Cp4.1LG04g08750 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g08750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionEukaryotic translation initiation factor 5A
LocationCp4.1LG04: 10444010 .. 10447115 (+)
RNA-Seq ExpressionCp4.1LG04g08750
SyntenyCp4.1LG04g08750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAAAAAAAAAACGCCATGCATGGAAAAAGCGGTACGAAACGGCGATTGGAATGCGGGAGAGAGAAATCCAACGGCCACGATTTCATCTCTCTCAATTTGGAATTTGTGCCTCTGAAAAAGTCTGGAATATTAGAGCGGATTGCTTCGTCGTCTTCAGTAAGGGGACATTGAGGACTGTGCGTGTGACTTCGCGATAGCAACACAGAACAAGGGCCTGAAATCGAGGAGGGACAAACGACGGTGCAGCGATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTTCTTCCTTTTTCTTTTTTCTCCATACCGTTTTGAAACTCGCGTTGATCATCCATGGATTATATTTTGGGCTTTTTTATAATCTTTTTGAGCTTTTCGACTACATTCTTTATTATAATTTTTCTTTTTATCTCTCTGTTTTCTGAAAGGGTAGACGTTTGATTGCTTCGCTTGTTTCGATACTTCTATTTCTAAGTGAAGATGGTCCCTAACTTTTAACTCGGTGACTAATGATTATAGCAATTGTTACTCCCTCATTGATTTAGGTTATTTTCCCCTTTAATTTCTCTCTATGGGGCCTTCTGCTTTTGGATTCCTTCAAGTATTTATAGAATAGTTCTACACAAGTATTGTGGATGAATTATAAAGTAAGTTTTCCTGAAAGGATTTTGGTTGTCCTTTTGGGGCTTTCCCATCCAGGCTTCCCTCCAAATTTTAAAATGTGATCTCACAATAAACTATGGAATAGGTCGTGCAAGATTTGACATAATTGGTTTGGTGTAAGTGCAAGACTGAAAAATTCAGGGTCACGGGTTCATTATCTTTAATGGCAAGTGATTCTTTCACTTCAGTTGGATCAGGATGCGTAATGAAATATGCAGCCTTGGTCTGCCAGAAATGTAGCTTGTGCATGTGTTGTCCTTATTAAGTATTTTGAGATGGACTTGGCTTATTGACTTGTTGAGTTTCGCTATGGGACATGCCGTTAAACAGTTCAGTTGGGTCATGCTGTCATATCCTATATATACCATTATCGCCAATGTCCCTGCTGTGTTGCACATTAAGAAACAATGAGGTAGATGTTAGGCTAAAATGTTAACAGCGGATATAATCTTCATGTTGCAATTATCTTCTTAGTATTAATAGAACTTCTTTGAAGTGCATTAACGATGCTTTGAAAGAAATGTTTTTGAAGGGGATTTGCTTTACTTCTCATTCCCAGATAGAAATGTGCTATATGTCACAATCGCGCTTGTAAGAAATTGTGCGACACTTACTCTCACCATTAAGTGAGTCAGCCAACTCAAAATCGTGTCTCTTTCAGCCGTATGATGTATACTCAAGCCTCTGGCCCCATTTTAAGAAAAAGGTTATAGAAAACGGGGGCCGAAAAAGATTTTAGAGATAGAGTTTGGAAAGAGAGATTGAAAGCAAGATTAGAACCAACGAAGAAAGCAATGTTATAAGCTAGTAAGTAAAGAAGGCAACATAACGGCTTAGATAACATATAACTCTGGGTAGGAAGAATTGATTACGAGTTGCATCTCCTTGTAGTACATTTTAAGACATTTCAGGTTTACTAGACATAGACATTATTTTTCCGAAACGTCATACGCTTAGAAAATACAATAAGAAACTATACATCATGAAAGGGGTAAAGGAAAACAATAAAGTGGTCAACACAAGGGGTTTGACATGCAATGGGCATGTAGCTATGGGCAACTCGCTTTGGACAGACATGACCATAACACTATGCTAGTCTCCTTGTGTTTCTGTCAAAGATGATAATATTGCTGAAATTTTACTCGTGGGCAGCTCATGACTTCCGCTACTTACCAGGGCATATACCATCGGTTTTTTCTTGACTCTCTTCCATTCAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTAATTTCTTTGCAACTCTCTTCTCATGTTTGATTCTATTCTTCCAATGGAACTGTTTTCATTATTCTTCATATTTCGGTGCTTTTGCAGGTTCCCCATGTTAATCGTACTGACTATCAGCTGATTGATATATCTGAGGATGGTTTTGTAAGTTTTAATCATACTTTTACATGATGTCCCCCAGTAGTTATTGTCCTCTTTGGACTTTTCCTTTCGGACTTCCCCTCAAGGTTTTTAAAACGTGTCTGCTAGAGAGAGGTTTCTACACCCTTATAAAAAATGCTTTGTTTTCCTCCCCAGCCGTTGTGATATCTCACAATTGGAATCTTGCAGTCCTTGTAGCATGACGATCTCGAGTCTTGACCGATGGATACATAATTTTGCAGGTCAGTCTGCTTACTGAAAATGGAAACACTAAGGATGACCTGAGGCTTCCCACCGATGATAATCTGCTTACGCAGGTACACATGATGATACAGTTAAGTCATTACTAAGAGCTTTCTGCAATGTCATAAATTGTTTCATTCATTTTCATGTCAATAGCTTAAAGATGGGTTCGCTGAAGGAAAAGATCTTGTTCTAACGGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAAACACAAAGCTTTGGCTACATCTGATGGCTTAAATCCCCTAAACCAAAGTTCTATCAAGTATGTTACATGTAATAAAACTATATTATCAGCACTACTTAAAGCTTAAACACTACTGATCCTTGGACAATGCCGAAAGGATTGGATACATATTTACTTATAAAACTGCATGTTGACAACGTATCATTTGAACTCTTTGGAGTTTGCCAAAGATCTTGGAATCCGCTTGTTCAGGTTGTCAGCCTGAAATGAAATAGGAAGATAAACGAACGTTTTTGCTGTTCATCTGGTCTCTTTTCCCTTTATTCTTTCATATAAAGGTTATTGTTAAGTGCATTTTAGGCCATGAGTGGCTGTTGTTTC

mRNA sequence

TAAAAAAAAAAAACGCCATGCATGGAAAAAGCGGTACGAAACGGCGATTGGAATGCGGGAGAGAGAAATCCAACGGCCACGATTTCATCTCTCTCAATTTGGAATTTGTGCCTCTGAAAAAGTCTGGAATATTAGAGCGGATTGCTTCGTCGTCTTCAGTAAGGGGACATTGAGGACTGTGCGTGTGACTTCGCGATAGCAACACAGAACAAGGGCCTGAAATCGAGGAGGGACAAACGACGGTGCAGCGATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTCAGTCTGCTTACTGAAAATGGAAACACTAAGGATGACCTGAGGCTTCCCACCGATGATAATCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGAAAAGATCTTGTTCTAACGGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAAACACAAAGCTTTGGCTACATCTGATGGCTTAAATCCCCTAAACCAAAGTTCTATCAAGTATGTTACATGTAATAAAACTATATTATCAGCACTACTTAAAGCTTAAACACTACTGATCCTTGGACAATGCCGAAAGGATTGGATACATATTTACTTATAAAACTGCATGTTGACAACGTATCATTTGAACTCTTTGGAGTTTGCCAAAGATCTTGGAATCCGCTTGTTCAGGTTGTCAGCCTGAAATGAAATAGGAAGATAAACGAACGTTTTTGCTGTTCATCTGGTCTCTTTTCCCTTTATTCTTTCATATAAAGGTTATTGTTAAGTGCATTTTAGGCCATGAGTGGCTGTTGTTTC

Coding sequence (CDS)

ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTCAGTCTGCTTACTGAAAATGGAAACACTAAGGATGACCTGAGGCTTCCCACCGATGATAATCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGAAAAGATCTTGTTCTAACGGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAA

Protein sequence

MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG
Homology
[Close]
BLAST of Cp4.1LG04g08750 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-71
Identity = 134/159 (84.28%), Postives = 140/159 (88.05%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH F+SKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPH----------------VSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPH                VSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 144
           DNLLTQ+KDGFAEGKDLV++VMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-71
Identity = 132/159 (83.02%), Postives = 141/159 (88.68%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKTFPQQAGTIRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPH----------------VSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPH                VSLLTE GNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 144
           +NLL+Q+KDGFAEGKDLV++VMSAMGEE+IC+LKDIGPK
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.4e-71
Identity = 132/159 (83.02%), Postives = 139/159 (87.42%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPH----------------VSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPH                VSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 144
           DNLL  +KDGFAEGKDLVL+VMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.4e-71
Identity = 132/159 (83.02%), Postives = 139/159 (87.42%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPH----------------VSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPH                VSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 144
           DNLL  +KDGFAEGKDLVL+VMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. ExPASy Swiss-Prot
Match: P56337 (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-70
Identity = 132/159 (83.02%), Postives = 139/159 (87.42%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAGTIRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPH----------------VSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPH                VSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 144
           D LL Q+KDGFAEGKDLVL+VMSAMGEEQIC +KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. NCBI nr
Match: XP_022930431.1 (eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_022969168.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita maxima] >XP_023529298.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita pepo subsp. pepo] >KAG6587824.1 Eukaryotic translation initiation factor 5A-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035679.1 Eukaryotic translation initiation factor 5A-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286 bits (731), Expect = 6.25e-97
Identity = 144/160 (90.00%), Postives = 144/160 (90.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHV----------------SLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHV                SLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG 144
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG 160

[Close]
BLAST of Cp4.1LG04g08750 vs. NCBI nr
Match: XP_008443857.1 (PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo] >XP_038880020.1 eukaryotic translation initiation factor 5A-2 [Benincasa hispida] >KAA0035077.1 eukaryotic translation initiation factor 5A-2 [Cucumis melo var. makuwa] >TYK03602.1 eukaryotic translation initiation factor 5A-2 [Cucumis melo var. makuwa])

HSP 1 Score: 283 bits (725), Expect = 5.14e-96
Identity = 143/159 (89.94%), Postives = 143/159 (89.94%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHV----------------SLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHV                SLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 143
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. NCBI nr
Match: XP_022135162.1 (eukaryotic translation initiation factor 5A-2-like [Momordica charantia])

HSP 1 Score: 282 bits (722), Expect = 1.47e-95
Identity = 142/159 (89.31%), Postives = 143/159 (89.94%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHV----------------SLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHV                SLLTENGNTKDDL+LPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 143
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. NCBI nr
Match: XP_004146682.1 (eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN65160.1 hypothetical protein Csa_019565 [Cucumis sativus])

HSP 1 Score: 281 bits (720), Expect = 2.97e-95
Identity = 142/159 (89.31%), Postives = 142/159 (89.31%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHV----------------SLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHV                SLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 143
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. NCBI nr
Match: XP_007011943.1 (PREDICTED: eukaryotic translation initiation factor 5A [Theobroma cacao] >XP_012071499.1 eukaryotic translation initiation factor 5A [Jatropha curcas] >EOY29562.1 Eukaryotic translation initiation factor 5A-1 [Theobroma cacao] >KDP38674.1 hypothetical protein JCGZ_04027 [Jatropha curcas])

HSP 1 Score: 277 bits (708), Expect = 2.01e-93
Identity = 138/159 (86.79%), Postives = 142/159 (89.31%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHV----------------SLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHV                SLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 143
           +NLL+Q+KDGFAEGKDLV+TVMSAMGEEQICALKDIGPK
Sbjct: 121 ENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. ExPASy TrEMBL
Match: A0A6J1I076 (Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC111468243 PE=3 SV=1)

HSP 1 Score: 286 bits (731), Expect = 3.03e-97
Identity = 144/160 (90.00%), Postives = 144/160 (90.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHV----------------SLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHV                SLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG 144
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG 160

[Close]
BLAST of Cp4.1LG04g08750 vs. ExPASy TrEMBL
Match: A0A6J1EQX3 (Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC111436878 PE=3 SV=1)

HSP 1 Score: 286 bits (731), Expect = 3.03e-97
Identity = 144/160 (90.00%), Postives = 144/160 (90.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHV----------------SLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHV                SLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG 144
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG 160

[Close]
BLAST of Cp4.1LG04g08750 vs. ExPASy TrEMBL
Match: A0A5A7T0H1 (Eukaryotic translation initiation factor 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00200 PE=3 SV=1)

HSP 1 Score: 283 bits (725), Expect = 2.49e-96
Identity = 143/159 (89.94%), Postives = 143/159 (89.94%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHV----------------SLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHV                SLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 143
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. ExPASy TrEMBL
Match: A0A1S3B9T8 (Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103487352 PE=3 SV=1)

HSP 1 Score: 283 bits (725), Expect = 2.49e-96
Identity = 143/159 (89.94%), Postives = 143/159 (89.94%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHV----------------SLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHV                SLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 143
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. ExPASy TrEMBL
Match: A0A6J1C1W6 (Eukaryotic translation initiation factor 5A OS=Momordica charantia OX=3673 GN=LOC111007197 PE=3 SV=1)

HSP 1 Score: 282 bits (722), Expect = 7.13e-96
Identity = 142/159 (89.31%), Postives = 143/159 (89.94%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHV----------------SLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHV                SLLTENGNTKDDL+LPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 143
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG04g08750 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 245.7 bits (626), Expect = 2.2e-65
Identity = 124/159 (77.99%), Postives = 134/159 (84.28%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+S +DAGASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPH----------------VSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPH                VSLLT+NG+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 144
           D LL Q+K GF +GKDLV++VMSAMGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]
BLAST of Cp4.1LG04g08750 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 241.5 bits (615), Expect = 4.2e-64
Identity = 119/159 (74.84%), Postives = 135/159 (84.91%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF+S +DAGASKT+PQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPH----------------VSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPH                VSLLT+NG+TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 144
           + LLTQLK+GF EGKD+V++VMSAMGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]
BLAST of Cp4.1LG04g08750 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 224.2 bits (570), Expect = 6.9e-59
Identity = 109/157 (69.43%), Postives = 129/157 (82.17%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF++ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPH----------------VSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPH                VSLLT++G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIG 142
           D L  Q++ GF EGKD+V++VMS+MGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]
BLAST of Cp4.1LG04g08750 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 181.0 bits (458), Expect = 6.7e-46
Identity = 90/127 (70.87%), Postives = 101/127 (79.53%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF++ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPH----------------VSLLTENGNTKDDLRLPTD 112
           VAIDIF  KKLEDIVPSSHNCDVPH                VSLLT++G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g08750 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P249222.0e-7184.28Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40... [more]
Q9AXJ42.0e-7183.02Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV... [more]
P690393.4e-7183.02Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40... [more]
P690403.4e-7183.02Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI... [more]
P563371.0e-7083.02Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI... [more]
BLAST of Cp4.1LG04g08750 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022930431.16.25e-9790.00eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_0229... [more]
XP_008443857.15.14e-9689.94PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo] >XP_0388... [more]
XP_022135162.11.47e-9589.31eukaryotic translation initiation factor 5A-2-like [Momordica charantia][more]
XP_004146682.12.97e-9589.31eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN65160.1 hypo... [more]
XP_007011943.12.01e-9386.79PREDICTED: eukaryotic translation initiation factor 5A [Theobroma cacao] >XP_012... [more]
BLAST of Cp4.1LG04g08750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I0763.03e-9790.00Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1EQX33.03e-9790.00Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A5A7T0H12.49e-9689.94Eukaryotic translation initiation factor 5A OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3B9T82.49e-9689.94Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103487... [more]
A0A6J1C1W67.13e-9689.31Eukaryotic translation initiation factor 5A OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of Cp4.1LG04g08750 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G13950.12.2e-6577.99eukaryotic elongation factor 5A-1 [more]
AT1G69410.14.2e-6474.84eukaryotic elongation factor 5A-3 [more]
AT1G26630.16.9e-5969.43Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [more]
AT1G26630.26.7e-4670.87Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 80..138
e-value: 4.5E-13
score: 59.4
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 85..138
e-value: 8.8E-18
score: 64.2
NoneNo IPR availableGENE3D2.40.50.140coord: 82..143
e-value: 2.1E-23
score: 84.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR11673:SF42BNAA07G09420D PROTEINcoord: 1..140
IPR001884Translation elongation factor IF5A-likeTIGRFAMTIGR00037TIGR00037coord: 18..86
e-value: 8.9E-27
score: 91.4
IPR001884Translation elongation factor IF5A-likePIRSFPIRSF003025Transl_init_eIF5Acoord: 1..141
e-value: 1.3E-50
score: 168.8
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A FAMILY MEMBERcoord: 1..140
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..81
e-value: 4.2E-43
score: 147.1
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 15..87
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 82..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g08750.1Cp4.1LG04g08750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006413 translational initiation
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding