Cp4.1LG04g09290 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g09290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Auxin-responsive protein
Location	Cp4.1LG04: 10120451 .. 10121826 (-)
RNA-Seq Expression	Cp4.1LG04g09290
Synteny	Cp4.1LG04g09290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCCTCGCCCTCGCCACCAACAACCCCACACTTGCTCTTCAATCCCATCCATTTTTTTTTTTTTTTAATATTCATCCAATCTTTGTTCTTTTCCTGTTCGGATTTTCTTCCCCCTATCCCTATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCCAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACTGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCGTACGCTCACTTTTCTCTTTTTCATTTCGGATTTTGGCTGATTTCTTCGGCTGAATTTCTTTGGTTTACTTGACAGAGACGACGAGGAAGAGGATGAAGAGGAAAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGCGGGTTGAATTGGAATTGGAATTCGAGGTACGTGAAGGTGAAGATGGATGGAGTTGGGATTGGTAGGAAGGTTGATTTGAGCCAATACCATTGTTTTGACGAACTTAGAGCCACTTTGATGAAGATGTTTGGTAAGATTGTTTTCTTATTCCTATTCAGAATAGTGAATTCCGGATGGGTGTGAGTTCGTGTACTGATTTTAGGTTATTTGGAAACAGACGAGATGGACCCCGACCGTCACAGACTCACTTACCAGGATATCGACGGTGACTGGTTACTTGCCGACGACGTAACTTGGAGGTAAAGCTAAATATTCAAAGAAATAACCAATATAAAAAAAATAATTTAAATTTATGGGAAAATCAAAACGTGTCCAATAAATTTATGGGTTTTTTTTTTTTGTCATATTGACAGGAATTTCATCGGAACCGTACAACGGATCAAATTGGAGAAGAACCGTGGCTGAATGAGGGGTTACCGGCGTCGTCGGTAGAGAATCAGATGCCATCTAACTAAAAGAATACATTTTCCCCCCTTTTTTTCTTCTTTAGCCCTTGAAGTTTTAATGACTGTATGTATTATAATATATGGATAAAACTTCAGCTATGACTCGGTAACTTTTTTATTTAACCTGGTTAACTTTAGAGTTTTTAACCTGTCAAGATAATTCGATGAAACTAAAGTAATTTTAAGGTTTGGATGTATATATTATTTAATTACTACAGAACTTGGGCCCTCAGATTGAGAGATTGGGCCACTTATCCATGTGGCCCATACACCATATATTTTTTTCTTATTTATTTATTTTCTATAATA

mRNA sequence

CGCCCTCGCCCTCGCCACCAACAACCCCACACTTGCTCTTCAATCCCATCCATTTTTTTTTTTTTTTAATATTCATCCAATCTTTGTTCTTTTCCTGTTCGGATTTTCTTCCCCCTATCCCTATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCCAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACTGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCAGACGACGAGGAAGAGGATGAAGAGGAAAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGCGGGTTGAATTGGAATTGGAATTCGAGGTACGTGAAGGTGAAGATGGATGGAGTTGGGATTGGTAGGAAGGTTGATTTGAGCCAATACCATTGTTTTGACGAACTTAGAGCCACTTTGATGAAGATGTTTGGTTATTTGGAAACAGACGAGATGGACCCCGACCGTCACAGACTCACTTACCAGGATATCGACGGTGACTGGTTACTTGCCGACGACGTAACTTGGAGGAATTTCATCGGAACCGTACAACGGATCAAATTGGAGAAGAACCGTGGCTGAATGAGGGGTTACCGGCGTCGTCGGTAGAGAATCAGATGCCATCTAACTAAAAGAATACATTTTCCCCCCTTTTTTTCTTCTTTAGCCCTTGAAGTTTTAATGACTGTATGTATTATAATATATGGATAAAACTTCAGCTATGACTCGGTAACTTTTTTATTTAACCTGGTTAACTTTAGAGTTTTTAACCTGTCAAGATAATTCGATGAAACTAAAGTAATTTTAAGGTTTGGATGTATATATTATTTAATTACTACAGAACTTGGGCCCTCAGATTGAGAGATTGGGCCACTTATCCATGTGGCCCATACACCATATATTTTTTTCTTATTTATTTATTTTCTATAATA

