Cp4.1LG04g09850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g09850
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Auxin-responsive protein
Location	Cp4.1LG04: 9853943 .. 9856571 (+)
RNA-Seq Expression	Cp4.1LG04g09850
Synteny	Cp4.1LG04g09850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGACGGGAGATGACCCATTACAACTTTATTCTAATATACTTTACTTAGTTTAGATACAAATTCAAGACATTTAAGGAACTAATTTTAACGGAAACAAAATTTATTTTTTTAAAAAAATCACTATAAATTAAGTTTGTATAATTAATGAAAATAATGAGAATAAAAGGAATAGGATAAGATGGATGGTTGGACAAGGTGTCGACAAAGTGAAAAGCTTCCCGATGTTTCTGTCTCCCGAAAGACCTTCCATAGTCAATCAGTGTGTCCATTGACTTTTTTTAGTAACACTCTGTGGGACCCACCTAGTTTGTGCCACCTCATCCACTTCCGTCAAATTGGTCTTATCGTATTCCCATAGTGCCTTCCCCTTGTCTCAATCTCAAAATGTGATTGAAAGATGCAAGAACACCAAAAACTTTAGCAAAAAAAAGTTGAAACATTATATTATAATAATAATAATAACAATAATAATTTCCTAAGTTGAAAGATTCAAGAATACGACAACAACTTATAAATAATAAATAATTTCCTAAGTTGAGATGAGAAAAGCAGAGACAATACCAATTAATTTTGCTGTGAAATTTACGTAAAGGAATAAAGGGCATTTAGATTGAATGTACCGACAATCACCTCCCTAATTTCAATTCTGCTTCTCTCATGGCAACTCTGGCCATGCCCCCACGTGTCGTCTTCTCACTTGCTCCTTTGCTTCTATATATATGAAACCCATTCGTGGTTCATTCATTATTCACTACCAAACAGAAACAGAGACAGACAACAGAGTGTGTAGCTATGTCGTCGGCGGAGACAGTTCCAGAGTCGCCGGAATCTGATTTGACCCATATCAATTTCGATGAAACTGAGCTCACCTTGGGGCTTCCCGGAGCCGAGTTCCGCCCAACTCAGCCAAACAAAGCGTATCACAAACCTAATGCTAATAGACGTGCTTTCCATGAGGCTGGTGATGCCGGAGCCGGGAACTCCACAAGTAATTGAATTTCTTTTACGTCCATCTATTATTAATGCTATGGTTCCTTATTAAGCTCTTATATGTTGATAATATATGGAATGTTTTGAATTTTAAGGGAAAAAGCCGGCAGCCATGGGTTGGCCGCCGGTGAGATCATACAGAAAAAAGACAACAGAAATGAACTATAAGTACGTTAAAGTTGCTGCAGATGGGGCGCCGTATTTGCGTAAGCTCGACCTTCAGATGTTCAATGGCTATCACCAACTGTTCAAGGCATTCCAGGGATTGTTCCCCTCCTATCCAATATGTTGTGAGTCCATCCACTTTAGTATCTTATTCATCCAACTATACTCAGATTGATATTGAATAATATTTTAAATGATTACTTGGAGGAAGGCAACCATTTGAACCCAGTGAAGAGAGCAGATGAATACTTACCAACTTACGAAGATAAAGATGGGGATTGGATGTTAGTTGGAGACGTCCCTTGGAAGTAAGTTTAATTGTTATCTTCCCCATAACTTTTCTTATAGTTTGGATTCTAATCGTGTTGCAATTGTGCAGATTCTTCATTGAATCTTGCAAACGTATTCGTTTGATGAAAGGCTCAGATGGAAATGGCAATGGCATAGGTTTTCTTCCCTTCATTTGTTCCATTTTTATTATCCAAATTAACAAAGGCACTTGGCATTGTTAACTTCTGAGTTTGTTTTTCACTTTTATGCAGCTCCCAGAGCCCCATAGAGAGGAGGAAGGTCAAGGCTTTGGATGGCCAGTTTTTTCATTTTTAATTCGTTAAACTTGGGTTGAGGATATGATCGTAGTTATGGGCTTGCTTGAATGCTATTAGGCCTTAAGATGTTGTATAGTTGTTAACTTGATCACAGGTGGAGTGATCAAATACTAATGGGTCATTGTCATGTTCAAACTCTTCCTCTTATCTGCTAAGTAATAATAAGAACTCAGGTTATCGACTAAATCAACAACAGACAATTTTAGCGTACCATTTTGGTTGGAGAAGAGAGCTCGTTGAATTCGTTACTGCCAGAGTTTGACACAGCTATCATTTGATGCAGCCAATGCTGATACCAGCTTGTCATGAGCAAGCAGTGTCCTTGTCTTGTCCCCAAGCTCCGGTGACTGGAAACCAACAATTCCATTTAGAACATAACAATACATATAAATCATAGAACTTAAACACAGAAACATTAAATAATAGCATGTGAAGGAACTTGGAATAGCTGAGACTAACCTCATGAGAGGCAATGATCAAAAGAGAAGTATTGGTGGGATGAAGAACATGGGTACGAAATGTGTTTCAATACTCATGAACGCACTCTCCTTCGCAACTATGGGATCTCACAATCCACTCTCCTTCCGGGTCCAGTTTCCTCACTGACACTCATTCCTCTCTCCATCGATATGGGATCTCACCGTCTACTCATGAAACATTCGATTACACACAATGTGTAGTGCAAGTTGATTGTAACATCACAGTTTAGCTGGCATAGTAATATCAAAACCTATCTCAATCAAGAGTTGATGTATATACACTATTTCACACACAAATTGTGTCATAACTCTATTATGACTCAATACTTGAACATGAAACCACACTTTGTTTCTTACTCTTCCACAACATCAAATTGCCTCCTAC

mRNA sequence

TGGGACGGGAGATGACCCATTACAACTTTATTCTAATATACTTTACTTAGTTTAGATACAAATTCAAGACATTTAAGGAACTAATTTTAACGGAAACAAAATTTATTTTTTTAAAAAAATCACTATAAATTAAGTTTGTATAATTAATGAAAATAATGAGAATAAAAGGAATAGGATAAGATGGATGGTTGGACAAGGTGTCGACAAAGTGAAAAGCTTCCCGATGTTTCTGTCTCCCGAAAGACCTTCCATAGTCAATCAGTGTGTCCATTGACTTTTTTTAGTAACACTCTGTGGGACCCACCTAGTTTGTGCCACCTCATCCACTTCCGTCAAATTGGTCTTATCGTATTCCCATAGTGCCTTCCCCTTGTCTCAATCTCAAAATGTGATTGAAAGATGCAAGAACACCAAAAACTTTAGCAAAAAAAAGTTGAAACATTATATTATAATAATAATAATAACAATAATAATTTCCTAAGTTGAAAGATTCAAGAATACGACAACAACTTATAAATAATAAATAATTTCCTAAGTTGAGATGAGAAAAGCAGAGACAATACCAATTAATTTTGCTGTGAAATTTACGTAAAGGAATAAAGGGCATTTAGATTGAATGTACCGACAATCACCTCCCTAATTTCAATTCTGCTTCTCTCATGGCAACTCTGGCCATGCCCCCACGTGTCGTCTTCTCACTTGCTCCTTTGCTTCTATATATATGAAACCCATTCGTGGTTCATTCATTATTCACTACCAAACAGAAACAGAGACAGACAACAGAGTGTGTAGCTATGTCGTCGGCGGAGACAGTTCCAGAGTCGCCGGAATCTGATTTGACCCATATCAATTTCGATGAAACTGAGCTCACCTTGGGGCTTCCCGGAGCCGAGTTCCGCCCAACTCAGCCAAACAAAGCGTATCACAAACCTAATGCTAATAGACGTGCTTTCCATGAGGCTGGTGATGCCGGAGCCGGGAACTCCACAAGGAAAAAGCCGGCAGCCATGGGTTGGCCGCCGGTGAGATCATACAGAAAAAAGACAACAGAAATGAACTATAAGTACGTTAAAGTTGCTGCAGATGGGGCGCCGTATTTGCGTAAGCTCGACCTTCAGATGTTCAATGGCTATCACCAACTGTTCAAGGCATTCCAGGGATTGTTCCCCTCCTATCCAATATGTTGTGAATTCTTCATTGAATCTTGCAAACGTATTCGTTTGATGAAAGGCTCAGATGGAAATGGCAATGGCATAGCTCCCAGAGCCCCATAGAGAGGAGGAAGGTCAAGGCTTTGGATGGCCAGTTTTTTCATTTTTAATTCGTTAAACTTGGGTTGAGGATATGATCGTAGTTATGGGCTTGCTTGAATGCTATTAGGCCTTAAGATGTTGTATAGTTGTTAACTTGATCACAGGTGGAGTGATCAAATACTAATGGGTCATTGTCATGTTCAAACTCTTCCTCTTATCTGCTAAGTAATAATAAGAACTCAGGTTATCGACTAAATCAACAACAGACAATTTTAGCGTACCATTTTGGTTGGAGAAGAGAGCTCGTTGAATTCGTTACTGCCAGAGTTTGACACAGCTATCATTTGATGCAGCCAATGCTGATACCAGCTTGTCATGAGCAAGCAGTGTCCTTGTCTTGTCCCCAAGCTCCGGTGACTGGAAACCAACAATTCCATTTAGAACATAACAATACATATAAATCATAGAACTTAAACACAGAAACATTAAATAATAGCATGTGAAGGAACTTGGAATAGCTGAGACTAACCTCATGAGAGGCAATGATCAAAAGAGAAGTATTGGTGGGATGAAGAACATGGGTACGAAATGTGTTTCAATACTCATGAACGCACTCTCCTTCGCAACTATGGGATCTCACAATCCACTCTCCTTCCGGGTCCAGTTTCCTCACTGACACTCATTCCTCTCTCCATCGATATGGGATCTCACCGTCTACTCATGAAACATTCGATTACACACAATGTGTAGTGCAAGTTGATTGTAACATCACAGTTTAGCTGGCATAGTAATATCAAAACCTATCTCAATCAAGAGTTGATGTATATACACTATTTCACACACAAATTGTGTCATAACTCTATTATGACTCAATACTTGAACATGAAACCACACTTTGTTTCTTACTCTTCCACAACATCAAATTGCCTCCTAC

Coding sequence (CDS)

ATGTCGTCGGCGGAGACAGTTCCAGAGTCGCCGGAATCTGATTTGACCCATATCAATTTCGATGAAACTGAGCTCACCTTGGGGCTTCCCGGAGCCGAGTTCCGCCCAACTCAGCCAAACAAAGCGTATCACAAACCTAATGCTAATAGACGTGCTTTCCATGAGGCTGGTGATGCCGGAGCCGGGAACTCCACAAGGAAAAAGCCGGCAGCCATGGGTTGGCCGCCGGTGAGATCATACAGAAAAAAGACAACAGAAATGAACTATAAGTACGTTAAAGTTGCTGCAGATGGGGCGCCGTATTTGCGTAAGCTCGACCTTCAGATGTTCAATGGCTATCACCAACTGTTCAAGGCATTCCAGGGATTGTTCCCCTCCTATCCAATATGTTGTGAATTCTTCATTGAATCTTGCAAACGTATTCGTTTGATGAAAGGCTCAGATGGAAATGGCAATGGCATAGCTCCCAGAGCCCCATAG

Protein sequence

MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAGAGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAFQGLFPSYPICCEFFIESCKRIRLMKGSDGNGNGIAPRAP

Homology

[Close]

BLAST of Cp4.1LG04g09850 vs. ExPASy Swiss-Prot
Match: P32293 (Auxin-induced protein 22A OS=Vigna radiata var. radiata OX=3916 GN=AUX22A PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-19
Identity = 67/180 (37.22%), Postives = 85/180 (47.22%), Query Frame = 0


Query: 18  INFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAGAGNST---------RKK 77
           +  + TEL LGLP AE      NK   K   N+R F E  D G  NS+           K
Sbjct: 6   LGLEITELRLGLPDAE-HVAVANKNGEK--KNKRVFSEIDDVGDENSSSGGGGDRKMENK 65

Query: 78  PAAMGWPPVRSYRKKTT--EMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAFQGLFPS 137
              +GWPPV SYRKK +  E +  YVKV+ DGAP+LRK+DL M  GY  L  A + LF  
Sbjct: 66  NQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLFGC 125

Query: 138 Y-----------------------------PICCEFFIESCKRIRLMKGSDGNGNGIAPR 158
           Y                              +  E F+ESCKR+R+MK +D  G G+ P+
Sbjct: 126 YGMVEALKNVENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPK 182

[Close]

BLAST of Cp4.1LG04g09850 vs. ExPASy Swiss-Prot
Match: P13088 (Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.8e-19
Identity = 66/182 (36.26%), Postives = 86/182 (47.25%), Query Frame = 0


Query: 18  INFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGD------AGAGNSTRK---- 77
           +  + TEL LGLP AE + +  N    K N  +RAF E  D      + +G   RK    
Sbjct: 6   LGLEITELRLGLPDAEHQVSVVN----KKNEKKRAFSEIDDGVGDENSSSGGGDRKMETN 65

Query: 78  KPAAMGWPPVRSYRKKTT---EMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAFQGLF 137
           K   +GWPPV SYRKK +     +  YVKV+ DGAP+LRK+DL +  GY  L  A   LF
Sbjct: 66  KSQVVGWPPVCSYRKKNSMNEGASKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLF 125

Query: 138 PSY-----------------------------PICCEFFIESCKRIRLMKGSDGNGNGIA 158
             Y                              +  E F+ESCKR+R+MK SD  G G+ 
Sbjct: 126 GCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQ 183

[Close]

BLAST of Cp4.1LG04g09850 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.3e-18
Identity = 64/182 (35.16%), Postives = 86/182 (47.25%), Query Frame = 0


Query: 18  INFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAGAGNSTRK-------KPA 77
           +N  ETEL LGLPG +       +     N N+R      +    +S+RK       K  
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64

Query: 78  AMGWPPVRSYRK-----KTTEMNYK----YVKVAADGAPYLRKLDLQMFNGYHQLFKAFQ 137
            +GWPPVRSYRK     K  E  ++    YVKV+ DGAPYLRK+DL  + GY +L KA +
Sbjct: 65  IVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKALE 124

Query: 138 GLF-------------------PSY-----------PICCEFFIESCKRIRLMKGSDGNG 154
            +F                   P+Y            +  E FI +CKR+R+MKGS+  G
Sbjct: 125 VMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKG 184

[Close]

BLAST of Cp4.1LG04g09850 vs. ExPASy Swiss-Prot
Match: P49678 (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana OX=3702 GN=IAA2 PE=1 SV=3)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 0


Query: 15  LTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAGAGNSTRKKPAAMGW 74
           +  +N  +TEL LGLPG   +  +  +     + N+R F E  D    ++   K   +GW
Sbjct: 6   VNELNLKDTELCLGLPGRTEKIKEEQEVSCVKSNNKRLFEETRDE-EESTPPTKTQIVGW 65

Query: 75  PPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAFQGLF---------- 134
           PPVRS RK    ++  YVKV+ DGAPYLRK+DL+ +  Y +L KA + +F          
Sbjct: 66  PPVRSSRKNNNSVS--YVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFKVMIGEYCER 125

Query: 135 ---------PSY-----------PICCEFFIESCKRIRLMKGSD 149
                    P+Y            +  + F  SCKR+R+MKGSD
Sbjct: 126 EGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSD 166

[Close]

BLAST of Cp4.1LG04g09850 vs. ExPASy Swiss-Prot
Match: O24541 (Auxin-induced protein 22C OS=Vigna radiata var. radiata OX=3916 GN=AUX22C PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.1e-17
Identity = 64/174 (36.78%), Postives = 79/174 (45.40%), Query Frame = 0


Query: 18  INFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHE-AGDAGAGNSTRKKPA---AMG 77
           +  + TEL LGLPGA     + N    K    +R F +  G+  +     KK      +G
Sbjct: 6   LGLEITELRLGLPGA---GGENNTDKDKNKNKKRVFSDIEGENSSSEEDGKKETKNQVVG 65

Query: 78  WPPVRSYRKKTTEMNYK-YVKVAADGAPYLRKLDLQMFNGYHQLFKAFQGLFPSYPIC-- 137
           WPPV SYRKK T    K YVKV+ DGAP+LRK+DL M  GY  L  A    F  Y IC  
Sbjct: 66  WPPVCSYRKKNTVNEPKLYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGCYGICEA 125

Query: 138 ---------------------------CEFFIESCKRIRLMKGSDGNGNGIAPR 158
                                       E F ESCKR+R+MK SD  G  + P+
Sbjct: 126 LKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKGFDLQPK 176

[Close]

BLAST of Cp4.1LG04g09850 vs. NCBI nr
Match: XP_023531208.1 (auxin-responsive protein IAA1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317 bits (813), Expect = 1.03e-108
Identity = 158/190 (83.16%), Postives = 159/190 (83.68%), Query Frame = 0


Query: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG 60
           MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG
Sbjct: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG 60

Query: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120
           AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF
Sbjct: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120

Query: 121 QGLFPSYPICC-------------------------------EFFIESCKRIRLMKGSDG 159
           QGLFPSYPICC                               +FFIESCKRIRLMKGSDG
Sbjct: 121 QGLFPSYPICCNHLNPVKRADEYLPTYEDKDGDWMLVGDVPWKFFIESCKRIRLMKGSDG 180

[Close]

BLAST of Cp4.1LG04g09850 vs. NCBI nr
Match: XP_022932838.1 (auxin-responsive protein IAA1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 308 bits (788), Expect = 6.65e-105
Identity = 154/190 (81.05%), Postives = 155/190 (81.58%), Query Frame = 0


Query: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG 60
           MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNK YHKPNANRRAFHEA DAG
Sbjct: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHEADDAG 60

Query: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120
           AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF
Sbjct: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120

Query: 121 QGLFPSYPICC-------------------------------EFFIESCKRIRLMKGSDG 159
           Q LFPSYPICC                               + FIESCKRIRLMKGSDG
Sbjct: 121 QELFPSYPICCNNLNPVKRAYEYLPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDG 180

[Close]

BLAST of Cp4.1LG04g09850 vs. NCBI nr
Match: KAG7021827.1 (Auxin-induced protein AUX22 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308 bits (788), Expect = 6.65e-105
Identity = 154/190 (81.05%), Postives = 155/190 (81.58%), Query Frame = 0


Query: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG 60
           MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNK YHKPNANRRAFHEA DAG
Sbjct: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHEADDAG 60

Query: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120
           AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF
Sbjct: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120

Query: 121 QGLFPSYPICC-------------------------------EFFIESCKRIRLMKGSDG 159
           Q LFPSYPICC                               + FIESCKRIRLMKGSDG
Sbjct: 121 QELFPSYPICCNNLNPVKRADEYLPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDG 180

[Close]

BLAST of Cp4.1LG04g09850 vs. NCBI nr
Match: XP_023531207.1 (auxin-responsive protein IAA1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307 bits (786), Expect = 2.34e-104
Identity = 153/185 (82.70%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG 60
           MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG
Sbjct: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG 60

Query: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120
           AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF
Sbjct: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120

Query: 121 QGLFPSYPICC-------------------------------EFFIESCKRIRLMKGSDG 154
           QGLFPSYPICC                               +FFIESCKRIRLMKGSDG
Sbjct: 121 QGLFPSYPICCNHLNPVKRADEYLPTYEDKDGDWMLVGDVPWKFFIESCKRIRLMKGSDG 180

[Close]

BLAST of Cp4.1LG04g09850 vs. NCBI nr
Match: KAG6587938.1 (Auxin-induced protein AUX22, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305 bits (781), Expect = 7.76e-104
Identity = 153/190 (80.53%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG 60
           MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNK YHKPNANRRAFHEA DAG
Sbjct: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHEADDAG 60

Query: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120
           AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKL LQMFNGYHQLFKAF
Sbjct: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLGLQMFNGYHQLFKAF 120

Query: 121 QGLFPSYPICC-------------------------------EFFIESCKRIRLMKGSDG 159
           Q LFPSYPICC                               + FIESCKRIRLMKGSDG
Sbjct: 121 QELFPSYPICCNNLNPVKRADEYLPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDG 180

[Close]

BLAST of Cp4.1LG04g09850 vs. ExPASy TrEMBL
Match: A0A6J1F2V8 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111439311 PE=3 SV=1)

HSP 1 Score: 308 bits (788), Expect = 3.22e-105
Identity = 154/190 (81.05%), Postives = 155/190 (81.58%), Query Frame = 0


Query: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG 60
           MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNK YHKPNANRRAFHEA DAG
Sbjct: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHEADDAG 60

Query: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120
           AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF
Sbjct: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120

Query: 121 QGLFPSYPICC-------------------------------EFFIESCKRIRLMKGSDG 159
           Q LFPSYPICC                               + FIESCKRIRLMKGSDG
Sbjct: 121 QELFPSYPICCNNLNPVKRAYEYLPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDG 180

[Close]

BLAST of Cp4.1LG04g09850 vs. ExPASy TrEMBL
Match: A0A6J1F375 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111439311 PE=3 SV=1)

HSP 1 Score: 303 bits (775), Expect = 3.80e-103
Identity = 153/196 (78.06%), Postives = 155/196 (79.08%), Query Frame = 0


Query: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG 60
           MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNK YHKPNANRRAFHEA DAG
Sbjct: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHEADDAG 60

Query: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120
           AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF
Sbjct: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120

Query: 121 QGLFPSYPICCEF-------------------------------------FIESCKRIRL 159
           Q LFPSYPIC ++                                     FIESCKRIRL
Sbjct: 121 QELFPSYPICFDYVNEGNNLNPVKRAYEYLPTYEDKDGDWMLVGDVPWKLFIESCKRIRL 180

[Close]

BLAST of Cp4.1LG04g09850 vs. ExPASy TrEMBL
Match: A0A6J1KGU6 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111495646 PE=3 SV=1)

HSP 1 Score: 294 bits (752), Expect = 9.88e-100
Identity = 148/190 (77.89%), Postives = 150/190 (78.95%), Query Frame = 0


Query: 1   MSSAETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAG 60
           M  AETV ESPESDLTHINFDETELTLGLPGAEFRPTQPNK YHKPNANRRAFH+A DAG
Sbjct: 1   MPLAETVLESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHDAVDAG 60

Query: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120
           AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF
Sbjct: 61  AGNSTRKKPAAMGWPPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAF 120

Query: 121 QGLFPSYPICC-------------------------------EFFIESCKRIRLMKGSDG 159
           Q L PSYPICC                               + FIESCKRIRLMKGSDG
Sbjct: 121 QELLPSYPICCNNLNPVKRAYEYFPTYEDKDGDWMLVGDVPWKLFIESCKRIRLMKGSDG 180

[Close]

BLAST of Cp4.1LG04g09850 vs. ExPASy TrEMBL
Match: A0A6J1CUS1 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014532 PE=3 SV=1)

HSP 1 Score: 205 bits (522), Expect = 2.01e-64
Identity = 111/211 (52.61%), Postives = 129/211 (61.14%), Query Frame = 0


Query: 4   AETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAGAGN 63
           +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NK YH+PNA +R FH+  D+  G+
Sbjct: 3   SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGS 62

Query: 64  STRK-----------------KPAAMGWPPVRSYRKKTTEMNY-KYVKVAADGAPYLRKL 123
           S  +                 K A MGWPPVRSYRKKT EMN  KYVKVAADGAPYLRK+
Sbjct: 63  SISEQCGSCDKAKLISSADGQKRAVMGWPPVRSYRKKTIEMNNCKYVKVAADGAPYLRKI 122

Query: 124 DLQMFNGYHQLFKAFQGLFPSYPICCEF-------------------------------- 159
           DL+MFN Y +LF  F+ LF S+PICC++                                
Sbjct: 123 DLEMFNSYKELFNTFRKLFISFPICCDYLEEGNILNPMKRADEYLPTYEDKDGDWMLVGD 182

[Close]

BLAST of Cp4.1LG04g09850 vs. ExPASy TrEMBL
Match: A0A6J1CTX7 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014532 PE=3 SV=1)

HSP 1 Score: 200 bits (509), Expect = 1.77e-62
Identity = 109/211 (51.66%), Postives = 127/211 (60.19%), Query Frame = 0


Query: 4   AETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAGAGN 63
           +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NK YH+PNA +R FH+  D+  G+
Sbjct: 3   SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGS 62

Query: 64  STRK-----------------KPAAMGWPPVRSYRKKTTEMNY-KYVKVAADGAPYLRKL 123
           S  +                 K A MGWPPVRSYRKKT EMN  KYVKVAADGAPYLRK+
Sbjct: 63  SISEQCGSCDKAKLISSADGQKRAVMGWPPVRSYRKKTIEMNNCKYVKVAADGAPYLRKI 122

Query: 124 DLQMFNGYHQLFKAFQGLFPSYPICCEF-------------------------------- 159
           DL+MFN Y +LF  F+ LF S+PICC++                                
Sbjct: 123 DLEMFNSYKELFNTFRKLFISFPICCDYLEEGNILNPMKRADEYLPTYEDKDGDWMLVGD 182

[Close]

BLAST of Cp4.1LG04g09850 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-19
Identity = 64/182 (35.16%), Postives = 86/182 (47.25%), Query Frame = 0


Query: 18  INFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAGAGNSTRK-------KPA 77
           +N  ETEL LGLPG +       +     N N+R      +    +S+RK       K  
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64

Query: 78  AMGWPPVRSYRK-----KTTEMNYK----YVKVAADGAPYLRKLDLQMFNGYHQLFKAFQ 137
            +GWPPVRSYRK     K  E  ++    YVKV+ DGAPYLRK+DL  + GY +L KA +
Sbjct: 65  IVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKALE 124

Query: 138 GLF-------------------PSY-----------PICCEFFIESCKRIRLMKGSDGNG 154
            +F                   P+Y            +  E FI +CKR+R+MKGS+  G
Sbjct: 125 VMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKG 184

[Close]

BLAST of Cp4.1LG04g09850 vs. TAIR 10
Match: AT3G23030.1 (indole-3-acetic acid inducible 2 )

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-18
Identity = 56/164 (34.15%), Postives = 81/164 (49.39%), Query Frame = 0


Query: 15  LTHINFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAGAGNSTRKKPAAMGW 74
           +  +N  +TEL LGLPG   +  +  +     + N+R F E  D    ++   K   +GW
Sbjct: 6   VNELNLKDTELCLGLPGRTEKIKEEQEVSCVKSNNKRLFEETRDE-EESTPPTKTQIVGW 65

Query: 75  PPVRSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAFQGLF---------- 134
           PPVRS RK    ++  YVKV+ DGAPYLRK+DL+ +  Y +L KA + +F          
Sbjct: 66  PPVRSSRKNNNSVS--YVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFKVMIGEYCER 125

Query: 135 ---------PSY-----------PICCEFFIESCKRIRLMKGSD 149
                    P+Y            +  + F  SCKR+R+MKGSD
Sbjct: 126 EGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSD 166

[Close]

BLAST of Cp4.1LG04g09850 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 88.6 bits (218), Expect = 5.0e-18
Identity = 61/175 (34.86%), Postives = 82/175 (46.86%), Query Frame = 0


Query: 18  INFDETELTLGLPGAEFRPT--QPNKAYHKPNANRRAFHEAGDAGAGNSTRKKPAAMGWP 77
           +N   TEL LGLPG E   +  + NK    P A  +     G      ++  K   +GWP
Sbjct: 11  VNLKATELRLGLPGTEETVSCGKSNKRV-LPEATEKEIESTGK--TETASPPKAQIVGWP 70

Query: 78  PVRSYRKKT-------TEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAFQGLF---- 137
           PVRSYRK         +E    YVKV+ DGAPYLRK+DL M+  Y +L K+ + +F    
Sbjct: 71  PVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKFSV 130

Query: 138 ---------------PSY-----------PICCEFFIESCKRIRLMKGSDGNGNG 154
                          P+Y            +  E F+ SCKR+R+MKGS+  G G
Sbjct: 131 GEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGLG 182

[Close]

BLAST of Cp4.1LG04g09850 vs. TAIR 10
Match: AT4G14560.1 (indole-3-acetic acid inducible )

HSP 1 Score: 88.2 bits (217), Expect = 6.5e-18
Identity = 56/161 (34.78%), Postives = 82/161 (50.93%), Query Frame = 0


Query: 18  INFDETELTLGLPGAEFRPTQPNKAYHKPNANRRAFHEAGDAGAGNSTRKKPAAMGWPPV 77
           +N  +TEL LGLPGA+    Q   +  + N N+R  +++ +  A      K   +GWPPV
Sbjct: 7   LNLKDTELRLGLPGAQ-EEQQLELSCVRSN-NKRKNNDSTEESA--PPPAKTQIVGWPPV 66

Query: 78  RSYRKKTTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFKAFQGLF------------- 137
           RS RK     N  YVKV+ DGAPYLRK+DL+M+  Y +L KA + +F             
Sbjct: 67  RSNRKNNNNKNVSYVKVSMDGAPYLRKIDLKMYKNYPELLKALENMFKFTVGEYSEREGY 126

Query: 138 ------PSY-----------PICCEFFIESCKRIRLMKGSD 149
                 P+Y            +  + F  SC+++R+MKGS+
Sbjct: 127 KGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSE 163

[Close]

BLAST of Cp4.1LG04g09850 vs. TAIR 10
Match: AT3G15540.1 (indole-3-acetic acid inducible 19 )

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-17
Identity = 67/188 (35.64%), Postives = 85/188 (45.21%), Query Frame = 0


Query: 18  INFDETELTLGLPGAEFRPTQPNK-AYHKPNANRRAFH----EAGDAGAGNSTRK---KP 77
           +  + TEL LGLPG +       K A+ + N      +    E+G   +G    K    P
Sbjct: 6   LGLEITELRLGLPGRDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGGDAEKVNDSP 65

Query: 78  AA----MGWPPVRSYRKK-------TTEMNYKYVKVAADGAPYLRKLDLQMFNGYHQLFK 137
           AA    +GWPPV SYRKK       TT++   YVKV+ DG PYLRK+DL    GY  L  
Sbjct: 66  AAKSQVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDDLAF 125

Query: 138 AFQGLFPSYPI--------CCEF---------------------FIESCKRIRLMKGSDG 158
           A   LF    I         CE+                     F+ESCKR+R+MK SD 
Sbjct: 126 ALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDA 185

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g09850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32293	4.4e-19	37.22	Auxin-induced protein 22A OS=Vigna radiata var. radiata OX=3916 GN=AUX22A PE=2 S...	[more]
P13088	9.8e-19	36.26	Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1	[more]
Q38822	8.3e-18	35.16	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]
P49678	1.8e-17	34.15	Auxin-responsive protein IAA2 OS=Arabidopsis thaliana OX=3702 GN=IAA2 PE=1 SV=3	[more]
O24541	4.1e-17	36.78	Auxin-induced protein 22C OS=Vigna radiata var. radiata OX=3916 GN=AUX22C PE=2 S...	[more]

BLAST of Cp4.1LG04g09850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531208.1	1.03e-108	83.16	auxin-responsive protein IAA1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022932838.1	6.65e-105	81.05	auxin-responsive protein IAA1-like isoform X2 [Cucurbita moschata]	[more]
KAG7021827.1	6.65e-105	81.05	Auxin-induced protein AUX22 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023531207.1	2.34e-104	82.70	auxin-responsive protein IAA1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6587938.1	7.76e-104	80.53	Auxin-induced protein AUX22, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG04g09850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F2V8	3.22e-105	81.05	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111439311 PE=3 SV=1	[more]
A0A6J1F375	3.80e-103	78.06	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111439311 PE=3 SV=1	[more]
A0A6J1KGU6	9.88e-100	77.89	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111495646 PE=3 SV=1	[more]
A0A6J1CUS1	2.01e-64	52.61	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014532 PE=3 SV=...	[more]
A0A6J1CTX7	1.77e-62	51.66	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014532 PE=3 SV=...	[more]

BLAST of Cp4.1LG04g09850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04240.1	5.9e-19	35.16	AUX/IAA transcriptional regulator family protein	[more]
AT3G23030.1	1.3e-18	34.15	indole-3-acetic acid inducible 2	[more]
AT5G43700.1	5.0e-18	34.86	AUX/IAA transcriptional regulator family protein	[more]
AT4G14560.1	6.5e-18	34.78	indole-3-acetic acid inducible	[more]
AT3G15540.1	3.2e-17	35.64	indole-3-acetic acid inducible 19	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 83..131 e-value: 1.1E-9 score: 40.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..76
None	No IPR available	PANTHER	PTHR31734:SF34	AUXIN-RESPONSIVE PROTEIN IAA15	coord: 7..130
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 57..128 e-value: 4.4E-14 score: 52.9
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 7..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g09850.1	Cp4.1LG04g09850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus