Cp4.1LG04g07970 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g07970
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	CBS domain-containing protein CBSX2, chloroplastic
Location	Cp4.1LG04: 3630541 .. 3631911 (+)
RNA-Seq Expression	Cp4.1LG04g07970
Synteny	Cp4.1LG04g07970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTAAAATAAAGTGTGTTTGAAACAGCCTTGGAGGTTCTAGTGGAGAAGAGTCTATCTGGATTTCTTGTAATTGACGACGACTGGAAACTGGTAAACTTCTTTTTACATAAAAAAAAATTAAGTTATAATGTAATGAATGAAGAATAATCTTAGTATTTGTTCTTAAAAATTCCATTACAGGTCGGTGTTGTCTCAGATTACGACTTACTAGCTCTACACGTAATTTCAGGTTGGTGTTTAATTTCATACCAATTCTTTTTCTATATTGTTCTAAACGGTATGATATTGTCCACTTCGAACCTAAACTCTCGTGACTTTCCAAAAGGAGTGCGCGTTGAGGAGATGAATATATTCCCAGACGTGAACAGTAGTTGGAAAGTAAGCTCACAAAATCTTCCTTCATTCTCCTTTCACTCATGTAAATTGTCATAAGATCCTACTGATTAGTCCTATTCTTTGGGACTTTAATTTCTTTCTATTGATATTTTTACGTTCAACCATGATTGTAAAGGCTATATAATGTCATGCTTAGAATTAATAGAAAAGCACTTGAGATCTAATTGTAGACAATGTATTTCTTGAGTGACATATTGGTGAGAGTCTTTGTAGTGTGATAGTGAGGAACTTCTTCTCTCCGAACCACGTAAATATCTTGGTGTCTCTTTGTGTAATTCCGTTTATTGGTGTTGTGAGTACATTTGTTCGGCTTTCGACCCACAACAAAAAAAAAACCTTAATATATATATATGGGCAGAGGTTCAAGGAGATGCAGAAGTTGTTGAGCAAGACCAATGGGGAAGTTGTAGCAGATTTGATGACGCCCGCTCCATTGGTTGTTCGTGAAGCTACGAACTTGGAAAGTGCTGCCAGGTGTGTGTTCCTAACATAATACATTCTAGTGTACGCGTCTGTACTCATCATCATCGTAAAACTGTAGGGTGTTGCTCGAAACAAAGCTCCATCGTTTGCCCGTGGTAGACTGCGATGGGAAGCTGGTAAGGCCAATATGTTTGCCTCTTACACTTGCTGTTCTTCATCCTTGAACGCTTGCCAAATAATGTTGTTTGTGTTGGTTTTTGGAAGGTGGGGGTTATCACAAGAGAAGACATAGTTAGAGCTGGGCTGCACATCAAGCGCACTCACCAGAGTTAATATGGCTGCAGCTTTTGTTAGAGATTATGCATTATTTTGCTATGTTTTTTTTGTGCCTATACCAATTTTGACTCTCATTCATTTACCCCATTTTCACACAATTTCGTTGAATATGATTTTGAGATCGTTTCGTGGTCTAGAGTTGTTCTATCTAGAGATGTTCATGGAGCACGGAATTGAACAGAGACGAAAAATGTAATAACTTCTTTGGC

mRNA sequence

ATGACCTTGGAGGTTCTAGTGGAGAAGAGTCTATCTGGATTTCTTGTAATTGACGACGACTGGAAACTGGTCGGTGTTGTCTCAGATTACGACTTACTAGCTCTACACACCAATGGGGAAGTTGTAGCAGATTTGATGACGCCCGCTCCATTGGTTGTTCGTGAAGCTACGAACTTGGAAAGTGCTGCCAGGGTGTTGCTCGAAACAAAGCTCCATCGTTTGCCCGTGGTAGACTGCGATGGGAAGCTGGTGGGGGTTATCACAAGAGAAGACATAGTTAGAGCTGGGCTGCACATCAAGCGCACTCACCAGAGTTAATATGGCTGCAGCTTTTGTTAGAGATTATGCATTATTTTGCTATGTTTTTTTTGTGCCTATACCAATTTTGACTCTCATTCATTTACCCCATTTTCACACAATTTCGTTGAATATGATTTTGAGATCGTTTCGTGGTCTAGAGTTGTTCTATCTAGAGATGTTCATGGAGCACGGAATTGAACAGAGACGAAAAATGTAATAACTTCTTTGGC

Coding sequence (CDS)

ATGACCTTGGAGGTTCTAGTGGAGAAGAGTCTATCTGGATTTCTTGTAATTGACGACGACTGGAAACTGGTCGGTGTTGTCTCAGATTACGACTTACTAGCTCTACACACCAATGGGGAAGTTGTAGCAGATTTGATGACGCCCGCTCCATTGGTTGTTCGTGAAGCTACGAACTTGGAAAGTGCTGCCAGGGTGTTGCTCGAAACAAAGCTCCATCGTTTGCCCGTGGTAGACTGCGATGGGAAGCTGGTGGGGGTTATCACAAGAGAAGACATAGTTAGAGCTGGGCTGCACATCAAGCGCACTCACCAGAGTTAA

Protein sequence

MTLEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALHTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITREDIVRAGLHIKRTHQS

Homology

[Close]

BLAST of Cp4.1LG04g07970 vs. ExPASy Swiss-Prot
Match: O23193 (CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSX1 PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-29
Identity = 73/132 (55.30%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLAL--------------------------- 62
           LE+LVE  ++GF VID+DWKLVG+VSDYDLLAL                           
Sbjct: 100 LELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAV 159

Query: 63  -----HTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRE 103
                 TNG++V DLMTPAPLVV E TNLE AA++LLETK  RLPVVD DGKLVG+ITR 
Sbjct: 160 QKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRG 219

[Close]

BLAST of Cp4.1LG04g07970 vs. ExPASy Swiss-Prot
Match: Q9C5D0 (CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSX2 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-28
Identity = 71/131 (54.20%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLAL--------------------------- 62
           LE+LVEK ++G  VIDD+W LVGVVSDYDLLAL                           
Sbjct: 102 LELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNEL 161

Query: 63  -----HTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRE 102
                 T G+VV DLMTP+PLVVR++TNLE AAR+LLETK  RLPVVD DGKL+G++TR 
Sbjct: 162 QKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRG 221

[Close]

BLAST of Cp4.1LG04g07970 vs. ExPASy Swiss-Prot
Match: A9A5Y7 (Inosine-5'-monophosphate dehydrogenase OS=Nitrosopumilus maritimus (strain SCM1) OX=436308 GN=guaB PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-10
Identity = 34/90 (37.78%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALHTNGEVVADLMTPAPLVVREATNLESA 62
           L+   +K +SG LV+D + KLVG+V++ DLL   +NG  +AD+MT   +  +   +L+ A
Sbjct: 109 LDYAEDKEISGLLVVDSNSKLVGIVTERDLLFAGSNG-TIADVMTKDVVTAKPGVSLDEA 168

Query: 63  ARVLLETKLHRLPVVDCDGKLVGVITREDI 93
             +L + ++ +LP+VD  G + G+IT +DI
Sbjct: 169 KDILHKHRIEKLPIVDDSGIIQGLITSKDI 197

[Close]

BLAST of Cp4.1LG04g07970 vs. ExPASy Swiss-Prot
Match: P65168 (Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=guaB PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-10
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 11  LSGFLVIDDDWKLVGVVSDYDLLALHTNGEVVADLMTPAPLV-VREATNLESAARVLLET 70
           +SG  V+DDD  LVG++++ D+       + VA++MT APL+  +E  +  +A  +L   
Sbjct: 154 ISGLPVVDDDGALVGIITNRDMRFEVDQSKQVAEVMTKAPLITAQEGVSASAALGLLRRN 213

Query: 71  KLHRLPVVDCDGKLVGVITREDIVRAGLHIKRTHQS 106
           K+ +LPVVD  G+L G+IT +D V+   H   T  S
Sbjct: 214 KIEKLPVVDGRGRLTGLITVKDFVKTEQHPLATKDS 249

[Close]

BLAST of Cp4.1LG04g07970 vs. ExPASy Swiss-Prot
Match: P9WKI6 (Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=guaB PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-10
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 11  LSGFLVIDDDWKLVGVVSDYDLLALHTNGEVVADLMTPAPLV-VREATNLESAARVLLET 70
           +SG  V+DDD  LVG++++ D+       + VA++MT APL+  +E  +  +A  +L   
Sbjct: 154 ISGLPVVDDDGALVGIITNRDMRFEVDQSKQVAEVMTKAPLITAQEGVSASAALGLLRRN 213

Query: 71  KLHRLPVVDCDGKLVGVITREDIVRAGLHIKRTHQS 106
           K+ +LPVVD  G+L G+IT +D V+   H   T  S
Sbjct: 214 KIEKLPVVDGRGRLTGLITVKDFVKTEQHPLATKDS 249

[Close]

BLAST of Cp4.1LG04g07970 vs. NCBI nr
Match: XP_023531636.1 (CBS domain-containing protein CBSX2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185 bits (470), Expect = 2.77e-57
Identity = 103/134 (76.87%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALH-------------------------- 62
           LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALH                          
Sbjct: 68  LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALHVISVRVEEMNIFPDVNSSWKRFKEMQ 127

Query: 63  -----TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRED 105
                TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRED
Sbjct: 128 KLLSKTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRED 187

[Close]

BLAST of Cp4.1LG04g07970 vs. NCBI nr
Match: XP_023531635.1 (CBS domain-containing protein CBSX1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185 bits (469), Expect = 4.06e-57
Identity = 103/135 (76.30%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALH-------------------------- 62
           LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALH                          
Sbjct: 68  LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALHVISGVRVEEMNIFPDVNSSWKRFKEM 127

Query: 63  ------TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRE 105
                 TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRE
Sbjct: 128 QKLLSKTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRE 187

[Close]

BLAST of Cp4.1LG04g07970 vs. NCBI nr
Match: KAG6588674.1 (CBS domain-containing protein CBSX1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (461), Expect = 1.13e-55
Identity = 102/136 (75.00%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALH-------------------------- 62
           LEVLVEKSLSGF VIDDDWKLVGVVSDYDLLALH                          
Sbjct: 84  LEVLVEKSLSGFPVIDDDWKLVGVVSDYDLLALHAISGVGGGGETNIFPDVNSSWKRFKE 143

Query: 63  -------TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITR 105
                  TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITR
Sbjct: 144 IQKLLSKTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITR 203

[Close]

BLAST of Cp4.1LG04g07970 vs. NCBI nr
Match: KAG7022460.1 (CBS domain-containing protein CBSX1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182 bits (461), Expect = 1.13e-55
Identity = 102/136 (75.00%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALH-------------------------- 62
           LEVLVEKSLSGF VIDDDWKLVGVVSDYDLLALH                          
Sbjct: 84  LEVLVEKSLSGFPVIDDDWKLVGVVSDYDLLALHAISGVGGGGETNIFPDVNSSWKRFKE 143

Query: 63  -------TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITR 105
                  TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITR
Sbjct: 144 IQKLLSKTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITR 203

[Close]

BLAST of Cp4.1LG04g07970 vs. NCBI nr
Match: XP_022927858.1 (CBS domain-containing protein CBSX2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 177 bits (448), Expect = 1.09e-53
Identity = 101/137 (73.72%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALH-------------------------- 62
           LEVLVEKSLSGF VIDDDWKLVGVVSDYDLLALH                          
Sbjct: 84  LEVLVEKSLSGFPVIDDDWKLVGVVSDYDLLALHAISGVGGGGGETNIFPDVNSSWKRFK 143

Query: 63  --------TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVIT 105
                   TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVD DGKLVGVIT
Sbjct: 144 EIQKLLSKTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDRDGKLVGVIT 203

[Close]

BLAST of Cp4.1LG04g07970 vs. ExPASy TrEMBL
Match: A0A6J1EM78 (CBS domain-containing protein CBSX2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111434627 PE=4 SV=1)

HSP 1 Score: 177 bits (448), Expect = 5.29e-54
Identity = 101/137 (73.72%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALH-------------------------- 62
           LEVLVEKSLSGF VIDDDWKLVGVVSDYDLLALH                          
Sbjct: 84  LEVLVEKSLSGFPVIDDDWKLVGVVSDYDLLALHAISGVGGGGGETNIFPDVNSSWKRFK 143

Query: 63  --------TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVIT 105
                   TNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVD DGKLVGVIT
Sbjct: 144 EIQKLLSKTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDRDGKLVGVIT 203

[Close]

BLAST of Cp4.1LG04g07970 vs. ExPASy TrEMBL
Match: A0A6J1JN04 (CBS domain-containing protein CBSX1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486154 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 7.85e-54
Identity = 99/135 (73.33%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLAL--------------------------- 62
           LEVLVEKSLSGF VIDDDWKLVGVVSDYDLLAL                           
Sbjct: 76  LEVLVEKSLSGFPVIDDDWKLVGVVSDYDLLALCAISGVHVEEMNIFPDVNSSWKRFKEM 135

Query: 63  -----HTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRE 105
                 TNGEVVADLMTPAPLVVREA NLESAARVLLETKLHRLPVVDCDGKLVG+ITRE
Sbjct: 136 QKLLSKTNGEVVADLMTPAPLVVREAMNLESAARVLLETKLHRLPVVDCDGKLVGIITRE 195

[Close]

BLAST of Cp4.1LG04g07970 vs. ExPASy TrEMBL
Match: A0A5A7SKP3 (CBS domain-containing protein CBSX2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00630 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 4.26e-45
Identity = 82/125 (65.60%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALHT------------------------N 62
           LEVLVEKS+SGF V+DDDWKLVGVVSDYDLLAL +                        N
Sbjct: 88  LEVLVEKSVSGFPVVDDDWKLVGVVSDYDLLALDSISVGLIIMLLWQSFKLIQKLLSKKN 147

Query: 63  GEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITREDIVRAGLH 103
           GE+V DLMTPAPLVV E  N E+AAR+LLETK HRLPVVDC+GKLVG+ITREDIVR GL 
Sbjct: 148 GEIVGDLMTPAPLVVSETMNFENAARLLLETKFHRLPVVDCEGKLVGIITREDIVRVGLE 207

[Close]

BLAST of Cp4.1LG04g07970 vs. ExPASy TrEMBL
Match: A0A5D3C646 (CBS domain-containing protein CBSX2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00630 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 1.27e-43
Identity = 82/134 (61.19%), Postives = 91/134 (67.91%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALHT------------------------- 62
           LEVLVEKS+SGF V+DDDWKLVGVVSDYDLLAL +                         
Sbjct: 88  LEVLVEKSVSGFPVVDDDWKLVGVVSDYDLLALDSISGVGGGDIINIFPDVNCSWESFKL 147

Query: 63  --------NGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITR 103
                   NGE+V DLMTPAPLVV E  N E+AAR+LLETK HRLPVVDC+GKLVG+ITR
Sbjct: 148 IQKLLSKKNGEIVGDLMTPAPLVVSETMNFENAARLLLETKFHRLPVVDCEGKLVGIITR 207

[Close]

BLAST of Cp4.1LG04g07970 vs. ExPASy TrEMBL
Match: A0A1S3C189 (CBS domain-containing protein CBSX2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495670 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 1.59e-43
Identity = 82/134 (61.19%), Postives = 91/134 (67.91%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLALHT------------------------- 62
           LEVLVEKS+SGF V+DDDWKLVGVVSDYDLLAL +                         
Sbjct: 96  LEVLVEKSVSGFPVVDDDWKLVGVVSDYDLLALDSISGVGGGDIINIFPDVNCSWESFKL 155

Query: 63  --------NGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITR 103
                   NGE+V DLMTPAPLVV E  N E+AAR+LLETK HRLPVVDC+GKLVG+ITR
Sbjct: 156 IQKLLSKKNGEIVGDLMTPAPLVVSETMNFENAARLLLETKFHRLPVVDCEGKLVGIITR 215

[Close]

BLAST of Cp4.1LG04g07970 vs. TAIR 10
Match: AT4G36910.1 (Cystathionine beta-synthase (CBS) family protein )

HSP 1 Score: 130.6 bits (327), Expect = 7.5e-31
Identity = 73/132 (55.30%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLAL--------------------------- 62
           LE+LVE  ++GF VID+DWKLVG+VSDYDLLAL                           
Sbjct: 100 LELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAV 159

Query: 63  -----HTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRE 103
                 TNG++V DLMTPAPLVV E TNLE AA++LLETK  RLPVVD DGKLVG+ITR 
Sbjct: 160 QKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRG 219

[Close]

BLAST of Cp4.1LG04g07970 vs. TAIR 10
Match: AT4G34120.1 (Cystathionine beta-synthase (CBS) family protein )

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-29
Identity = 71/131 (54.20%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 3   LEVLVEKSLSGFLVIDDDWKLVGVVSDYDLLAL--------------------------- 62
           LE+LVEK ++G  VIDD+W LVGVVSDYDLLAL                           
Sbjct: 102 LELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNEL 161

Query: 63  -----HTNGEVVADLMTPAPLVVREATNLESAARVLLETKLHRLPVVDCDGKLVGVITRE 102
                 T G+VV DLMTP+PLVVR++TNLE AAR+LLETK  RLPVVD DGKL+G++TR 
Sbjct: 162 QKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRG 221

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g07970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23193	1.1e-29	55.30	CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
Q9C5D0	2.0e-28	54.20	CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
A9A5Y7	5.5e-10	37.78	Inosine-5'-monophosphate dehydrogenase OS=Nitrosopumilus maritimus (strain SCM1)...	[more]
P65168	7.1e-10	37.50	Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium bovis (strain ATCC BAA-9...	[more]
P9WKI6	7.1e-10	37.50	Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium tuberculosis (strain CDC...	[more]

BLAST of Cp4.1LG04g07970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531636.1	2.77e-57	76.87	CBS domain-containing protein CBSX2, chloroplastic isoform X2 [Cucurbita pepo su...	[more]
XP_023531635.1	4.06e-57	76.30	CBS domain-containing protein CBSX1, chloroplastic isoform X1 [Cucurbita pepo su...	[more]
KAG6588674.1	1.13e-55	75.00	CBS domain-containing protein CBSX1, chloroplastic, partial [Cucurbita argyrospe...	[more]
KAG7022460.1	1.13e-55	75.00	CBS domain-containing protein CBSX1, chloroplastic, partial [Cucurbita argyrospe...	[more]
XP_022927858.1	1.09e-53	73.72	CBS domain-containing protein CBSX2, chloroplastic [Cucurbita moschata]	[more]

BLAST of Cp4.1LG04g07970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EM78	5.29e-54	73.72	CBS domain-containing protein CBSX2, chloroplastic OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JN04	7.85e-54	73.33	CBS domain-containing protein CBSX1, chloroplastic OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7SKP3	4.26e-45	65.60	CBS domain-containing protein CBSX2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3C646	1.27e-43	61.19	CBS domain-containing protein CBSX2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3C189	1.59e-43	61.19	CBS domain-containing protein CBSX2, chloroplastic OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Cp4.1LG04g07970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36910.1	7.5e-31	55.30	Cystathionine beta-synthase (CBS) family protein	[more]
AT4G34120.1	1.4e-29	54.20	Cystathionine beta-synthase (CBS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000644	CBS domain	SMART	SM00116	cbs_1	coord: 49..97 e-value: 2.6E-10 score: 50.2
IPR000644	CBS domain	PFAM	PF00571	CBS	coord: 3..34 e-value: 1.2E-4 score: 22.4 coord: 42..95 e-value: 6.2E-15 score: 55.4
IPR000644	CBS domain	PROSITE	PS51371	CBS	coord: 46..105 score: 14.576786
None	No IPR available	GENE3D	3.10.580.10		coord: 37..103 e-value: 8.1E-24 score: 86.0 coord: 1..36 e-value: 3.8E-9 score: 38.3
None	No IPR available	PANTHER	PTHR48108:SF8	CBS DOMAIN-CONTAINING PROTEIN CBSX1, CHLOROPLASTIC	coord: 3..104
None	No IPR available	PANTHER	PTHR48108	CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC	coord: 3..104
None	No IPR available	SUPERFAMILY	54631	CBS-domain pair	coord: 3..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g07970.1	Cp4.1LG04g07970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0009507	chloroplast