Cp4.1LG04g08150 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g08150
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	type IV secretion system protein virB10-like
Location	Cp4.1LG04: 3310529 .. 3310924 (-)
RNA-Seq Expression	Cp4.1LG04g08150
Synteny	Cp4.1LG04g08150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGTTCCCCTCGACCAGCTCCAACCCCCGCCCTCTGCCGCCGCTATCCACCCTGCCCAGGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCCGTGATTTCCATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGCCGTCCCGTTTTTGGCTACAACGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCTCCACCAATCGAAGCTATTCCGGTGGCGGAGCCGCTTGGTGGGCCGCCGAACATCAAGGAAGGTGGCGATGGCGATGGCGACAGGGAACGCGAGAATTTGCAGTCGGTGCCTCCCGGCAGTGGCGGTGAGTCGTGA

mRNA sequence

ATGTCCGTTCCCCTCGACCAGCTCCAACCCCCGCCCTCTGCCGCCGCTATCCACCCTGCCCAGGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCCGTGATTTCCATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGCCGTCCCGTTTTTGGCTACAACGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCTCCACCAATCGAAGCTATTCCGGTGGCGGAGCCGCTTGGTGGGCCGCCGAACATCAAGGAAGGTGGCGATGGCGATGGCGACAGGGAACGCGAGAATTTGCAGTCGGTGCCTCCCGGCAGTGGCGGTGAGTCGTGA

Coding sequence (CDS)

ATGTCCGTTCCCCTCGACCAGCTCCAACCCCCGCCCTCTGCCGCCGCTATCCACCCTGCCCAGGGCTCCGTCGGCCCCGTCATCGCCGTCCTTGCCGTGATTTCCATCCTCGGCTTCATTGCCGGCATGATCGGCCGCGTCTGCTTTGGCCGTCCCGTTTTTGGCTACAACGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGGTCTCTAGACCCTCCCCCGCATCTCCGCCCCCCTCCACCAATCGAAGCTATTCCGGTGGCGGAGCCGCTTGGTGGGCCGCCGAACATCAAGGAAGGTGGCGATGGCGATGGCGACAGGGAACGCGAGAATTTGCAGTCGGTGCCTCCCGGCAGTGGCGGTGAGTCGTGA

Protein sequence

MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRERENLQSVPPGSGGES

Homology

[Close]

BLAST of Cp4.1LG04g08150 vs. NCBI nr
Match: XP_023530142.1 (uncharacterized protein LOC111792788 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261 bits (668), Expect = 5.19e-88
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY
Sbjct: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRERENL 120
           DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRERENL
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRERENL 120

Query: 121 QSVPPGSGG 129
           QSVPPGSGG
Sbjct: 121 QSVPPGSGG 129

[Close]

BLAST of Cp4.1LG04g08150 vs. NCBI nr
Match: XP_022927713.1 (uncharacterized protein LOC111434531 [Cucurbita moschata])

HSP 1 Score: 248 bits (634), Expect = 7.97e-83
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNA Y
Sbjct: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRERENL 120
           DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPV+EPLGGPPNIKEGGDGD  RERENL
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGD--RERENL 120

Query: 121 QSVPPGSGGES 131
           QSV PGSGGES
Sbjct: 121 QSVAPGSGGES 129

[Close]

BLAST of Cp4.1LG04g08150 vs. NCBI nr
Match: XP_022989510.1 (uncharacterized protein LOC111486567 [Cucurbita maxima])

HSP 1 Score: 248 bits (633), Expect = 1.13e-82
Identity = 125/131 (95.42%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVPLDQLQPPP+AAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY
Sbjct: 1   MSVPLDQLQPPPAAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRERENL 120
           DVEDWVEKKCA+CLDGSLDPPP LRPPPPIEAIPVAEPLGGPPNIKE  DGDGD+ERENL
Sbjct: 61  DVEDWVEKKCATCLDGSLDPPPLLRPPPPIEAIPVAEPLGGPPNIKE--DGDGDKERENL 120

Query: 121 QSVPPGSGGES 131
           QSVPPGSGGES
Sbjct: 121 QSVPPGSGGES 129

[Close]

BLAST of Cp4.1LG04g08150 vs. NCBI nr
Match: KAG6588645.1 (hypothetical protein SDJN03_17210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246 bits (628), Expect = 6.55e-82
Identity = 124/131 (94.66%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVP+DQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY
Sbjct: 1   MSVPVDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRERENL 120
           DVEDWVEKKCA+CLDGSLDPPPHLRPPPPIEAIPV+EPLG PPNIKEGGDGD  RERENL
Sbjct: 61  DVEDWVEKKCATCLDGSLDPPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGD--RERENL 120

Query: 121 QSVPPGSGGES 131
           QSV PGSGGES
Sbjct: 121 QSVAPGSGGES 129

[Close]

BLAST of Cp4.1LG04g08150 vs. NCBI nr
Match: XP_038887147.1 (uncharacterized protein LOC120077337 [Benincasa hispida])

HSP 1 Score: 191 bits (484), Expect = 7.62e-60
Identity = 102/140 (72.86%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MS PLDQLQPPPS   +H A  SVGP+IAVLAVISILG IAGMIGR+C GRPVFGY AHY
Sbjct: 1   MSTPLDQLQPPPS---LHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPP----HLRPPPPIEAIPVAEPLGGPP-NIKEGGDGDG-- 120
           DVEDW+EKKCASCLDGSLDPPP    HLR PP ++++PVAEPLGGPP  IK+G D D   
Sbjct: 61  DVEDWIEKKCASCLDGSLDPPPPPPPHLRRPPLLDSVPVAEPLGGPPPEIKQGADADAVV 120

Query: 121 --DRERENLQSVPPGSGGES 131
             D +RENLQS PPG+GGES
Sbjct: 121 DTDVKRENLQSAPPGTGGES 137

[Close]

BLAST of Cp4.1LG04g08150 vs. ExPASy TrEMBL
Match: A0A6J1ELS6 (uncharacterized protein LOC111434531 OS=Cucurbita moschata OX=3662 GN=LOC111434531 PE=4 SV=1)

HSP 1 Score: 248 bits (634), Expect = 3.86e-83
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNA Y
Sbjct: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRERENL 120
           DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPV+EPLGGPPNIKEGGDGD  RERENL
Sbjct: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGD--RERENL 120

Query: 121 QSVPPGSGGES 131
           QSV PGSGGES
Sbjct: 121 QSVAPGSGGES 129

[Close]

BLAST of Cp4.1LG04g08150 vs. ExPASy TrEMBL
Match: A0A6J1JMK0 (uncharacterized protein LOC111486567 OS=Cucurbita maxima OX=3661 GN=LOC111486567 PE=4 SV=1)

HSP 1 Score: 248 bits (633), Expect = 5.48e-83
Identity = 125/131 (95.42%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MSVPLDQLQPPP+AAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY
Sbjct: 1   MSVPLDQLQPPPAAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRERENL 120
           DVEDWVEKKCA+CLDGSLDPPP LRPPPPIEAIPVAEPLGGPPNIKE  DGDGD+ERENL
Sbjct: 61  DVEDWVEKKCATCLDGSLDPPPLLRPPPPIEAIPVAEPLGGPPNIKE--DGDGDKERENL 120

Query: 121 QSVPPGSGGES 131
           QSVPPGSGGES
Sbjct: 121 QSVPPGSGGES 129

[Close]

BLAST of Cp4.1LG04g08150 vs. ExPASy TrEMBL
Match: A0A6J1IBA8 (uncharacterized protein LOC111470940 OS=Cucurbita maxima OX=3661 GN=LOC111470940 PE=4 SV=1)

HSP 1 Score: 188 bits (478), Expect = 2.75e-59
Identity = 97/132 (73.48%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MS P DQLQPPP+A   H   GSVGPVIAVLAVISILG IAG+IGR+C GRPVFGY AHY
Sbjct: 1   MSTPFDQLQPPPTA---HSGHGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPP---HLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRER 120
           DVE+WVEKKCASCLDGSLDPPP   HLR PPP++A+PV EPLGGPP IK+G D     +R
Sbjct: 61  DVEEWVEKKCASCLDGSLDPPPPPAHLRHPPPLDAVPVVEPLGGPPEIKQGAD----EKR 120

Query: 121 ENLQSVPPGSGG 129
           ENLQS  PG+GG
Sbjct: 121 ENLQSAAPGTGG 125

[Close]

BLAST of Cp4.1LG04g08150 vs. ExPASy TrEMBL
Match: A0A6J1GL66 (uncharacterized protein LOC111455383 OS=Cucurbita moschata OX=3662 GN=LOC111455383 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 8.12e-59
Identity = 97/133 (72.93%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MS P+DQLQPPP+A   H   GSVGPVIAVLAVISILG IAG+IGR+C GRPVFGY AHY
Sbjct: 1   MSTPVDQLQPPPTA---HSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPP----HLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRE 120
           DVE+WVEKKCASCLDGSLDPPP    HLR PPP++A+PV EPLGGPP IK+G D     +
Sbjct: 61  DVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADD----K 120

Query: 121 RENLQSVPPGSGG 129
           RENLQS  PG+GG
Sbjct: 121 RENLQSAAPGTGG 126

[Close]

BLAST of Cp4.1LG04g08150 vs. ExPASy TrEMBL
Match: A0A0A0K6N4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074850 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 2.11e-58
Identity = 96/135 (71.11%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MSVPLDQLQPPPSAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAHY 60
           MS P+DQLQPPP    +H +  SVGP+IAVLAVISILG IAGMIGR+C GRPVFGY AHY
Sbjct: 1   MSTPIDQLQPPPP---LHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHY 60

Query: 61  DVEDWVEKKCASCLDGSLDPPP---HLRPPPPIEAIPVAEPLGGPP-NIKEGGDGDGDRE 120
           D+EDWVEKKCASCLDGSLDPPP   HLR PPP++++PVAEPLGGPP  IK+    D D +
Sbjct: 61  DLEDWVEKKCASCLDGSLDPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQSAHADADAK 120

Query: 121 RENLQSVPPGSGGES 131
            ENLQS  PG+GGES
Sbjct: 121 GENLQSAAPGTGGES 132

[Close]

BLAST of Cp4.1LG04g08150 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 0


Query: 2   SVPLDQLQPPP-------SAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVF 61
           S+PL   QPPP       S++       ++GP IAV  V+++L  +A +IGR+C G+ + 
Sbjct: 3   SMPL-YWQPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTIL 62

Query: 62  GYNAHYDVEDWVEKKCASCLDGSLDPPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGD 121
           GY   YD+E W E +C SC+DG + P      P P    P+     G     EG   D D
Sbjct: 63  GY-GDYDMERWAESRCGSCIDGHIHPHRPSPSPTPPPRQPLHHTSSGVSAESEGHVADLD 122

Query: 122 RE-----RENLQSVPP 126
            E     +++L   PP
Sbjct: 123 HETDGEKQDSLDHEPP 136

[Close]

BLAST of Cp4.1LG04g08150 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-09
Identity = 39/110 (35.45%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 6   DQLQPPPSAAAIHPA----------QGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFG 65
           DQL   P+   I P             S+  ++ VLAVI+IL  +AG+  R+C GR +  
Sbjct: 10  DQLSTTPTTIYIDPPSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHL-S 69

Query: 66  YNAHYDVEDWVEKKCASCLDGSL-------DPPPHLRPPPPIEAIPVAEP 99
           +   +D+E WVE+KC SC+D  +        PPP   PPPP  A   ++P
Sbjct: 70  HGGDHDIEGWVERKCRSCIDAGIPAVSAAPSPPP---PPPPATAEERSKP 115

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g08150 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g08150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530142.1	5.19e-88	100.00	uncharacterized protein LOC111792788 [Cucurbita pepo subsp. pepo]	[more]
XP_022927713.1	7.97e-83	96.18	uncharacterized protein LOC111434531 [Cucurbita moschata]	[more]
XP_022989510.1	1.13e-82	95.42	uncharacterized protein LOC111486567 [Cucurbita maxima]	[more]
KAG6588645.1	6.55e-82	94.66	hypothetical protein SDJN03_17210, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038887147.1	7.62e-60	72.86	uncharacterized protein LOC120077337 [Benincasa hispida]	[more]

BLAST of Cp4.1LG04g08150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ELS6	3.86e-83	96.18	uncharacterized protein LOC111434531 OS=Cucurbita moschata OX=3662 GN=LOC1114345...	[more]
A0A6J1JMK0	5.48e-83	95.42	uncharacterized protein LOC111486567 OS=Cucurbita maxima OX=3661 GN=LOC111486567...	[more]
A0A6J1IBA8	2.75e-59	73.48	uncharacterized protein LOC111470940 OS=Cucurbita maxima OX=3661 GN=LOC111470940...	[more]
A0A6J1GL66	8.12e-59	72.93	uncharacterized protein LOC111455383 OS=Cucurbita moschata OX=3662 GN=LOC1114553...	[more]
A0A0A0K6N4	2.11e-58	71.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074850 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g08150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26520.1	1.7e-11	33.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57500.1	3.5e-09	35.45	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..96
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 1..88
None	No IPR available	PANTHER	PTHR33429:SF2	OS01G0888850 PROTEIN	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g08150.1	Cp4.1LG04g08150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane