAAADWIRLDEQMDGNLMFADANFDFKHDPE 180

Query: 194 DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLDF 216
           DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLDF
Sbjct: 181 DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLDF 237

[Close]

BLAST of Cp4.1LG04g10580 vs. NCBI nr
Match: KAG6588016.1 (Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 383 bits (984), Expect = 3.15e-130
Identity = 190/237 (80.17%), Postives = 194/237 (81.86%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAG              
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 133
                                 +    S WAVIASQLPGRTDNDVKNHWNTKLKKKFNSF
Sbjct: 61  YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 120

Query: 134 SERPTPTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFDFKHDPE 193
           SERP PT+AAATQQNAITNMAFPANAPPYSAAADW+RLDEQMDGNLMFAD NFDFKHDPE
Sbjct: 121 SERPAPTMAAATQQNAITNMAFPANAPPYSAAADWIRLDEQMDGNLMFADANFDFKHDPE 180

Query: 194 DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLDF 216
           DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGL+F
Sbjct: 181 DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLNF 237

[Close]

BLAST of Cp4.1LG04g10580 vs. NCBI nr
Match: XP_023005467.1 (transcription factor RAX3-like [Cucurbita maxima])

HSP 1 Score: 374 bits (961), Expect = 1.56e-129
Identity = 185/237 (78.06%), Postives = 189/237 (79.75%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAG              
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 133
                                 +    S WAVIASQLPGRTDNDVKNHWNTKLKKKFNSF
Sbjct: 61  YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 120

Query: 134 SERPTPTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFDFKHDPE 193
           SER  PTIAA TQQNAITNMAFPANAPPYSAAADWLR DEQMDGNLMFAD NFDFKHDPE
Sbjct: 121 SERSAPTIAAVTQQNAITNMAFPANAPPYSAAADWLRFDEQMDGNLMFADANFDFKHDPE 180

Query: 194 DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLDF 216
           DQFPMLWNPQELSTSSSNSSLP+EQNQ+PFGGN GE +LSYGFYQYPYGDVMEGLDF
Sbjct: 181 DQFPMLWNPQELSTSSSNSSLPVEQNQVPFGGNDGETVLSYGFYQYPYGDVMEGLDF 237

[Close]

BLAST of Cp4.1LG04g10580 vs. NCBI nr
Match: KAG7021913.1 (Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367 bits (941), Expect = 3.18e-127
Identity = 176/190 (92.63%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGFF-----FLFFFSS 73
           MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGFF     FLF    
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGFFCFPLLFLFVLHK 60

Query: 74  WAVIASQLPGRTDNDVKNHWNTKLKKKFNSFSERPTPTIAAATQQNAITNMAFPANAPPY 133
           WAVIASQLPGRTDNDVKNHWNTKLKKKFNSFSERP+PT+AAATQQNAITNMAFPAN PPY
Sbjct: 61  WAVIASQLPGRTDNDVKNHWNTKLKKKFNSFSERPSPTMAAATQQNAITNMAFPANEPPY 120

Query: 134 SAAADWLRLDEQMDGNLMFADTNFDFKHDPEDQFPMLWNPQELSTSSSNSSLPIEQNQLP 193
           SAAADW+RLDEQMDGNLMFAD NFDFKHDPEDQFPMLWNPQELSTSSSNSSLPIEQNQLP
Sbjct: 121 SAAADWIRLDEQMDGNLMFADANFDFKHDPEDQFPMLWNPQELSTSSSNSSLPIEQNQLP 180

Query: 194 FGGNAGEALL 198
           FGGNAGEALL
Sbjct: 181 FGGNAGEALL 190

[Close]

BLAST of Cp4.1LG04g10580 vs. ExPASy TrEMBL
Match: A0A6J1F5Y4 (transcription factor MYB36-like OS=Cucurbita moschata OX=3662 GN=LOC111441129 PE=4 SV=1)

HSP 1 Score: 386 bits (992), Expect = 1.43e-134
Identity = 192/237 (81.01%), Postives = 194/237 (81.86%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAG              
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 133
                                 +    S WAVIASQLPGRTDNDVKNHWNTKLKKKFNSF
Sbjct: 61  YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 120

Query: 134 SERPTPTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFDFKHDPE 193
           SERP PTIAAATQQNAITNMAFPANAPPYSAAADW+RLDEQMDGNLMFAD NFDFKHDPE
Sbjct: 121 SERPAPTIAAATQQNAITNMAFPANAPPYSAAADWIRLDEQMDGNLMFADANFDFKHDPE 180

Query: 194 DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLDF 216
           DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLDF
Sbjct: 181 DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLDF 237

[Close]

BLAST of Cp4.1LG04g10580 vs. ExPASy TrEMBL
Match: A0A6J1KT76 (transcription factor RAX3-like OS=Cucurbita maxima OX=3661 GN=LOC111498442 PE=4 SV=1)

HSP 1 Score: 374 bits (961), Expect = 7.57e-130
Identity = 185/237 (78.06%), Postives = 189/237 (79.75%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAG              
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 133
                                 +    S WAVIASQLPGRTDNDVKNHWNTKLKKKFNSF
Sbjct: 61  YLRPDIKHGGFTLEEDNLICTLYSTLGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 120

Query: 134 SERPTPTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFDFKHDPE 193
           SER  PTIAA TQQNAITNMAFPANAPPYSAAADWLR DEQMDGNLMFAD NFDFKHDPE
Sbjct: 121 SERSAPTIAAVTQQNAITNMAFPANAPPYSAAADWLRFDEQMDGNLMFADANFDFKHDPE 180

Query: 194 DQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAGEALLSYGFYQYPYGDVMEGLDF 216
           DQFPMLWNPQELSTSSSNSSLP+EQNQ+PFGGN GE +LSYGFYQYPYGDVMEGLDF
Sbjct: 181 DQFPMLWNPQELSTSSSNSSLPVEQNQVPFGGNDGETVLSYGFYQYPYGDVMEGLDF 237

[Close]

BLAST of Cp4.1LG04g10580 vs. ExPASy TrEMBL
Match: A0A6J1CVC2 (transcription factor RAX2-like OS=Momordica charantia OX=3673 GN=LOC111014545 PE=4 SV=1)

HSP 1 Score: 203 bits (517), Expect = 1.69e-62
Identity = 122/247 (49.39%), Postives = 137/247 (55.47%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKATVKRGPWSPQEDATLK +IHKHGT GNWIALPRKAG              
Sbjct: 1   MGRAPCCDKATVKRGPWSPQEDATLKNYIHKHGTGGNWIALPRKAGLNRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 133
                                 +    S WAVIASQLPGRTDNDVKNHWNTKLKKKFNS 
Sbjct: 61  YLRPDIKHGSFTEEEDSVICTLYSSIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSV 120

Query: 134 SERPTPTIAAAT------QQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFD 193
           SE P PT+AAA         NA T++ FPAN P +  A            N++F+     
Sbjct: 121 SETPNPTVAAAAAAAADGHHNATTDITFPANTPLFPNA------------NILFST---- 180

Query: 194 FKHDPEDQFPMLWNPQELSTSSSNSSLPIEQNQLPFGGNAG-----EALLSYGFYQYPYG 214
                    P+ ++PQE  T     +   EQ Q+PF GN G     E LLSYGFYQYPY 
Sbjct: 181 ---------PLNFDPQEFPTMDRFPTT--EQTQIPFSGNGGGSDDGEILLSYGFYQYPYE 220

[Close]

BLAST of Cp4.1LG04g10580 vs. ExPASy TrEMBL
Match: A0A0A0LZB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575180 PE=4 SV=1)

HSP 1 Score: 192 bits (489), Expect = 5.36e-58
Identity = 128/257 (49.81%), Postives = 143/257 (55.64%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKA+VKRGPWSPQEDATL AFIHKHGT GNWIALP KAG              
Sbjct: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNS- 133
                                 +    S WAVIASQLPGRTDNDVKNHWNTKLKKKFNS 
Sbjct: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120

Query: 134 FSERPTPTIAAATQQNAITNMAFPANAPPYSAA--ADWLRLDEQMDGNLMFADTNFDF-- 193
           FS+ P P +                + P YSA   A+ L+L +  + N+   +TNF+   
Sbjct: 121 FSKPPNPIVVVT-------------DPPRYSATSTANSLKLHDDHEHNI---NTNFNMFS 180

Query: 194 KHDPEDQFPMLWNPQ-----ELSTSSSNSSLPIEQNQLPFGG----NAGEALLSY--GFY 215
            H P DQ PML N       ELSTSSS+ SLPIEQN L F G     A + L SY  G Y
Sbjct: 181 SHPPFDQIPMLNNNNNPIIPELSTSSSSISLPIEQNHLEFSGPSSDEAADILQSYFHGVY 240

[Close]

BLAST of Cp4.1LG04g10580 vs. ExPASy TrEMBL
Match: A0A1S3BPH8 (transcription factor RAX2-like OS=Cucumis melo OX=3656 GN=LOC103492286 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 7.00e-48
Identity = 116/253 (45.85%), Postives = 131/253 (51.78%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKA+VKRGPWSPQEDATL AFIHKHGT GNWIALP KAG              
Sbjct: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFN-S 133
                                 +    S WA+IASQLPGRTDNDVKNHWNTKLKKKFN S
Sbjct: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAIIASQLPGRTDNDVKNHWNTKLKKKFNNS 120

Query: 134 FSERPTPTIAAATQQNAITNMAFPANAPPYSAA-ADWLRLDEQMDGNLMFADTNFDFKHD 193
            SE P  T+                    YS+  A+ L++      + +  + N    H 
Sbjct: 121 LSEPPNSTMIVTDPSR-------------YSSTTANSLKVLHNDHEHNINTNYNMFSSHP 180

Query: 194 PEDQFPMLWNPQ-----ELSTSSSNSSLP-IEQNQLPF----GGNAGEALLS------YG 213
             DQ PML N       ELSTSSS+ SLP IEQN L      G +  E +L       Y 
Sbjct: 181 RFDQIPMLNNNNNPIIPELSTSSSSISLPNIEQNHLEEFSGPGSDEAEIILQSYFHGVYD 240

[Close]

BLAST of Cp4.1LG04g10580 vs. TAIR 10
Match: AT5G57620.1 (myb domain protein 36 )

HSP 1 Score: 121.3 bits (303), Expect = 9.4e-28
Identity = 76/215 (35.35%), Postives = 111/215 (51.63%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKA VK+GPWSP+ED  LK +I K+GT GNWIALP+K G              
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 133
                                 ++   S W++IA+QLPGRTDND+KN+WNTKLKKK    
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 134 SERPT--PTIAAATQQNAITNMAFPANAPPYSAAADWLRLDEQMDGNLMFADTNFDFKHD 193
            ++     +I  +T+ N   N    +     ++A + L+L  Q+  NL    ++F   ++
Sbjct: 121 QKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQ-NLQSPFSSF---YN 180

[Close]

BLAST of Cp4.1LG04g10580 vs. TAIR 10
Match: AT3G49690.1 (myb domain protein 84 )

HSP 1 Score: 119.0 bits (297), Expect = 4.7e-27
Identity = 57/116 (49.14%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKA VK+GPWSP+EDA LK++I   GT GNWIALP+K G              
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKK 96
                                 +L   S W++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

[Close]

BLAST of Cp4.1LG04g10580 vs. TAIR 10
Match: AT5G65790.1 (myb domain protein 68 )

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-26
Identity = 56/116 (48.28%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDKA VK+GPWSP+EDA LK +I   GT GNWIALP+K G              
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKK 96
                                 ++   S W++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

[Close]

BLAST of Cp4.1LG04g10580 vs. TAIR 10
Match: AT4G37780.1 (myb domain protein 87 )

HSP 1 Score: 115.9 bits (289), Expect = 4.0e-26
Identity = 55/119 (46.22%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDK  VK+GPWS +EDA LK++I KHGT  NWI+LP++ G              
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNS 99
                                 ++   S W++IASQLPGRTDND+KN+WNT+LKKK  S
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLS 119

[Close]

BLAST of Cp4.1LG04g10580 vs. TAIR 10
Match: AT5G23000.1 (myb domain protein 37 )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 58/138 (42.03%), Postives = 74/138 (53.62%), Query Frame = 0


Query: 14  MGRAPCCDKATVKRGPWSPQEDATLKAFIHKHGTAGNWIALPRKAGF------------- 73
           MGRAPCCDK  VKRGPWSP+ED+ L+ +I K+G  GNWI+ P KAG              
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 74  ---------------------FFLFFFSSWAVIASQLPGRTDNDVKNHWNTKLKKKFNSF 118
                                 F    S W++IA+ LPGRTDND+KN+WNTKL+KK  S 
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSS 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g10580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKL2	1.3e-26	35.35	Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1	[more]
Q9M2Y9	6.6e-26	49.14	Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1	[more]
F4JSU0	5.6e-25	46.22	Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1	[more]
Q9FG68	1.6e-24	42.03	Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1	[more]
B3VTV7	2.0e-19	35.92	Transcription factor MYB60 OS=Vitis vinifera OX=29760 GN=MYB60 PE=2 SV=1	[more]

BLAST of Cp4.1LG04g10580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530624.1	1.01e-143	83.20	transcription factor MYB36-like [Cucurbita pepo subsp. pepo]	[more]
XP_022933833.1	2.96e-134	81.01	transcription factor MYB36-like [Cucurbita moschata]	[more]
KAG6588016.1	3.15e-130	80.17	Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023005467.1	1.56e-129	78.06	transcription factor RAX3-like [Cucurbita maxima]	[more]
KAG7021913.1	3.18e-127	92.63	Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG04g10580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5Y4	1.43e-134	81.01	transcription factor MYB36-like OS=Cucurbita moschata OX=3662 GN=LOC111441129 PE...	[more]
A0A6J1KT76	7.57e-130	78.06	transcription factor RAX3-like OS=Cucurbita maxima OX=3661 GN=LOC111498442 PE=4 ...	[more]
A0A6J1CVC2	1.69e-62	49.39	transcription factor RAX2-like OS=Momordica charantia OX=3673 GN=LOC111014545 PE...	[more]
A0A0A0LZB2	5.36e-58	49.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575180 PE=4 SV=1	[more]
A0A1S3BPH8	7.00e-48	45.85	transcription factor RAX2-like OS=Cucumis melo OX=3656 GN=LOC103492286 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g10580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57620.1	9.4e-28	35.35	myb domain protein 36	[more]
AT3G49690.1	4.7e-27	49.14	myb domain protein 84	[more]
AT5G65790.1	2.3e-26	48.28	myb domain protein 68	[more]
AT4G37780.1	4.0e-26	46.22	myb domain protein 87	[more]
AT5G23000.1	1.1e-25	42.03	myb domain protein 37	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 26..94 e-value: 5.5E-12 score: 55.8
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 22..92 score: 10.057746
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 29..92 e-value: 3.2239E-11 score: 54.5038
None	No IPR available	GENE3D	1.10.10.60		coord: 24..97 e-value: 4.7E-18 score: 67.0
None	No IPR available	PANTHER	PTHR48000	OS09G0431300 PROTEIN	coord: 14..60
None	No IPR available	PANTHER	PTHR48000	OS09G0431300 PROTEIN	coord: 67..177
None	No IPR available	PANTHER	PTHR48000:SF36	OS09G0431300 PROTEIN	coord: 67..177
None	No IPR available	PANTHER	PTHR48000:SF36	OS09G0431300 PROTEIN	coord: 14..60
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 27..90 e-value: 1.4E-12 score: 47.6
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 22..96 score: 15.12809
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 22..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g10580.1	Cp4.1LG04g10580.1	mRNA