Cp4.1LG04g10460 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g10460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionProgrammed cell death protein 4-like
LocationCp4.1LG04: 9487755 .. 9487985 (+)
RNA-Seq ExpressionCp4.1LG04g10460
SyntenyCp4.1LG04g10460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGCCAGAGAAGAGCCTGAAGCCAAGCGGTAAATCCGATGTGCGGAAGGATCGGAAATCGGCGACGGGAATGAGCGGATCGCCGAAGAAAGGAGGCCATGGCGGCAAGTTTACTTGGGCGGGAGATGGTTACTCGCCGGCTGAGATCAGCTTCAGGGCTGAAGATATGGACGTGAAGGACCCTAACTTTGAAGATCCGGAAGAGGCAGTGGCGGTGGCGGTTTGA

mRNA sequence

ATGAAGAAGCCAGAGAAGAGCCTGAAGCCAAGCGGTAAATCCGATGTGCGGAAGGATCGGAAATCGGCGACGGGAATGAGCGGATCGCCGAAGAAAGGAGGCCATGGCGGCAAGTTTACTTGGGCGGGAGATGGTTACTCGCCGGCTGAGATCAGCTTCAGGGCTGAAGATATGGACGTGAAGGACCCTAACTTTGAAGATCCGGAAGAGGCAGTGGCGGTGGCGGTTTGA

Coding sequence (CDS)

ATGAAGAAGCCAGAGAAGAGCCTGAAGCCAAGCGGTAAATCCGATGTGCGGAAGGATCGGAAATCGGCGACGGGAATGAGCGGATCGCCGAAGAAAGGAGGCCATGGCGGCAAGTTTACTTGGGCGGGAGATGGTTACTCGCCGGCTGAGATCAGCTTCAGGGCTGAAGATATGGACGTGAAGGACCCTAACTTTGAAGATCCGGAAGAGGCAGTGGCGGTGGCGGTTTGA

Protein sequence

MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDVKDPNFEDPEEAVAVAV
Homology
BLAST of Cp4.1LG04g10460 vs. NCBI nr
Match: KAG6588005.1 (hypothetical protein SDJN03_16570, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021899.1 hypothetical protein SDJN02_15627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149 bits (375), Expect = 5.04e-45
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0

Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV
Sbjct: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60

Query: 61 KDPNFEDPEEAVAVAV 76
          KDPNFEDPEEAVAVAV
Sbjct: 61 KDPNFEDPEEAVAVAV 76

BLAST of Cp4.1LG04g10460 vs. NCBI nr
Match: TYK10141.1 (programmed cell death protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 6.18e-37
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0

Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MKK EKS KP+GKS+VRKDRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEI F+AE MDV
Sbjct: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDPEEAVAVAV 76
          KDPNFED EEAVAVAV
Sbjct: 61 KDPNFEDLEEAVAVAV 76

BLAST of Cp4.1LG04g10460 vs. NCBI nr
Match: XP_022730195.1 (programmed cell death protein 4-like [Durio zibethinus])

HSP 1 Score: 107 bits (266), Expect = 2.04e-28
Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MK   KS K +GKSDVRKDRKS TGMSGSPKKGGHGGKFTWAGDG SPAEI    E +DV
Sbjct: 1  MKNTGKSNKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKFTWAGDGLSPAEIGVEKEVVDV 60

Query: 61 KDPNFEDPEEAV 72
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

BLAST of Cp4.1LG04g10460 vs. NCBI nr
Match: EOY30624.1 (Uncharacterized protein TCM_037765 [Theobroma cacao])

HSP 1 Score: 106 bits (265), Expect = 2.90e-28
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MK   KS K +GKSDVRKDRKS TGMSGSPKKGGHGGK+TW GDG SPAEI F  E +DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDPEEAV 72
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

BLAST of Cp4.1LG04g10460 vs. NCBI nr
Match: ADR71293.1 (hypothetical protein 17 [Hevea brasiliensis])

HSP 1 Score: 105 bits (261), Expect = 1.25e-27
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 13 KSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDVKDPNFEDPEEAV 72
          KSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYS AEI  + E +DVKDPNFEDPEE  
Sbjct: 15 KSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSQAEIGLQGEAVDVKDPNFEDPEETE 74

Query: 73 AV 74
           V
Sbjct: 75 TV 76

BLAST of Cp4.1LG04g10460 vs. ExPASy TrEMBL
Match: A0A5D3CE82 (Programmed cell death protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002840 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 2.99e-37
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0

Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MKK EKS KP+GKS+VRKDRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEI F+AE MDV
Sbjct: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDPEEAVAVAV 76
          KDPNFED EEAVAVAV
Sbjct: 61 KDPNFEDLEEAVAVAV 76

BLAST of Cp4.1LG04g10460 vs. ExPASy TrEMBL
Match: A0A0A0LWP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575040 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 3.71e-36
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 0

Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MKK EKS KPSGKS+VRKDRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEI F+AE MDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDPEEAVAVAV 76
          KDPNFED EEA  VAV
Sbjct: 61 KDPNFEDLEEAETVAV 76

BLAST of Cp4.1LG04g10460 vs. ExPASy TrEMBL
Match: A0A803NU54 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 4.31e-29
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MK   K  K +GKS+V+KDRKS TG++GSPKKGGHGGKFTWAGDGYSP+E+ F+ E MDV
Sbjct: 1  MKSAGKGSKGNGKSEVKKDRKSGTGINGSPKKGGHGGKFTWAGDGYSPSEMGFQKEVMDV 60

Query: 61 KDPNFEDPEEAVAV 74
          KDPNFEDPEE V V
Sbjct: 61 KDPNFEDPEEEVIV 74

BLAST of Cp4.1LG04g10460 vs. ExPASy TrEMBL
Match: A0A6P5XPU9 (programmed cell death protein 4-like OS=Durio zibethinus OX=66656 GN=LOC111285167 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 9.88e-29
Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MK   KS K +GKSDVRKDRKS TGMSGSPKKGGHGGKFTWAGDG SPAEI    E +DV
Sbjct: 1  MKNTGKSNKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKFTWAGDGLSPAEIGVEKEVVDV 60

Query: 61 KDPNFEDPEEAV 72
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

BLAST of Cp4.1LG04g10460 vs. ExPASy TrEMBL
Match: A0A061GU30 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037765 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 1.40e-28
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MK   KS K +GKSDVRKDRKS TGMSGSPKKGGHGGK+TW GDG SPAEI F  E +DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDPEEAV 72
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6588005.15.04e-45100.00hypothetical protein SDJN03_16570, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK10141.16.18e-3786.84programmed cell death protein 4-like [Cucumis melo var. makuwa][more]
XP_022730195.12.04e-2877.78programmed cell death protein 4-like [Durio zibethinus][more]
EOY30624.12.90e-2876.39Uncharacterized protein TCM_037765 [Theobroma cacao][more]
ADR71293.11.25e-2783.87hypothetical protein 17 [Hevea brasiliensis][more]
Match NameE-valueIdentityDescription
A0A5D3CE822.99e-3786.84Programmed cell death protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0LWP43.71e-3685.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575040 PE=4 SV=1[more]
A0A803NU544.31e-2972.97Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6P5XPU99.88e-2977.78programmed cell death protein 4-like OS=Durio zibethinus OX=66656 GN=LOC11128516... [more]
A0A061GU301.40e-2876.39Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037765 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g10460.1Cp4.1LG04g10460.1mRNA