Coding sequence (CDS)

ATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCCAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACTGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCAGACGACGAGGAAGAGGATGAAGAGGAAAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGCGGGTTGAATTGGAATTGGAATTCGAGGTACGTGAAGGTGAAGATGGATGGAGTTGGGATTGGTAGGAAGGTTGATTTGAGCCAATACCATTGTTTTGACGAACTTAGAGCCACTTTGATGAAGATGTTTGGTTATTTGGAAACAGACGAGATGGACCCCGACCGTCACAGACTCACTTACCAGGATATCGACGGTGACTGGTTACTTGCCGACGACGTAACTTGGAGGAATTTCATCGGAACCGTACAACGGATCAAATTGGAGAAGAACCGTGGCTGA

Protein sequence

MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWNDHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGGGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHRLTYQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG

Homology

[Close]

BLAST of Cp4.1LG04g09290 vs. ExPASy Swiss-Prot
Match: Q93WC4 (Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-18
Identity = 82/246 (33.33%), Postives = 109/246 (44.31%), Query Frame = 0


Query: 1   MELQLGLSLIPAKP------FDLNNSLLLHDTASCLDLNS-TIRKKRPLHVDPSLAFRRT 60
           MEL LGLSL P K       FDLN    +   ASCL            L       +   
Sbjct: 1   MELDLGLSLSPHKSSKLGFNFDLNKHCAIEGAASCLGTEKLRFEATFGLGNVEENCYMPK 60

Query: 61  LPLLLWNDHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKK------------- 120
             L   N  PN  D+D  +  S S   DDEEE+ E   +VGWPP+K              
Sbjct: 61  QRLFALNGQPNEEDEDPLESES-SIVYDDEEENSE---VVGWPPVKTCMIKYGSYHHRHI 120

Query: 121 RKTRSLMQKRRGRGRPAVNGGGLN--------------WNWNSRYVKVKMDGVGIGRKVD 180
           R         RGR   A+N    N               + +S YVKVKMDGV I RKVD
Sbjct: 121 RNHHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMDGVAIARKVD 180

Query: 181 LSQYHCFDELRATLMKMFGYLETDEMDPDRHRLTYQDIDGDWLLADDVTWRNFIGTVQRI 213
           +  ++ ++ L  +L+ MF   E  + +   +  T+Q  +GDWLL  DVTW+ F  +V RI
Sbjct: 181 IKLFNSYESLTNSLITMFTEYEDCDREDTNYTFTFQGKEGDWLLRGDVTWKIFAESVHRI 240

[Close]

BLAST of Cp4.1LG04g09290 vs. ExPASy Swiss-Prot
Match: Q38829 (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana OX=3702 GN=IAA11 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.1e-16
Identity = 51/147 (34.69%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 91  RLVGWPPLKKRKTRSLMQKRRGRGRPAVN---GGGLNWN-------WNSRYVKVKMDGVG 150
           ++VGWPP++  +  S++ + +       N      +N N        NS +VKV MDG+ 
Sbjct: 88  QVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIP 147

Query: 151 IGRKVDLSQYHCFDELRATLMKMF-------------GYLETD-EMDPDRHR---LTYQD 210
           IGRK+DL+ + C++ L  TL +MF             G++ET  ++ PD      LTY+D
Sbjct: 148 IGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYED 207

[Close]

BLAST of Cp4.1LG04g09290 vs. ExPASy Swiss-Prot
Match: P33078 (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana OX=3702 GN=IAA5 PE=1 SV=3)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-14
Identity = 43/134 (32.09%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 85  EDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGGGLNWNWNSRYVKVKMDGVGIGRK 144
           E  +++++VGWPP+   + ++ +++ +                 S YVKV +DG    RK
Sbjct: 47  EPAKKSQVVGWPPVCSYRRKNSLERTK-----------------SSYVKVSVDGAAFLRK 106

Query: 145 VDLSQYHCFDELRATLMKMFG-YLETDEMDPDRHRL-TYQDIDGDWLLADDVTWRNFIGT 204
           +DL  Y C+ +L + L  +FG Y+  D+   +   +  Y+D DGDW+LA DV W  F+G+
Sbjct: 107 IDLEMYKCYQDLASALQILFGCYINFDDTLKESECVPIYEDKDGDWMLAGDVPWEMFLGS 163

Query: 205 VQRIKLEK---NRG 214
            +R+++ K   NRG
Sbjct: 167 CKRLRIMKRSCNRG 163

[Close]

BLAST of Cp4.1LG04g09290 vs. ExPASy Swiss-Prot
Match: Q5VRR0 (Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA20 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.4e-14
Identity = 74/214 (34.58%), Postives = 101/214 (47.20%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLD-LNSTIRKKRPLHVDPSLAFRRTLPLLLW 60
           MEL+LGL L  A P    +        S LD LNS     R    + +L   +T      
Sbjct: 1   MELELGLRL--ALPSPSPSPATATAAGSELDLLNSAPGSCRKRGFEEALGGFKT------ 60

Query: 61  NDHPNNGDDDDNDPHSASNDSD-DEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAV 120
                  DDD++D +    D D D E   +  +LVGWPP+K       + +RR  G    
Sbjct: 61  -------DDDNDDGNGRGGDGDSDGEMGNKRRKLVGWPPVK------CLHRRRDGG---- 120

Query: 121 NGGGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHR 180
            GGG        YVKVKM+G+ IGRK+DLS    + EL  TL  MF     ++    R R
Sbjct: 121 CGGG--------YVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRR 180

Query: 181 ----LTYQDIDGDWLLADDVTWRNFIGTVQRIKL 209
               +TY+D +GDW+   DV W  F  +V+R+K+
Sbjct: 181 HPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKI 181

[Close]

BLAST of Cp4.1LG04g09290 vs. ExPASy Swiss-Prot
Match: Q8H174 (Auxin-responsive protein IAA31 OS=Arabidopsis thaliana OX=3702 GN=IAA31 PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-13
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 95  WPPLKKRKTRSLMQKRRGRGRPAVNGGGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFD 154
           WPP+K R   +L      +GR  +  G    +  S +VKV M+GV IGRK+DL  +  ++
Sbjct: 48  WPPIKSRLRDTL------KGRRLLRRG----DDTSLFVKVYMEGVPIGRKLDLCVFSGYE 107

Query: 155 ELRATLMKMFG-YLETDEMDPDRHRLTYQDIDGDWLLADDVTWRNFIGTVQRIKLEK 211
            L   L  MF   +     D   H LTY+D DGDW++  D+ W  F+ TV+R+K+ +
Sbjct: 108 SLLENLSHMFDTSIICGNRDRKHHVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154

[Close]

BLAST of Cp4.1LG04g09290 vs. NCBI nr
Match: XP_023529300.1 (auxin-responsive protein IAA29-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 437 bits (1125), Expect = 5.67e-155
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120
           DHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120

Query: 121 GGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHRLT 180
           GGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHRLT
Sbjct: 121 GGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHRLT 180

Query: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 213
           YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 213

[Close]

BLAST of Cp4.1LG04g09290 vs. NCBI nr
Match: XP_022934015.1 (auxin-responsive protein IAA29-like [Cucurbita moschata])

HSP 1 Score: 416 bits (1069), Expect = 1.89e-146
Identity = 206/213 (96.71%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120
           DHPNNGDDDDNDPHSASNDSD+EEE EE+NRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDEEEE-EEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120

Query: 121 GGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHRLT 180
           GGLNWN NSRYVKVKM+GVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPD  RLT
Sbjct: 121 GGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDGQRLT 180

Query: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 213
           YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 212

[Close]

BLAST of Cp4.1LG04g09290 vs. NCBI nr
Match: KAG6587888.1 (Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400 bits (1029), Expect = 1.98e-140
Identity = 201/213 (94.37%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120
           DHPNNGDDDDNDPHSASNDSD+EEE EE+NRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDEEEE-EEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120

Query: 121 GGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHRLT 180
           GGLNWN NSRYVKVKM+GVGIGRKVDLSQYHCFDELRATLMKMF     +EMDPD HRLT
Sbjct: 121 GGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF-----EEMDPDGHRLT 180

Query: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 213
           YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 207

[Close]

BLAST of Cp4.1LG04g09290 vs. NCBI nr
Match: XP_022970300.1 (auxin-responsive protein IAA29-like [Cucurbita maxima])

HSP 1 Score: 395 bits (1016), Expect = 1.90e-138
Identity = 198/213 (92.96%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDL STIRKKRPLHVDPS AFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLTSTIRKKRPLHVDPSSAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120
           DHPNNGDDDDNDPHSASNDSD E+EDEE+NRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSD-EDEDEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120

Query: 121 GGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHRLT 180
           GGLNWN NSRYVKVKM+GVGIGRKVDLSQYHCFD+LRATLMKMF     D+MDPD HRLT
Sbjct: 121 GGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDQLRATLMKMF-----DKMDPDSHRLT 180

Query: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 213
           YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 207

[Close]

BLAST of Cp4.1LG04g09290 vs. NCBI nr
Match: KAG7021773.1 (Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 321 bits (822), Expect = 2.71e-109
Identity = 160/165 (96.97%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120
           DHPNNGDDDDNDPHSASNDSD+EEE EE+NRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDEEEE-EEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120

Query: 121 GGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFG 165
           GGLNWN NSRYVKVKM+GVGIGRKVDLSQYHCFDELRATLMKMFG
Sbjct: 121 GGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFG 164

[Close]

BLAST of Cp4.1LG04g09290 vs. ExPASy TrEMBL
Match: A0A6J1F6G3 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111441247 PE=3 SV=1)

HSP 1 Score: 416 bits (1069), Expect = 9.16e-147
Identity = 206/213 (96.71%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120
           DHPNNGDDDDNDPHSASNDSD+EEE EE+NRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDEEEE-EEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120

Query: 121 GGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHRLT 180
           GGLNWN NSRYVKVKM+GVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPD  RLT
Sbjct: 121 GGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDGQRLT 180

Query: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 213
           YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 212

[Close]

BLAST of Cp4.1LG04g09290 vs. ExPASy TrEMBL
Match: A0A6J1I2H3 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111469303 PE=3 SV=1)

HSP 1 Score: 395 bits (1016), Expect = 9.22e-139
Identity = 198/213 (92.96%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDL STIRKKRPLHVDPS AFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLTSTIRKKRPLHVDPSSAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120
           DHPNNGDDDDNDPHSASNDSD E+EDEE+NRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSD-EDEDEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120

Query: 121 GGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHRLT 180
           GGLNWN NSRYVKVKM+GVGIGRKVDLSQYHCFD+LRATLMKMF     D+MDPD HRLT
Sbjct: 121 GGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDQLRATLMKMF-----DKMDPDSHRLT 180

Query: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 213
           YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 207

[Close]

BLAST of Cp4.1LG04g09290 vs. ExPASy TrEMBL
Match: A0A6J1HA19 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461467 PE=3 SV=1)

HSP 1 Score: 247 bits (630), Expect = 1.28e-75
Identity = 143/223 (64.13%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 1   MELQLGLSLIPA---KPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLL 60
           MELQL L+L P    KPFDLN     H    CLD +S  RKKRPL +DPS AFRRTLPLL
Sbjct: 3   MELQLSLALFPTNPTKPFDLNTH---HRALPCLDFDSISRKKRPLDIDPSSAFRRTLPLL 62

Query: 61  LWNDHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRG--- 120
           LWNDHPNNGDDD  +P+SAS++  D  E E+E  LVGWPPLKKR+    +QKR GR    
Sbjct: 63  LWNDHPNNGDDDPKNPNSASSNHPDNPE-EQEIELVGWPPLKKRRKTLFVQKRIGRAVAI 122

Query: 121 -RPAV-NGGG----LNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLE 180
            RPA+ N GG    LN N NSRYVKVKM+GVGIGRKVD+ Q+HC D LRATLM MF    
Sbjct: 123 RRPAMENDGGVYRELNSN-NSRYVKVKMEGVGIGRKVDIRQHHCLDALRATLMNMF---- 182

Query: 181 TDEMDPDRHRLTYQDIDGDWLLADDVTWRNFIGTVQRIKLEKN 211
            D+ D D + LTYQD DGDWLLA+DVTWR+FI TVQRIKLEKN
Sbjct: 183 -DKPDSDGYNLTYQDTDGDWLLAEDVTWRDFIRTVQRIKLEKN 215

[Close]

BLAST of Cp4.1LG04g09290 vs. ExPASy TrEMBL
Match: A0A6J1JF88 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485214 PE=3 SV=1)

HSP 1 Score: 245 bits (626), Expect = 2.79e-74
Identity = 143/223 (64.13%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 1   MELQLGLSLIPA---KPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLL 60
           MELQLGL+L P    KPF LN     H    CLD +S   KKRPL +DPS AFRRTLPLL
Sbjct: 81  MELQLGLALFPTNPTKPFHLNTH---HRALPCLDFDSISGKKRPLDIDPSSAFRRTLPLL 140

Query: 61  LWNDHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRG--- 120
           LWNDHPN+GDDD NDP+SAS++  D  + E+E  LVGWPPLKKR+    +QKR  R    
Sbjct: 141 LWNDHPNDGDDDPNDPNSASSNHPDNPK-EQEIELVGWPPLKKRRKTLFVQKRIRRAVVI 200

Query: 121 -RPAV-NGGG----LNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLE 180
            RPA+ NGGG    LN N NS YVKVKM+GVGIGRKVD+ Q+HCFD LRATLM MF    
Sbjct: 201 RRPAMENGGGVHRELNSN-NSLYVKVKMEGVGIGRKVDIRQHHCFDALRATLMNMF---- 260

Query: 181 TDEMDPDRHRLTYQDIDGDWLLADDVTWRNFIGTVQRIKLEKN 211
            D+ D D + LTYQD DGDWLLADDVTWR+FI TVQRIKLEKN
Sbjct: 261 -DKPDSDGYNLTYQDTDGDWLLADDVTWRDFIRTVQRIKLEKN 293

[Close]

BLAST of Cp4.1LG04g09290 vs. ExPASy TrEMBL
Match: A0A0A0LWC5 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1)

HSP 1 Score: 229 bits (584), Expect = 1.02e-71
Identity = 133/225 (59.11%), Postives = 158/225 (70.22%), Query Frame = 0


Query: 1   MELQLGLSLIPA---KPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLL 60
           MELQLGL+LIP    KPFDLN     ++    L  +S   KKR  H+D    FR+TLPLL
Sbjct: 85  MELQLGLALIPTNPIKPFDLNTH---NNNPISLVFDSINHKKRSRHLDSPATFRQTLPLL 144

Query: 61  LWNDHPNNGDDDD-NDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRG-- 120
           LWNDHPN+GDDDD NDPHSAS++  DEEE EEEN LVGWPPLKKR+    M++  GR   
Sbjct: 145 LWNDHPNDGDDDDPNDPHSASSNDSDEEE-EEENGLVGWPPLKKRRKSLFMKEGVGRRAV 204

Query: 121 --RPAVNGGGLNWNW----NSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLE 180
             RPAV   G+ W      NSRYVKVKM+GVGI RKVDL ++H FD LRATLMKMF    
Sbjct: 205 IRRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMF---- 264

Query: 181 TDEMDPDRHRLTYQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 213
            DE + + ++LT+Q+  G+WLLA++VTWRNFIGTVQRI LEK  G
Sbjct: 265 -DETNSEGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG 300

[Close]

BLAST of Cp4.1LG04g09290 vs. TAIR 10
Match: AT4G32280.1 (indole-3-acetic acid inducible 29 )

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-19
Identity = 82/246 (33.33%), Postives = 109/246 (44.31%), Query Frame = 0


Query: 1   MELQLGLSLIPAKP------FDLNNSLLLHDTASCLDLNS-TIRKKRPLHVDPSLAFRRT 60
           MEL LGLSL P K       FDLN    +   ASCL            L       +   
Sbjct: 1   MELDLGLSLSPHKSSKLGFNFDLNKHCAIEGAASCLGTEKLRFEATFGLGNVEENCYMPK 60

Query: 61  LPLLLWNDHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKK------------- 120
             L   N  PN  D+D  +  S S   DDEEE+ E   +VGWPP+K              
Sbjct: 61  QRLFALNGQPNEEDEDPLESES-SIVYDDEEENSE---VVGWPPVKTCMIKYGSYHHRHI 120

Query: 121 RKTRSLMQKRRGRGRPAVNGGGLN--------------WNWNSRYVKVKMDGVGIGRKVD 180
           R         RGR   A+N    N               + +S YVKVKMDGV I RKVD
Sbjct: 121 RNHHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMDGVAIARKVD 180

Query: 181 LSQYHCFDELRATLMKMFGYLETDEMDPDRHRLTYQDIDGDWLLADDVTWRNFIGTVQRI 213
           +  ++ ++ L  +L+ MF   E  + +   +  T+Q  +GDWLL  DVTW+ F  +V RI
Sbjct: 181 IKLFNSYESLTNSLITMFTEYEDCDREDTNYTFTFQGKEGDWLLRGDVTWKIFAESVHRI 240

[Close]

BLAST of Cp4.1LG04g09290 vs. TAIR 10
Match: AT4G28640.1 (indole-3-acetic acid inducible 11 )

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-17
Identity = 51/147 (34.69%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 91  RLVGWPPLKKRKTRSLMQKRRGRGRPAVN---GGGLNWN-------WNSRYVKVKMDGVG 150
           ++VGWPP++  +  S++ + +       N      +N N        NS +VKV MDG+ 
Sbjct: 88  QVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIP 147

Query: 151 IGRKVDLSQYHCFDELRATLMKMF-------------GYLETD-EMDPDRHR---LTYQD 210
           IGRK+DL+ + C++ L  TL +MF             G++ET  ++ PD      LTY+D
Sbjct: 148 IGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYED 207

[Close]

BLAST of Cp4.1LG04g09290 vs. TAIR 10
Match: AT4G28640.2 (indole-3-acetic acid inducible 11 )

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-17
Identity = 51/147 (34.69%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 91  RLVGWPPLKKRKTRSLMQKRRGRGRPAVN---GGGLNWN-------WNSRYVKVKMDGVG 150
           ++VGWPP++  +  S++ + +       N      +N N        NS +VKV MDG+ 
Sbjct: 88  QVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIP 147

Query: 151 IGRKVDLSQYHCFDELRATLMKMF-------------GYLETD-EMDPDRHR---LTYQD 210
           IGRK+DL+ + C++ L  TL +MF             G++ET  ++ PD      LTY+D
Sbjct: 148 IGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYED 207

[Close]

BLAST of Cp4.1LG04g09290 vs. TAIR 10
Match: AT4G28640.3 (indole-3-acetic acid inducible 11 )

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-17
Identity = 51/147 (34.69%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 91  RLVGWPPLKKRKTRSLMQKRRGRGRPAVN---GGGLNWN-------WNSRYVKVKMDGVG 150
           ++VGWPP++  +  S++ + +       N      +N N        NS +VKV MDG+ 
Sbjct: 88  QVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIP 147

Query: 151 IGRKVDLSQYHCFDELRATLMKMF-------------GYLETD-EMDPDRHR---LTYQD 210
           IGRK+DL+ + C++ L  TL +MF             G++ET  ++ PD      LTY+D
Sbjct: 148 IGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYED 207

[Close]

BLAST of Cp4.1LG04g09290 vs. TAIR 10
Match: AT1G15580.1 (indole-3-acetic acid inducible 5 )

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-15
Identity = 43/134 (32.09%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 85  EDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGGGLNWNWNSRYVKVKMDGVGIGRK 144
           E  +++++VGWPP+   + ++ +++ +                 S YVKV +DG    RK
Sbjct: 47  EPAKKSQVVGWPPVCSYRRKNSLERTK-----------------SSYVKVSVDGAAFLRK 106

Query: 145 VDLSQYHCFDELRATLMKMFG-YLETDEMDPDRHRL-TYQDIDGDWLLADDVTWRNFIGT 204
           +DL  Y C+ +L + L  +FG Y+  D+   +   +  Y+D DGDW+LA DV W  F+G+
Sbjct: 107 IDLEMYKCYQDLASALQILFGCYINFDDTLKESECVPIYEDKDGDWMLAGDVPWEMFLGS 163

Query: 205 VQRIKLEK---NRG 214
            +R+++ K   NRG
Sbjct: 167 CKRLRIMKRSCNRG 163

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g09290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WC4	2.2e-18	33.33	Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=...	[more]
Q38829	6.1e-16	34.69	Auxin-responsive protein IAA11 OS=Arabidopsis thaliana OX=3702 GN=IAA11 PE=1 SV=...	[more]
P33078	2.6e-14	32.09	Auxin-responsive protein IAA5 OS=Arabidopsis thaliana OX=3702 GN=IAA5 PE=1 SV=3	[more]
Q5VRR0	7.4e-14	34.58	Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA20...	[more]
Q8H174	4.8e-13	36.75	Auxin-responsive protein IAA31 OS=Arabidopsis thaliana OX=3702 GN=IAA31 PE=1 SV=...	[more]

BLAST of Cp4.1LG04g09290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529300.1	5.67e-155	100.00	auxin-responsive protein IAA29-like [Cucurbita pepo subsp. pepo]	[more]
XP_022934015.1	1.89e-146	96.71	auxin-responsive protein IAA29-like [Cucurbita moschata]	[more]
KAG6587888.1	1.98e-140	94.37	Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022970300.1	1.90e-138	92.96	auxin-responsive protein IAA29-like [Cucurbita maxima]	[more]
KAG7021773.1	2.71e-109	96.97	Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]

BLAST of Cp4.1LG04g09290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6G3	9.16e-147	96.71	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111441247 PE=3 SV=1	[more]
A0A6J1I2H3	9.22e-139	92.96	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111469303 PE=3 SV=1	[more]
A0A6J1HA19	1.28e-75	64.13	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461467 PE=3 SV=1	[more]
A0A6J1JF88	2.79e-74	64.13	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485214 PE=3 SV=1	[more]
A0A0A0LWC5	1.02e-71	59.11	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1	[more]

BLAST of Cp4.1LG04g09290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32280.1	1.6e-19	33.33	indole-3-acetic acid inducible 29	[more]
AT4G28640.1	4.3e-17	34.69	indole-3-acetic acid inducible 11	[more]
AT4G28640.2	4.3e-17	34.69	indole-3-acetic acid inducible 11	[more]
AT4G28640.3	4.3e-17	34.69	indole-3-acetic acid inducible 11	[more]
AT1G15580.1	1.8e-15	32.09	indole-3-acetic acid inducible 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 69..210 e-value: 1.4E-24 score: 87.3
None	No IPR available	GENE3D	3.10.20.90		coord: 125..213 e-value: 8.7E-25 score: 88.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..90
None	No IPR available	PANTHER	PTHR31734:SF44	AUXIN-RESPONSIVE PROTEIN IAA29	coord: 1..212
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 128..209
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..212
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 129..213 score: 22.909018

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g09290.1	Cp4.1LG04g09290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding