Cp4.1LG04g08680 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g08680
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Nucleoid-associated protein
Location	Cp4.1LG04: 10465623 .. 10470171 (-)
RNA-Seq Expression	Cp4.1LG04g08680
Synteny	Cp4.1LG04g08680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATTATATCAAAAAACACGTGGAACTTGTTCATTGGTCTGTCTTCACGAAGTATATGCAGCAGGTGATGTTTGGGGCTTTTGGGCGTGGTTCTCCGAGGCGAAAATCTACTTTATAGTTTATCCTCTCGAGTTTCTCCTCGGCACGTTCACAGCTTTGGGCAATGGCATCGACAATTGCAATCAGTGCTCAAGTACCAAATCTGCGAGGAATTTCTGATTGGAAAAAACGAAGTTAGTACACCATTTGAACCTTTTCATTTTCTTTTGGTTGCTTAGACAGTAGGAAATTGAGGACTATATTTGAGATTGATTGTTATGTCTCTGAATAGAACTGGTTGTTTGGAACTTGGATCTGTATTGTATGTTACGTAGCTATCTCACAACCACTCAATCAAACGGAGGGATCTAAGTTGGTGCGTTTGGTTGGTATGGCATAGTTCATTGGGAAGATCTACCGTTCGCTTGAAGTTTAGACCTAAAATAAAGCTATCTGGTGGTGTCCTCAGTGCATATTATTGAATGGGTTTGGCTCATTTCCTATTAGGAATTATTGTTTGCTTTGTAAAATCAAAGTAAATGTGTGATTGATGAATGGGAGATTCGATTCACATGAACTTGATGGTAGATGCGTTATGTGTATAGTTTTGTATAAAGATTATGAAAGAAAAAGGCTGTGGTCTGGAAAGTTAACGTAAAAACTGTCTAATAAGTTTGGATGAGCCTCAAAACTCTTTAGCACCAGGCTCAACTGCAAGATTATCCACCTTAAAAACTGCTCATAGAAAAGGAATTGCATGAACCAATGAGTTGTAGCCTAGACTGAAGCCGGTTGCATACCTGATAATGTGAAAGTCAGAATTGAATAAATCCCGTCTACTTCATTATAACTCTTAACAAGCTATATTAACGTTGTATGACTTAGAATTTAGTGGTTTGATTTTTATAATTTCGAATATAATACTTTGGGCAATAGAAATTTGTGTGCAGCTGCAAAGTCCTCGTTTATTTCCAAATTTTCATTCTGAAATTGTAGATTAAGTCCACTTTTTGAGACAATTGATTGTACACATTACCTATTAATATATAATTTATCCTTTTCTGGCTGCCTCTTACAGGTAACCTTAATTCAATGTCAAAGATAATTGGCACTCGGATCTCACCTTACCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTGTGGCCTATTTGGAGGGAAAAAGGAGAATGAGGAGAAGAGCGATGATGCACCTTCAAAGGTAGAATTTTGTTTTGCAATATGATTAAACTGTATAAGTTTTGATACCATGCACAATAAAATTGTCATTTCAGTAATTTAGAGACCAAATATAAATGTCTCTCAAAGTTGAGGGACTGTAAGTGACTTTTCCTTGATAGCCAAGTGAGACTATCGTTTCTTACATGCCAACTTTTTGTAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAGACTGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGCGTACAAAAGGAACTTGCGGTGTATGACTAAGCAAGCTAAATAGATGTATTGTCACTTGAAGATGTTTCTCTGTTTTATGAAGTTTGAACTTTTTTTCCTTCTGTGTTTCTGTTCTACAGGGCAGAGTTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTATGTTCAGCCTTTCTCTTTTGCATCAAGTTCATTTTCACTTTGCCCATAACTATGGGATTATAATGGTTGTTTGTGAAGTGAACGTGTGTTAGAATTTTGCTTAAGATTGTAAAATACTTTTCACCTCTTGATTTTAGGTCGCTAGTAATTAGTAAATAAGTACAGATACCTGATACTTGTTTTTATTAATATTGCGTTTGTTGTAGGTGTTACTTAGAGGGAGAAACAGGTCTTGAATTTGTGATTACCAATTTTTCTTTCTTGTTTTAAGATGATGAGTGAATCCAATTTTTCTTTCTTGTTTTGTGATTACCAATATTCAACCTGGTCGATGTGGACTTAAAATCTCTTGGGGCCATCTCCCTCAGGTATTAATTGTTATAAAATATGTGTAGGATCAATTGATAGTTCCAGCGTTTTGATCCCCATGGACATAGAAAGTGAAGTGATTTTTTTTTTCTTGATAAGAAAGGTTTAGGGAATTTCAAAAGAGAGAATCATGATTTATGAAAATAATCAAAGAAGTATTGAGCTCGGGACAAAAGGTTATGGGTTTGACAATTGGGTTCATGCGAGGCTGGACATGGCCTTTTCATTTGATGAGAATTATGATGCTAAAGAATGGGATCATATCATGTTTCCATGTCACATCATATCTGCTTTCATATTTTTTGTCAACTAATTTAGGTGACATTATCCGGAAATCAGCAACCTCTTCGGACGGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAGTGAGTATGCACAATGATGTGATGCACTCTTAACATTTGAAATTGCATTGCTCGCAATAGCATTCTTATATTGAACTTATATTTACATCCTCAAGTCACACCTTAATGCTGCACTACTGTCCTGTCCTCAATCTAAGCTTGGAGATATCTTCTTCAATGTTTGTGCCTAGTGGAATCATGACTAACACATCATGAATTTGAAAATTGGCTGGCCTATAGGACTAGGGTCCGCCTGCTTTGGAACATGTCTCAAAAATAAATTGACAACCATCATTATATTTAAGAATATAGTTGGCAGTAACATTGTAAGAATTGTGTGCTAGGAATTTTCTTTTGTTGTTGTTGTAGAGTAAGAAACCACACTTTCACAGAGAAATTAAAGAATATTTGGAGTATATCCTCTTCAATGTTTGTCTTGTGGAATCATGACTAACACCTCATGAGTTTGAAAATTGGCTGGCCTATAGGACTAGGGTCCGCTTGCTTTGGAACATGGCTAAAAAATAAGTTGACAACCATAATTATATTTAAGAATATTGTTGACAGTAACATTGTAAAAATTGTGTGCTAGGATTTTTTTTTTTTTTTTTTTTTTTTTGGGTAAGACACCATATTGAGAGAAATCAAAGAATATTTATGGACGTATGAATAAACAGGCCCCAAGAAAAAGAACTTGACCTTAACCAAATAAATAACTCCAAAAGTTTTATTATTCCTTTCTATTCAAATATCCCACAAACTTGCAAAGAAACTAGAATGCCACAAAAATTTTCCCTTCTTTCTAAAAGGAGGATTTAGAAGTACCTCCTCCAACCGAGCCTATCCCGAGCCCAACTAACACCATTAAGATTTGTTCCAATAGTAATTAAGATTTCTGATTGTGGTTAATGATGGATATTCCAATTATTTAGAGCTTAACTTTCTTATGCAGAAATTGTCCCTTCTAGTTACTGAAGCATATCAGGACGCACATCAGAAGAGCGTTCAGGTAAGACTTGTTCCTTAGTAATTTAATTTCCAAGTTTTGTATCTATAGAACTGACTGTTGGTCCTCTGATTCTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGTTTGGGTATGCCACAAGGCCTCAGTGAGGGATTGAAGTAAAACCTTTTATGTCTGTCGAGCTTCAGTTTTGTAAATGCAGCGGCAGTGGGACTACGTAATTGTAATCTGACCTTGACAGGAAATTCCATATCAGTTTTTACTGGTGAACTAAATGTTTGGGAACCTTGTTCTCCATCTTTAGATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAACAGCTATGATATTTATTGTGGAATCAGAACAAAGAATCAAAAGAATGAAATGAAAGTGAGATTTCAAATTGGAATCTACTTTAGAAACGATATCGACTATCATTTCGGTTTGTTGAAAGGAAAAGATATTTGACAATATGTGGACATCTGATTTCTTGAAAAGAAAAAGCTGTAAACTTCTACTTGACACAAGGTAATCAATCACCAACAAACGTTAGTAAAATAATCTTAGTTCAACCTTGTCATCTGCGTACTTGAAATGGGTGATAACATTGGCATGGTCTAACCAATATTAATTGTAGAATGAATACAATTCTAGCTCACTCTCAGCACTGTTCTGTACTGGAATTATGGTAATTAATGACAGGTATCTAGAAACGAGACTAACGAACAGTTTCTTGTCTCTGTTCATTGATCTGTTTCTTTGCAGGTAAATCAATATTTTGGCAATTGTTTTCCTGATAGAAACGCTCTGAAAAGTGTCAAAGCTCTCTGTGGTTGGATCAATGGAACCTCATGTCCAGCTCCTCTCACTGTGGCAAAGGTCAGCCCTTCATAAACCTCTGTCCGTCCCCCGACCTGCCATGTCCATTTCATTTTGTTTAAAGCATTTCATTCAAACGAAGAACAAAAAGGGTAGAGTTTTCATATGTAACCTGTCCTCTAGAATACCATGGATACCAGCGAGTTTTAATAGGAAGGTTGAGATGGTTGAGGGCGAATCTGGTGGCTGTCACTGGTACCACCGAATCTGTATCTCCACTG

mRNA sequence

TATATTATATCAAAAAACACGTGGAACTTGTTCATTGGTCTGTCTTCACGAAGTATATGCAGCAGGTGATGTTTGGGGCTTTTGGGCGTGGTTCTCCGAGGCGAAAATCTACTTTATAGTTTATCCTCTCGAGTTTCTCCTCGGCACGTTCACAGCTTTGGGCAATGGCATCGACAATTGCAATCAGTGCTCAAGTACCAAATCTGCGAGGAATTTCTGATTGGAAAAAACGAAGTAACCTTAATTCAATGTCAAAGATAATTGGCACTCGGATCTCACCTTACCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTGTGGCCTATTTGGAGGGAAAAAGGAGAATGAGGAGAAGAGCGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAGACTGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGCGTACAAAAGGAACTTGCGGTGGCAGAGTTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGAAATCAGCAACCTCTTCGGACGGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAATTGTCCCTTCTAGTTACTGAAGCATATCAGGACGCACATCAGAAGAGCGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGTTTGGGTATGCCACAAGGCCTCAGTGAGGGATTGAAGTAAAACCTTTTATGTCTGTCGAGCTTCAGTTTTGTAAATGCAGCGGCAGTGGGACTACGTAATTGTAATCTGACCTTGACAGGAAATTCCATATCAGTTTTTACTGGTGAACTAAATGTTTGGGAACCTTGTTCTCCATCTTTAGATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAACAGCTATGATATTTATTGTGGAATCAGAACAAAGAATCAAAAGAATGAAATGAAAGTGAGATTTCAAATTGGAATCTACTTTAGAAACGATATCGACTATCATTTCGGTTTGTTGAAAGGAAAAGATATTTGACAATATGTGGACATCTGATTTCTTGAAAAGAAAAAGCTGTAAACTTCTACTTGACACAAGGTAATCAATCACCAACAAACGTTAGTAAAATAATCTTAGTTCAACCTTGTCATCTGCGTACTTGAAATGGGTGATAACATTGGCATGGTCTAACCAATATTAATTGTAGAATGAATACAATTCTAGCTCACTCTCAGCACTGTTCTGTACTGGAATTATGGTAATTAATGACAGGTATCTAGAAACGAGACTAACGAACAGTTTCTTGTCTCTGTTCATTGATCTGTTTCTTTGCAGGTAAATCAATATTTTGGCAATTGTTTTCCTGATAGAAACGCTCTGAAAAGTGTCAAAGCTCTCTGTGGTTGGATCAATGGAACCTCATGTCCAGCTCCTCTCACTGTGGCAAAGGTCAGCCCTTCATAAACCTCTGTCCGTCCCCCGACCTGCCATGTCCATTTCATTTTGTTTAAAGCATTTCATTCAAACGAAGAACAAAAAGGGTAGAGTTTTCATATGTAACCTGTCCTCTAGAATACCATGGATACCAGCGAGTTTTAATAGGAAGGTTGAGATGGTTGAGGGCGAATCTGGTGGCTGTCACTGGTACCACCGAATCTGTATCTCCACTG

Coding sequence (CDS)

ATGGCATCGACAATTGCAATCAGTGCTCAAGTACCAAATCTGCGAGGAATTTCTGATTGGAAAAAACGAAGTAACCTTAATTCAATGTCAAAGATAATTGGCACTCGGATCTCACCTTACCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTGTGGCCTATTTGGAGGGAAAAAGGAGAATGAGGAGAAGAGCGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAGACTGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGCGTACAAAAGGAACTTGCGGTGGCAGAGTTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGAAATCAGCAACCTCTTCGGACGGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAATTGTCCCTTCTAGTTACTGAAGCATATCAGGACGCACATCAGAAGAGCGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGTTTGGGTATGCCACAAGGCCTCAGTGAGGGATTGAAGTAA

Protein sequence

MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYPWKVEKNNRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQGLSEGLK

Homology

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BLAST of Cp4.1LG04g08680 vs. ExPASy Swiss-Prot
Match: O82230 (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STIC2 PE=1 SV=2)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 111/152 (73.03%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 36  RISPYPWKVEKNNRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQ 95
           R  P  +K +   RSL V GLFGG  + +  S+D  SKAGIFGNMQ +YETV+ AQ VVQ
Sbjct: 32  RTWPKQYKSKNGYRSLRVNGLFGGGNK-DNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQ 91

Query: 96  VEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQ 155
           VEAVRVQKELA AEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+
Sbjct: 92  VEAVRVQKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYK 151

Query: 156 DAHQKSVQAMKQRMSDLAQSLGMPQGLSEGLK 188
           DAH KSV AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 152 DAHAKSVVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of Cp4.1LG04g08680 vs. ExPASy Swiss-Prot
Match: Q9M098 (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g30620 PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-51
Identity = 113/142 (79.58%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 47  NNRSLCVCGLF-GGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKEL 106
           NNRSL V GLF GGKK+N+E   D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKEL
Sbjct: 43  NNRSLRVNGLFGGGKKDNKE---DGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKEL 102

Query: 107 AVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAM 166
           AVAEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EKLSLLVTEAY+DAH KSV AM
Sbjct: 103 AVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAM 162

Query: 167 KQRMSDLAQSLGMPQGLSEGLK 188
           K+RMSDLAQSLGMP GL +GLK
Sbjct: 163 KERMSDLAQSLGMPPGL-DGLK 180

[Close]

BLAST of Cp4.1LG04g08680 vs. ExPASy Swiss-Prot
Match: Q5N376 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 78  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEA 137
           G M++L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 138 AMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of Cp4.1LG04g08680 vs. ExPASy Swiss-Prot
Match: Q8GMT0 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 78  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEA 137
           G M++L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 138 AMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of Cp4.1LG04g08680 vs. ExPASy Swiss-Prot
Match: Q8YM73 (Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=alr5067 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-13
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 78  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEA 137
           G M++L E  + AQQ VQ  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  
Sbjct: 13  GKMKELAEAFKKAQQ-VQEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISPD 72

Query: 138 AMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           A+  G + LS LVT A +DA+ KS   M++RM DL   L +P
Sbjct: 73  ALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113

[Close]

BLAST of Cp4.1LG04g08680 vs. NCBI nr
Match: XP_023531577.1 (nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 366 bits (940), Expect = 1.26e-127
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYPWKVEKNNRSLCVCGLFGGK 60
           MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYPWKVEKNNRSLCVCGLFGGK
Sbjct: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYPWKVEKNNRSLCVCGLFGGK 60

Query: 61  KENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIK 120
           KENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIK
Sbjct: 61  KENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 187
           GLSEGLK
Sbjct: 181 GLSEGLK 187

[Close]

BLAST of Cp4.1LG04g08680 vs. NCBI nr
Match: XP_022932159.1 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022965200.1 nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 360 bits (925), Expect = 2.52e-125
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY-PWKVEKNNRSLCVCGLFGG 60
           MASTI+ISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY PWKVEKNNRSLCVCGLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 187
           QGLSEGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of Cp4.1LG04g08680 vs. NCBI nr
Match: KAG6587818.1 (Nucleoid-associated protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 358 bits (919), Expect = 2.07e-124
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY-PWKVEKNNRSLCVCGLFGG 60
           MASTI+ISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY PWKVEKN RSLCVCGLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNKRSLCVCGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 187
           QGLSEGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of Cp4.1LG04g08680 vs. NCBI nr
Match: KAG7035685.1 (Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 348 bits (892), Expect = 2.36e-120
Identity = 181/187 (96.79%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYPWKVEKNNRSLCVCGLFGGK 60
           MASTI+ISAQVPNLRGISDWKKRSNLNSMSKIIGTR    PWKVEKN RSLCVCGLFGGK
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTR---GPWKVEKNKRSLCVCGLFGGK 60

Query: 61  KENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIK 120
           KENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIK
Sbjct: 61  KENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 187
           GLSEGLK
Sbjct: 181 GLSEGLK 184

[Close]

BLAST of Cp4.1LG04g08680 vs. NCBI nr
Match: KAG7023441.1 (Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339 bits (870), Expect = 6.13e-117
Identity = 175/188 (93.09%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY-PWKVEKNNRSLCVCGLFGG 60
           MASTI++SAQVPNLRGISD KKRSNLNSMS I+G RISPY PWKVEKN+RSLCVCGLFGG
Sbjct: 1   MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KKEN EKSDDAPSKAGIFGNMQ LYETVRTAQQVVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAY+DAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 187
           QGL EGLK
Sbjct: 181 QGLGEGLK 188

[Close]

BLAST of Cp4.1LG04g08680 vs. ExPASy TrEMBL
Match: A0A6J1HN29 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465126 PE=4 SV=1)

HSP 1 Score: 360 bits (925), Expect = 1.22e-125
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY-PWKVEKNNRSLCVCGLFGG 60
           MASTI+ISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY PWKVEKNNRSLCVCGLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 187
           QGLSEGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of Cp4.1LG04g08680 vs. ExPASy TrEMBL
Match: A0A6J1EW88 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438476 PE=4 SV=1)

HSP 1 Score: 360 bits (925), Expect = 1.22e-125
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY-PWKVEKNNRSLCVCGLFGG 60
           MASTI+ISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY PWKVEKNNRSLCVCGLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 187
           QGLSEGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of Cp4.1LG04g08680 vs. ExPASy TrEMBL
Match: A0A6J1JDG0 (nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111485791 PE=4 SV=1)

HSP 1 Score: 335 bits (860), Expect = 9.92e-116
Identity = 173/188 (92.02%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY-PWKVEKNNRSLCVCGLFGG 60
           MASTI++SAQVPNLRGIS  KKR+NLNSMS I+G RISPY PWKVEKN+RSLCVCGLFGG
Sbjct: 1   MASTISLSAQVPNLRGISGLKKRNNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KKEN EKSDDAPSKAGIFGNMQ LYETVRTAQQVVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAY+DAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 187
           QGL EGLK
Sbjct: 181 QGLGEGLK 188

[Close]

BLAST of Cp4.1LG04g08680 vs. ExPASy TrEMBL
Match: A0A6J1E6N9 (nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429899 PE=4 SV=1)

HSP 1 Score: 332 bits (851), Expect = 2.26e-114
Identity = 173/188 (92.02%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY-PWKVEKNNRSLCVCGLFGG 60
           MASTI++SAQ+PNLRGISD KKRSNLNSMS I+G RISPY PWKVEKN+RSLCVCGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KKEN EK DDAPSKAGIFGNMQ LYETVRTAQQVVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENGEK-DDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAY+DAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 187
           QGL EGLK
Sbjct: 181 QGLGEGLK 187

[Close]

BLAST of Cp4.1LG04g08680 vs. ExPASy TrEMBL
Match: A0A0A0LWF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1)

HSP 1 Score: 331 bits (849), Expect = 4.55e-114
Identity = 172/188 (91.49%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPY-PWKVEKNNRSLCVCGLFGG 60
           MASTI++SAQ+PNLRGISD+KKRSNLNSMS I+GTR+SPY PWKVEKNNRSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KK+ EEKSDDAPSKAGIFGNMQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAYQDAHQKSV AMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 187
           QGLSEGLK
Sbjct: 181 QGLSEGLK 187

[Close]

BLAST of Cp4.1LG04g08680 vs. TAIR 10
Match: AT2G24020.1 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 111/152 (73.03%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 36  RISPYPWKVEKNNRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQ 95
           R  P  +K +   RSL V GLFGG  + +  S+D  SKAGIFGNMQ +YETV+ AQ VVQ
Sbjct: 32  RTWPKQYKSKNGYRSLRVNGLFGGGNK-DNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQ 91

Query: 96  VEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQ 155
           VEAVRVQKELA AEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+
Sbjct: 92  VEAVRVQKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYK 151

Query: 156 DAHQKSVQAMKQRMSDLAQSLGMPQGLSEGLK 188
           DAH KSV AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 152 DAHAKSVVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of Cp4.1LG04g08680 vs. TAIR 10
Match: AT2G24020.2 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 111/152 (73.03%), Postives = 125/152 (82.24%), Query Frame = 0


Query: 36  RISPYPWKVEKNNRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQ 95
           R  P  +K +   RSL V GLFGG  + +  S+D  SKAGIFGNMQ +YETV+ AQ VVQ
Sbjct: 30  RTWPKQYKSKNGYRSLRVNGLFGGGNK-DNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQ 89

Query: 96  VEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQ 155
           VEAVRVQKELA AEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+
Sbjct: 90  VEAVRVQKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYK 149

Query: 156 DAHQKSVQAMKQRMSDLAQSLGMPQGLSEGLK 188
           DAH KSV AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 150 DAHAKSVVAMKERMSDLAQSLGMPPGLSEGMK 180

[Close]

BLAST of Cp4.1LG04g08680 vs. TAIR 10
Match: AT4G30620.1 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 204.5 bits (519), Expect = 7.3e-53
Identity = 113/142 (79.58%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 47  NNRSLCVCGLF-GGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKEL 106
           NNRSL V GLF GGKK+N+E   D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKEL
Sbjct: 43  NNRSLRVNGLFGGGKKDNKE---DGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKEL 102

Query: 107 AVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAM 166
           AVAEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EKLSLLVTEAY+DAH KSV AM
Sbjct: 103 AVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAM 162

Query: 167 KQRMSDLAQSLGMPQGLSEGLK 188
           K+RMSDLAQSLGMP GL +GLK
Sbjct: 163 KERMSDLAQSLGMPPGL-DGLK 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g08680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82230	2.7e-52	73.03	Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q9M098	1.0e-51	79.58	Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q5N376	1.7e-14	47.06	Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / ...	[more]
Q8GMT0	1.7e-14	47.06	Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain P...	[more]
Q8YM73	4.2e-13	46.08	Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 /...	[more]

BLAST of Cp4.1LG04g08680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531577.1	1.26e-127	100.00	nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp....	[more]
XP_022932159.1	2.52e-125	98.94	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita ...	[more]
KAG6587818.1	2.07e-124	98.40	Nucleoid-associated protein, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
KAG7035685.1	2.36e-120	96.79	Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7023441.1	6.13e-117	93.09	Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG04g08680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HN29	1.22e-125	98.94	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbit...	[more]
A0A6J1EW88	1.22e-125	98.94	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbit...	[more]
A0A6J1JDG0	9.92e-116	92.02	nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucurbita maxima OX...	[more]
A0A6J1E6N9	2.26e-114	92.02	nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucurbita moschata ...	[more]
A0A0A0LWF8	4.55e-114	91.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g08680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24020.1	1.9e-53	73.03	Uncharacterised BCR, YbaB family COG0718	[more]
AT2G24020.2	1.9e-53	73.03	Uncharacterised BCR, YbaB family COG0718	[more]
AT4G30620.1	7.3e-53	79.58	Uncharacterised BCR, YbaB family COG0718	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	GENE3D	3.30.1310.10		coord: 76..184 e-value: 1.3E-30 score: 107.6
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	SUPERFAMILY	82607	YbaB-like	coord: 92..180
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PFAM	PF02575	YbaB_DNA_bd	coord: 91..175 e-value: 1.4E-16 score: 60.5
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PANTHER	PTHR33449	NUCLEOID-ASSOCIATED PROTEIN YBAB	coord: 5..187
None	No IPR available	PANTHER	PTHR33449:SF6	SUBFAMILY NOT NAMED	coord: 5..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g08680.1	Cp4.1LG04g08680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding