Cp4.1LG04g10090 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g10090
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionethylene-responsive transcription factor TINY-like
LocationCp4.1LG04: 9596314 .. 9596661 (-)
RNA-Seq ExpressionCp4.1LG04g10090
SyntenyCp4.1LG04g10090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTCCCCACCCCTCCCCTGCCTACGCCCTCGTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCGGTTTATGTCCGTCGACGCCGGAGGAATTGAGCGAAATCGTGGAGCTTCCAAGCCTGGGGACGAGTTACGAAACAACCGAATTGGGGAAAGAGTTCGTATTCGCTGACTCATTGGAAGGTTGGCTTTATTCATACCCATGGTATAACAGAGTGAGCAATGTAGAAGAAGAAGAAGAAGAAGAAGATTACAGGTTGTTCGGAGACCAGATTTCAATGGCGGATTATACACACACTTGGATTCCCACTACCACACCCTTCGAAACATTCTTGTGGCCACATTAA

mRNA sequence

ATGGAACTCCCCACCCCTCCCCTGCCTACGCCCTCGTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCGGTTTATGTCCGTCGACGCCGGAGGAATTGAGCGAAATCGTGGAGCTTCCAAGCCTGGGGACGAGTTACGAAACAACCGAATTGGGGAAAGAGTTCGTATTCGCTGACTCATTGGAAGGTTGGCTTTATTCATACCCATGGTATAACAGAGTGAGCAATGTAGAAGAAGAAGAAGAAGAAGAAGATTACAGGTTGTTCGGAGACCAGATTTCAATGGCGGATTATACACACACTTGGATTCCCACTACCACACCCTTCGAAACATTCTTGTGGCCACATTAA

Coding sequence (CDS)

ATGGAACTCCCCACCCCTCCCCTGCCTACGCCCTCGTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCGGTTTATGTCCGTCGACGCCGGAGGAATTGAGCGAAATCGTGGAGCTTCCAAGCCTGGGGACGAGTTACGAAACAACCGAATTGGGGAAAGAGTTCGTATTCGCTGACTCATTGGAAGGTTGGCTTTATTCATACCCATGGTATAACAGAGTGAGCAATGTAGAAGAAGAAGAAGAAGAAGAAGATTACAGGTTGTTCGGAGACCAGATTTCAATGGCGGATTATACACACACTTGGATTCCCACTACCACACCCTTCGAAACATTCTTGTGGCCACATTAA

Protein sequence

MELPTPPLPTPSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVFADSLEGWLYSYPWYNRVSNVEEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLWPH
Homology
BLAST of Cp4.1LG04g10090 vs. ExPASy Swiss-Prot
Match: Q39127 (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-06
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 13  SSSSSSSSSSGLCPST---PEELSEIVELPSLGTSYE-TTELGKEFVFADSLEGWLYSYP 70
           SSS SSSS   L  S+    EEL EIVELPSLG+SY+  T+LG EF+F+DS + W Y   
Sbjct: 134 SSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSDSADLWPYPPQ 193

BLAST of Cp4.1LG04g10090 vs. ExPASy Swiss-Prot
Match: Q9LYD3 (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.4e-05
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 4   PTPPLPTPSSSSSSSSSSSG---------LCPSTPEELSEIVELPSLGTSY--ETTELGK 63
           PT    + +SSSSS SS+S          L  +  EEL EIVELPSLG SY  ++  LG 
Sbjct: 136 PTTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGN 195

Query: 64  EFVFADSLEGWLYSYPW 70
           EFVF DS++  LY  PW
Sbjct: 196 EFVFYDSVDYCLYPPPW 212

BLAST of Cp4.1LG04g10090 vs. ExPASy Swiss-Prot
Match: O80654 (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana OX=3702 GN=ERF037 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.4e-04
Identity = 36/65 (55.38%), Postives = 41/65 (63.08%), Query Frame = 0

Query: 12  SSSSSSSSSSSGLCP------STPEELSEIVELPSLGTSYETTELGKEFVFADSLEGWLY 71
           SSSS S+ +SS L P      ST EELSEIVELPSL TSY+  E   EFV+ DS   +  
Sbjct: 152 SSSSYSTCTSSSLSPSSEEAASTAEELSEIVELPSLETSYD--ESLSEFVYVDS--AYPP 211

BLAST of Cp4.1LG04g10090 vs. NCBI nr
Match: XP_023531433.1 (dehydration-responsive element-binding protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231 bits (590), Expect = 1.84e-74
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0

Query: 1   MELPTPPLPTPSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVFADSL 60
           MELPTPPLPTPSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVFADSL
Sbjct: 151 MELPTPPLPTPSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVFADSL 210

Query: 61  EGWLYSYPWYNRVSNVEEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLWPH 115
           EGWLYSYPWYNRVSNVEEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLWPH
Sbjct: 211 EGWLYSYPWYNRVSNVEEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLWPH 265

BLAST of Cp4.1LG04g10090 vs. NCBI nr
Match: XP_022933229.1 (ethylene-responsive transcription factor TINY-like [Cucurbita moschata])

HSP 1 Score: 218 bits (556), Expect = 2.76e-69
Identity = 114/122 (93.44%), Postives = 114/122 (93.44%), Query Frame = 0

Query: 1   MELPTPPLPTPSSSS-------SSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKE 60
           MELPTPPLPTPSSSS       SSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKE
Sbjct: 146 MELPTPPLPTPSSSSPSPSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKE 205

Query: 61  FVFADSLEGWLYSYPWYNRVSNVEEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLW 115
           FVFADSLEGWLYSYPWYNRVSNVEEEE EEDYRLFGDQISMADYTHTWIPTTTPFETFLW
Sbjct: 206 FVFADSLEGWLYSYPWYNRVSNVEEEE-EEDYRLFGDQISMADYTHTWIPTTTPFETFLW 265

BLAST of Cp4.1LG04g10090 vs. NCBI nr
Match: XP_022973678.1 (ethylene-responsive transcription factor TINY-like [Cucurbita maxima])

HSP 1 Score: 213 bits (541), Expect = 5.04e-67
Identity = 111/118 (94.07%), Postives = 111/118 (94.07%), Query Frame = 0

Query: 1   MELPTPPLPTPSSSSSSSSSSS---GLCPSTPEELSEIVELPSLGTSYETTELGKEFVFA 60
           MELPTPP PTPSSSSSSSSSSS   GLCPSTPEELSEIVELPSLGTSYETTELGKEFVFA
Sbjct: 149 MELPTPPPPTPSSSSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVFA 208

Query: 61  DSLEGWLYSYPWYNRVSNVEEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLWPH 115
           DSLEGWLYSYPWYNRVSNVEEEE EEDYRLFGDQI MADYTHTWIPTTTPFETF WPH
Sbjct: 209 DSLEGWLYSYPWYNRVSNVEEEE-EEDYRLFGDQILMADYTHTWIPTTTPFETFSWPH 265

BLAST of Cp4.1LG04g10090 vs. NCBI nr
Match: XP_038878688.1 (dehydration-responsive element-binding protein 3-like [Benincasa hispida])

HSP 1 Score: 155 bits (393), Expect = 1.01e-44
Identity = 85/116 (73.28%), Postives = 95/116 (81.90%), Query Frame = 0

Query: 1   MELPTPPLPTPSSSSSSSSSSSG-LCPSTPEELSEIVELPSLGTSYETTELGKEFVFADS 60
           ME+PTPPL + SSSSSSSSSSS  LCPSTPEELSEIVELPSLGTSYET ELG EFVF DS
Sbjct: 144 MEIPTPPLSSSSSSSSSSSSSSAVLCPSTPEELSEIVELPSLGTSYETAELGNEFVFVDS 203

Query: 61  LEGWLYSYPWYNRVSNVEEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLWPH 115
           +EGWLYSYPWYNRV+N + +  +EDY  F +QI MADYT T IP +  FE FLWP+
Sbjct: 204 VEGWLYSYPWYNRVNNADHQV-QEDYDFFKEQILMADYTDTLIPNSA-FEAFLWPN 257

BLAST of Cp4.1LG04g10090 vs. NCBI nr
Match: XP_004148719.2 (ethylene-responsive transcription factor TINY [Cucumis sativus] >KGN65347.1 hypothetical protein Csa_020047 [Cucumis sativus])

HSP 1 Score: 142 bits (359), Expect = 1.11e-39
Identity = 80/108 (74.07%), Postives = 90/108 (83.33%), Query Frame = 0

Query: 1   MELPTPPLP----TPSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVF 60
           ME+PTPPL     T +SSSSSSSSS+ LCPS+PEEL+EIVELPSLGTSYET ELG EFVF
Sbjct: 140 MEIPTPPLSSSSSTSTSSSSSSSSSASLCPSSPEELTEIVELPSLGTSYETAELGNEFVF 199

Query: 61  ADSLEGWLYSYPWYNRVSNVEEEEE-EEDYRLF-GDQISMADYTHTWI 102
            DS+EGWLYSYPWYNRVSN E+ EE +EDY LF  DQI MADYT T++
Sbjct: 200 VDSVEGWLYSYPWYNRVSNAEQVEELQEDYGLFFKDQILMADYTDTFL 247

BLAST of Cp4.1LG04g10090 vs. ExPASy TrEMBL
Match: A0A6J1EZ61 (ethylene-responsive transcription factor TINY-like OS=Cucurbita moschata OX=3662 GN=LOC111440123 PE=4 SV=1)

HSP 1 Score: 218 bits (556), Expect = 1.33e-69
Identity = 114/122 (93.44%), Postives = 114/122 (93.44%), Query Frame = 0

Query: 1   MELPTPPLPTPSSSS-------SSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKE 60
           MELPTPPLPTPSSSS       SSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKE
Sbjct: 146 MELPTPPLPTPSSSSPSPSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKE 205

Query: 61  FVFADSLEGWLYSYPWYNRVSNVEEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLW 115
           FVFADSLEGWLYSYPWYNRVSNVEEEE EEDYRLFGDQISMADYTHTWIPTTTPFETFLW
Sbjct: 206 FVFADSLEGWLYSYPWYNRVSNVEEEE-EEDYRLFGDQISMADYTHTWIPTTTPFETFLW 265

BLAST of Cp4.1LG04g10090 vs. ExPASy TrEMBL
Match: A0A6J1IDV7 (ethylene-responsive transcription factor TINY-like OS=Cucurbita maxima OX=3661 GN=LOC111472260 PE=4 SV=1)

HSP 1 Score: 213 bits (541), Expect = 2.44e-67
Identity = 111/118 (94.07%), Postives = 111/118 (94.07%), Query Frame = 0

Query: 1   MELPTPPLPTPSSSSSSSSSSS---GLCPSTPEELSEIVELPSLGTSYETTELGKEFVFA 60
           MELPTPP PTPSSSSSSSSSSS   GLCPSTPEELSEIVELPSLGTSYETTELGKEFVFA
Sbjct: 149 MELPTPPPPTPSSSSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVFA 208

Query: 61  DSLEGWLYSYPWYNRVSNVEEEEEEEDYRLFGDQISMADYTHTWIPTTTPFETFLWPH 115
           DSLEGWLYSYPWYNRVSNVEEEE EEDYRLFGDQI MADYTHTWIPTTTPFETF WPH
Sbjct: 209 DSLEGWLYSYPWYNRVSNVEEEE-EEDYRLFGDQILMADYTHTWIPTTTPFETFSWPH 265

BLAST of Cp4.1LG04g10090 vs. ExPASy TrEMBL
Match: A0A0A0LWW4 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G364460 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 5.40e-40
Identity = 80/108 (74.07%), Postives = 90/108 (83.33%), Query Frame = 0

Query: 1   MELPTPPLP----TPSSSSSSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKEFVF 60
           ME+PTPPL     T +SSSSSSSSS+ LCPS+PEEL+EIVELPSLGTSYET ELG EFVF
Sbjct: 140 MEIPTPPLSSSSSTSTSSSSSSSSSASLCPSSPEELTEIVELPSLGTSYETAELGNEFVF 199

Query: 61  ADSLEGWLYSYPWYNRVSNVEEEEE-EEDYRLF-GDQISMADYTHTWI 102
            DS+EGWLYSYPWYNRVSN E+ EE +EDY LF  DQI MADYT T++
Sbjct: 200 VDSVEGWLYSYPWYNRVSNAEQVEELQEDYGLFFKDQILMADYTDTFL 247

BLAST of Cp4.1LG04g10090 vs. ExPASy TrEMBL
Match: A0A5D3BH31 (Ethylene-responsive transcription factor TINY-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13158G00010 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 8.64e-39
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 0

Query: 1   MELPTPPLPTPSSSS-------SSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKE 60
           ME+PTPPL + SS+S       SSSSSSS LCPS+PEEL+EIVELPSLGTSYET ELG E
Sbjct: 137 MEIPTPPLSSSSSTSTSTSTTSSSSSSSSSLCPSSPEELTEIVELPSLGTSYETAELGNE 196

Query: 61  FVFADSLEGWLYSYPWYNRVSNVEEEEE-EEDYRLF-GDQISMADYTHTWI 102
           FVF DS+EGWLYSYPWYNRVSN E+ +E +EDY LF  DQI MADYT T++
Sbjct: 197 FVFVDSVEGWLYSYPWYNRVSNAEQVKEVQEDYGLFFKDQILMADYTDTFL 247

BLAST of Cp4.1LG04g10090 vs. ExPASy TrEMBL
Match: A0A1S3CI75 (ethylene-responsive transcription factor TINY-like OS=Cucumis melo OX=3656 GN=LOC103501045 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 8.64e-39
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 0

Query: 1   MELPTPPLPTPSSSS-------SSSSSSSGLCPSTPEELSEIVELPSLGTSYETTELGKE 60
           ME+PTPPL + SS+S       SSSSSSS LCPS+PEEL+EIVELPSLGTSYET ELG E
Sbjct: 137 MEIPTPPLSSSSSTSTSTSTTSSSSSSSSSLCPSSPEELTEIVELPSLGTSYETAELGNE 196

Query: 61  FVFADSLEGWLYSYPWYNRVSNVEEEEE-EEDYRLF-GDQISMADYTHTWI 102
           FVF DS+EGWLYSYPWYNRVSN E+ +E +EDY LF  DQI MADYT T++
Sbjct: 197 FVFVDSVEGWLYSYPWYNRVSNAEQVKEVQEDYGLFFKDQILMADYTDTFL 247

BLAST of Cp4.1LG04g10090 vs. TAIR 10
Match: AT5G25810.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-07
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 13  SSSSSSSSSSGLCPST---PEELSEIVELPSLGTSYE-TTELGKEFVFADSLEGWLYSYP 70
           SSS SSSS   L  S+    EEL EIVELPSLG+SY+  T+LG EF+F+DS + W Y   
Sbjct: 134 SSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSDSADLWPYPPQ 193

BLAST of Cp4.1LG04g10090 vs. TAIR 10
Match: AT5G11590.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 3.2e-06
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 4   PTPPLPTPSSSSSSSSSSSG---------LCPSTPEELSEIVELPSLGTSY--ETTELGK 63
           PT    + +SSSSS SS+S          L  +  EEL EIVELPSLG SY  ++  LG 
Sbjct: 136 PTTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGN 195

Query: 64  EFVFADSLEGWLYSYPW 70
           EFVF DS++  LY  PW
Sbjct: 196 EFVFYDSVDYCLYPPPW 212

BLAST of Cp4.1LG04g10090 vs. TAIR 10
Match: AT1G77200.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 4.6e-05
Identity = 36/65 (55.38%), Postives = 41/65 (63.08%), Query Frame = 0

Query: 12  SSSSSSSSSSSGLCP------STPEELSEIVELPSLGTSYETTELGKEFVFADSLEGWLY 71
           SSSS S+ +SS L P      ST EELSEIVELPSL TSY+  E   EFV+ DS   +  
Sbjct: 152 SSSSYSTCTSSSLSPSSEEAASTAEELSEIVELPSLETSYD--ESLSEFVYVDS--AYPP 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q391272.4e-0655.74Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9LYD34.4e-0548.05Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702... [more]
O806546.4e-0455.38Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
XP_023531433.11.84e-74100.00dehydration-responsive element-binding protein 3-like [Cucurbita pepo subsp. pep... [more]
XP_022933229.12.76e-6993.44ethylene-responsive transcription factor TINY-like [Cucurbita moschata][more]
XP_022973678.15.04e-6794.07ethylene-responsive transcription factor TINY-like [Cucurbita maxima][more]
XP_038878688.11.01e-4473.28dehydration-responsive element-binding protein 3-like [Benincasa hispida][more]
XP_004148719.21.11e-3974.07ethylene-responsive transcription factor TINY [Cucumis sativus] >KGN65347.1 hypo... [more]
Match NameE-valueIdentityDescription
A0A6J1EZ611.33e-6993.44ethylene-responsive transcription factor TINY-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1IDV72.44e-6794.07ethylene-responsive transcription factor TINY-like OS=Cucurbita maxima OX=3661 G... [more]
A0A0A0LWW45.40e-4074.07AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G364460 PE=... [more]
A0A5D3BH318.64e-3971.17Ethylene-responsive transcription factor TINY-like OS=Cucumis melo var. makuwa O... [more]
A0A1S3CI758.64e-3971.17ethylene-responsive transcription factor TINY-like OS=Cucumis melo OX=3656 GN=LO... [more]
Match NameE-valueIdentityDescription
AT5G25810.11.7e-0755.74Integrase-type DNA-binding superfamily protein [more]
AT5G11590.13.2e-0648.05Integrase-type DNA-binding superfamily protein [more]
AT1G77200.14.6e-0555.38Integrase-type DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR31985:SF177DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKEcoord: 11..113
NoneNo IPR availablePANTHERPTHR31985ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATEDcoord: 11..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g10090.1Cp4.1LG04g10090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity