Cp4.1LG04g09640 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g09640
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Alba domain-containing protein
Location	Cp4.1LG04: 9931184 .. 9933670 (-)
RNA-Seq Expression	Cp4.1LG04g09640
Synteny	Cp4.1LG04g09640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTTGGTAGGTTAATAATATTGAAAGGTGTTACATTAAATAGAGATTGGTTATAAAATTGGTTAATTATTTGGGAATTGCGGCGGCCTCAACACAAATACCTGATTTTGAGATAATTTCAACCCTTTTCTTCACTGCTCAACCCCTTTCTCAAATTCGCGTGAGTTTTAGGGTTAGGGTTTTAGCATTCAGAAGCTCAATGGAAGAGATAACAGAGGGTGTTAACTCCATCGCCTTGACGGCTGACTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCCAAGGTTTGTTTCCTTTTTTGCTCTCTTCTTCAATTTCGCTTACTCTCTTTCCAAGGGTTGTTATTTGGTTTAGATTTTCAACTTTATCCCCGTTTTGGGTTTTATCTGTTCGTTTATCTGGTTTTGATAACCCTCTGTTACCGTTTTTTCAATTTGTGTAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGAATGGGTAGGCTATCTACACTGTTTTCGGGCTTAACATTTAGGGTTTGAGTTTAATTTCTCTTTCTCGTGTTTGGATGTAATTTATTACTGTATTTGTTATTCCTTTAATTACTTTGACGGTTTGAGTTACTTCGGACTGTTGAGCAATAGAGTTAGAGATATTTTGTTAATGAGTACATTTCATTTGTTAACCTTTCATACCAAGATATTCATGTTCTTGTGTGATGTGATATATGACAAATGAAACATCTTTTCAAATGTTCTCTTGTGGGAAGTTAACTTGTCATTGTTTTTCTTTTTTCTTTTTGCAACCCTTTTTGCATCTCGTTTTGCAACTAGTCTATAGATTTTCTGCTTGCATATCAATGCAGTCAATTGATCCTTCTGCTATGGTGTTTTGGGTTATTAATATGTTAAAACTTCTATGGATGCTTTTGCAGCCATTGCAACTGTGGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTCTAGAAAAGAGTAAATATCCTCTTCCTTCCTTTTTTAATAATATGTAGTCGGGGTTTTGTCTTAACACTCACAAAAATTTTCTTCTATTCTATAGAGATCATGACTTCTACCGTTGATATCAAGGATGATTCTCGGGGGAGACCAGTTCAGAAGGCTAAGGTTGCCTCATATTGTCTTCTTGTTTTGGTTTCTTCATAATGGATGAAAATTTGGGAGTTTTCTCTCTTGTCTCCATTTTTGGCATATAAAATTATATTCTCATGTCAATTTTAATCCAACTTATCACGTTAATTAATTCTCTTAGTTGGACCCTAGAAATTAGTGGTGCAGGTAATGGTATTTGTTCATTGAACATGCAACTGAATAACTGTGACTGTGCAATTCTCTGTGTTTTCATTTGATTAGATGTGTCTTAACACTTGTCATGACTGATTTTTGCCTTCCAGATTGAGATTGTGCTGGGGAAAACTGAAAACTTTGATGAACTGATGGCTGCTGCTGCGGAGGAAAGGGAAAACGGAGATGGTGAAGAGCAGAGTTGAAAAGATTTTTTTTTTCTTTTTTTCTTTTTTACCCTGTTCTTCTTATCCTCCTTGTGGATGAGTCTGGTTATTTCCTTATATCTGGTCTCTCTGTTTTTAATTAACGTTAGTAAACAAGTGGTTTATTTACTGATGTAGGCTTTTAGTTGGTGAACCATTTATTTGCCCTTTTTTAGATACTATGGGATATCTTCGTTTAAGAGCGTGGAAACCTAATCTGAGTTACCCTTCAAAATCAAGTTTATATTATTATTTTGATGCATCAATTTTGGTAAACATGCATTCAATTGGTGATCTGCTTCAGTAATTCAAACTGCATTGAAGTCTATTCTCTGTTTATGTAGTACGATTTGTGATTGAACCTTGGCCTCCATGATCTGATGATCACTATGGTGGACATCTGCTTGAGTTCATATCACGGATTGACCAGACATGTTAGGTCTCAAAAGACTGCTTTTGAGAAATATAGTTTGTGATAGCATAGTATTCCCTGTAGCTATTACAACATGGGTTAATGCATTCAGGTCTATAGCAGGCGCCTCTCCTGCGCCTCTCCTGCATTCTTCCATGTATGGCCAGTTTTAGGAGGATTATCAAATGTGGGTCATATCTTCGCCTATGATTTGTCTCTATAGTGATTACTCTTGTTTTCATGATAAAAAAAACTAGTTCGAACTAGTAGAGTTTAGAATGCGTACATGTCTTAACACTTGTCATGAAGTGAAGCCTGGAAGATGGATTATTGTGTCAAATATACTTGAACTGTAGATTTCATACATGCTTAACTGGGTCAGAACAATGCTCCTGGTGCCTTTAGAAGGGCAAGCGACGTATTAGAAAGCTGTCTTTAAAGGTCCATCCAGATAAGAACAATGCTCTTGGTGCTGAAGAAGTGTTTAAAGGCTATATCAAAGGCATTTCAGTGTCT

mRNA sequence

ATATTTGGTAGGTTAATAATATTGAAAGGTGTTACATTAAATAGAGATTGGTTATAAAATTGGTTAATTATTTGGGAATTGCGGCGGCCTCAACACAAATACCTGATTTTGAGATAATTTCAACCCTTTTCTTCACTGCTCAACCCCTTTCTCAAATTCGCGTGAGTTTTAGGGTTAGGGTTTTAGCATTCAGAAGCTCAATGGAAGAGATAACAGAGGGTGTTAACTCCATCGCCTTGACGGCTGACTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCCAAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGAATGGCCATTGCAACTGTGGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTCTAGAAAAGAAGATCATGACTTCTACCGTTGATATCAAGGATGATTCTCGGGGGAGACCAGTTCAGAAGGCTAAGGTCCATCCAGATAAGAACAATGCTCTTGGTGCTGAAGAAGTGTTTAAAGGCTATATCAAAGGCATTTCAGTGTCT

Coding sequence (CDS)

ATGGAAGAGATAACAGAGGGTGTTAACTCCATCGCCTTGACGGCTGACTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCCAAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGAATGGCCATTGCAACTGTGGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTCTAGAAAAGAAGATCATGACTTCTACCGTTGATATCAAGGATGATTCTCGGGGGAGACCAGTTCAGAAGGCTAAGGTCCATCCAGATAAGAACAATGCTCTTGGTGCTGAAGAAGTGTTTAAAGGCTATATCAAAGGCATTTCAGTGTCT

Protein sequence

MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKVHPDKNNALGAEEVFKGYIKGISVS

Homology

[Close]

BLAST of Cp4.1LG04g09640 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.9e-42
Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEIT+GVN++ L  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 101
           VVTV EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAK+
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. NCBI nr
Match: XP_022987902.1 (uncharacterized protein At2g34160-like [Cucurbita maxima] >XP_022987903.1 uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 187 bits (474), Expect = 1.53e-58
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 100
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. NCBI nr
Match: XP_022924689.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023529342.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >KAG7021810.1 hypothetical protein SDJN02_15538 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187 bits (474), Expect = 1.53e-58
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 100
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. NCBI nr
Match: XP_022961070.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023516863.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >XP_023516864.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >XP_023516865.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >KAG6589857.1 hypothetical protein SDJN03_15280, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023529.1 hypothetical protein SDJN02_14555 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187 bits (474), Expect = 1.53e-58
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 100
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. NCBI nr
Match: XP_022972044.1 (uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 187 bits (474), Expect = 1.69e-58
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 4   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 63

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 100
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 64  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI 103

[Close]

BLAST of Cp4.1LG04g09640 vs. NCBI nr
Match: XP_004150019.1 (uncharacterized protein At2g34160 [Cucumis sativus] >XP_008444017.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >XP_022144816.1 uncharacterized protein At2g34160-like [Momordica charantia] >XP_038878653.1 uncharacterized protein At2g34160-like [Benincasa hispida] >KAA0046788.1 Alba domain-containing protein [Cucumis melo var. makuwa] >KGN65316.1 hypothetical protein Csa_020079 [Cucumis sativus] >TYK29659.1 Alba domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 6.23e-58
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 100
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. ExPASy TrEMBL
Match: A0A6J1JBM4 (uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC111485305 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 7.42e-59
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 100
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. ExPASy TrEMBL
Match: A0A6J1HAY2 (uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC111461689 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 7.42e-59
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 100
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. ExPASy TrEMBL
Match: A0A6J1E9X3 (uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC111432111 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 7.42e-59
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 100
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. ExPASy TrEMBL
Match: A0A6J1IAB5 (uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC111470691 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 8.17e-59
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 4   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 63

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 100
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 64  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI 103

[Close]

BLAST of Cp4.1LG04g09640 vs. ExPASy TrEMBL
Match: A0A5A7TV88 (Alba domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00010 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 3.02e-58
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 100
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-43
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVN++ L  D+QKKNRIQVSNTKKPLFFYVNLAKRYMQQY +VELSALGMAIAT
Sbjct: 1   MEEITEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 101
           VVTVAEILKNNG A+EKKIMTSTVDIKDDSRGRPVQKAK+
Sbjct: 61  VVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 171.8 bits (434), Expect = 3.5e-43
Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEIT+GVN++ L  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKV 101
           VVTV EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAK+
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKI 100

[Close]

BLAST of Cp4.1LG04g09640 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-32
Identity = 67/87 (77.01%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 14  TADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGL 73
           T ++ KKNRIQVSNTKKPLFFYVNLAKRY+QQ+NEVELSALGMAI TVVT++EILKNNGL
Sbjct: 31  TVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGL 90

Query: 74  ALEKKIMTSTVDIKDDSRGRPVQKAKV 101
           A EKK++TSTV +KD+++G+ VQKAK+
Sbjct: 91  ATEKKVLTSTVGMKDETKGKMVQKAKI 117

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g09640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	4.9e-42	88.00	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of Cp4.1LG04g09640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022987902.1	1.53e-58	99.00	uncharacterized protein At2g34160-like [Cucurbita maxima] >XP_022987903.1 unchar...	[more]
XP_022924689.1	1.53e-58	99.00	uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023529342.1 unch...	[more]
XP_022961070.1	1.53e-58	99.00	uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023516863.1 unch...	[more]
XP_022972044.1	1.69e-58	99.00	uncharacterized protein At2g34160-like [Cucurbita maxima]	[more]
XP_004150019.1	6.23e-58	98.00	uncharacterized protein At2g34160 [Cucumis sativus] >XP_008444017.1 PREDICTED: u...	[more]

BLAST of Cp4.1LG04g09640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JBM4	7.42e-59	99.00	uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC1114853...	[more]
A0A6J1HAY2	7.42e-59	99.00	uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1E9X3	7.42e-59	99.00	uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1IAB5	8.17e-59	99.00	uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC1114706...	[more]
A0A5A7TV88	3.02e-58	98.00	Alba domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Cp4.1LG04g09640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29250.1	2.7e-43	89.00	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	3.5e-43	88.00	Alba DNA/RNA-binding protein	[more]
AT3G04620.1	1.6e-32	77.01	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 21..74 e-value: 9.6E-13 score: 47.7
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 19..109 e-value: 1.2E-44 score: 152.9
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 20..100
None	No IPR available	PANTHER	PTHR31947:SF20	ALBA DNA/RNA-BINDING PROTEIN	coord: 1..101
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g09640.1	Cp4.1LG04g09640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding