Cp4.1LG04g07610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g07610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	GATA type zinc finger transcription factor family protein
Location	Cp4.1LG04: 4048868 .. 4050209 (+)
RNA-Seq Expression	Cp4.1LG04g07610
Synteny	Cp4.1LG04g07610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGTTAGCGTTGAATTAGTATTGTTATCTTCTAATTTAAGCCAAAAATTAGTTTAATATCCATTGGCTTATCGTTAATTAAGGTTTGAATCACTAATCTCCACCTTCCATCTCTTCATCTCTTTCATTATTTATACACACATCCCTTCAACACATTCTCACAACACAAAATAAAACAAGAGAGTGGCATTCACATTGGCATTTGCATAGCCACATAGCCACTCTCCCGGTCTCTGTCTCCGTGTCGGTTTTGTTCGTTCGGTCGATCGATTGTGTTTCAAGGGGACGGTGTAGGGAACCCGTGTGAGGTACACTAAAGGAAGCCATGGCTAGCTTTTCAGGAACCACACAGAAGTGCATGGCTTGTGACAAGACCGTTTATCTTGTCGATAAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAAGGGCACTCTCAAGGTAATTACACGTTCTCGTCAGAGTCATGAGGTTCAAATCTTCATATTTCATTTTAACGTCTTTCGAACATGTTGGTTTTGCAGCTTAGCAACTACTGTTCGTTCGAGGGAGTGTTGTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAAAGCTTCGAAGGCAATATTTCTTTATTTGTTTATAGTCGTTAAAATGTATTTTCTCGCTACTTTTTCTTCCAACATGATTCAAGACTCGAACATATGGCAAGGTTATCCATAACGTTGAGTTGCTCACGGCTCACTTGTTCAATTGGTTAGAATAAGTGCCGCACAATTGTTGTCCCACTATCGCAGAGTGTGATTGTGACCCACTTTCAATGAATATTCGAGTTCTAAAATTTAATTTCCTTTTTGTCAGGAACTCCGAAAATCGTGAAGGTAGAAAAACCCACCGACAACGAGGTATAATTTCTTCGTTTTGTAATCTACTTTTTCGACATGCTTTGTAACTATTACGGATGGATTGAGTTGGGTTGGATTGGATTATCGAACAGAAAGCGAGTGCGAAGTCAAACCTATTTGCTGGAACCCGAGACAAATGTGCAGGGTGTACGAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAACGGGACGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

mRNA sequence

ATGGGAACCACACAGAAGTGCATGGCTTGTGACAAGACCGTTTATCTTGTCGATAAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAAGGGCACTCTCAAGGTAATTACACGTTCTCGTCAGAGTCATGAGGTTCAAATCTTCATATTTCATTTTAACAAAGCGAGTGCGAAGTCAAACCTATTTGCTGGAACCCGAGACAAATGTGCAGGGTGTACGAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAACGGGACGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

Coding sequence (CDS)

ATGGGAACCACACAGAAGTGCATGGCTTGTGACAAGACCGTTTATCTTGTCGATAAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAAGGGCACTCTCAAGGTAATTACACGTTCTCGTCAGAGTCATGAGGTTCAAATCTTCATATTTCATTTTAACAAAGCGAGTGCGAAGTCAAACCTATTTGCTGGAACCCGAGACAAATGTGCAGGGTGTACGAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAACGGGACGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

Protein sequence

MGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSRQSHEVQIFIFHFNKASAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES

Homology

[Close]

BLAST of Cp4.1LG04g07610 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.5e-57
Identity = 109/174 (62.64%), Postives = 123/174 (70.69%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSRQSHEVQIFIF-HF 61
           GTTQKCMACDKTVYLVDKLTADNRV+HKACFRC+HCKGTLK+   +  S E  ++   HF
Sbjct: 5   GTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKL--SNYNSFEGVLYCRPHF 64

Query: 62  NK-------------------------------ASAKSNLFAGTRDKCAGCTKTVYPLEK 121
           ++                                +  SN+F GTR+KC GC KTVYP+EK
Sbjct: 65  DQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEK 124

Query: 122 VTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 144
           V+VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 125 VSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]

BLAST of Cp4.1LG04g07610 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.7e-51
Identity = 97/174 (55.75%), Postives = 114/174 (65.52%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSRQSHEVQIFIFHFN 61
           GTTQKC  C+KTVYLVDKL A+ RV+HKACFRC+HC  TLK ++       V     HF+
Sbjct: 6   GTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLK-LSNFNSFDGVVYCRHHFD 65

Query: 62  K------------------------------ASAKSNLFAGTRDKCAGCTKTVYPLEKVT 121
           +                              A+  S+ F GTRDKC  C K VYP+E+V 
Sbjct: 66  QLFKRTGSLEKSFDGTPKFKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVK 125

Query: 122 VNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE 146
           V+GTAYH++CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLFK+KGNYSQLE E
Sbjct: 126 VDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVE 178

[Close]

BLAST of Cp4.1LG04g07610 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.8e-42
Identity = 93/192 (48.44%), Postives = 112/192 (58.33%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L++   S        + H  Q
Sbjct: 5   GTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQ 64

Query: 62  IF--IFHFNK--------------------ASAKSNLFAGTRDKCAGCTKTVYPLEKVTV 121
           +F     F+K                     S  + +F+GT+DKCA CTKTVYP+EKVTV
Sbjct: 65  LFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEKVTV 124

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 165
               YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        A 
Sbjct: 125 ESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRAT 184

[Close]

BLAST of Cp4.1LG04g07610 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-40
Identity = 94/195 (48.21%), Postives = 116/195 (59.49%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L++ + S        + H  Q
Sbjct: 5   GTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQ 64

Query: 62  IF--IFHFNK---ASAKS----------------NLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F     FNK   + AKS                  F+GT++KCA C+KTVYP+EKVTV 
Sbjct: 65  LFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVE 124

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL--ETERQKSNA 167
              YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      ++S A
Sbjct: 125 SQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

[Close]

BLAST of Cp4.1LG04g07610 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.8e-38
Identity = 81/176 (46.02%), Postives = 107/176 (60.80%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT  KC ACDKTV+ +D LTAD   +HK CF+C HCKG L + + S        ++H  Q
Sbjct: 5   GTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTHFEQ 64

Query: 62  IF--IFHFNK-------------ASAKSNL---FAGTRDKCAGCTKTVYPLEKVTVNGTA 121
           +F     F+K             A A S +   F+GT+DKCA C KTVYPLEK+T+ G +
Sbjct: 65  LFKETGSFSKKFAPGCRSTDKELARAPSKICSAFSGTQDKCAACQKTVYPLEKLTLEGES 124

Query: 122 YHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 153
           YHKSCFKCSHGGC ++ S+Y A  G LYCK H  QLF EKG+Y+ ++ + +    +
Sbjct: 125 YHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSESQEVL 180

[Close]

BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match: XP_023529874.1 (LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291 bits (746), Expect = 2.93e-98
Identity = 149/193 (77.20%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLK+            + H  Q
Sbjct: 6   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQ 65

Query: 62  IFI---------------------FHFNKASAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F                          KASAKSNLFAGTRDKCAGCTKTVYPLEKVTVN
Sbjct: 66  LFKRTGSLDKSFEGTPKIVKVEKPTDNEKASAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 125

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA 166
           GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA
Sbjct: 126 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA 185

[Close]

BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match: KAG7022503.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291 bits (745), Expect = 5.48e-98
Identity = 149/201 (74.13%), Postives = 154/201 (76.62%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR------------- 61
           GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLK+                  
Sbjct: 6   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQ 65

Query: 62  ---------QSHEVQIFIFHFN--------------KASAKSNLFAGTRDKCAGCTKTVY 121
                    +S E  I +F +               KA+AKSNLFAGTRDKCAGCTKTVY
Sbjct: 66  LFKRTGSLDKSFEGNISLFAYRTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVY 125

Query: 122 PLEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE 166
           PLEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE
Sbjct: 126 PLEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE 185

[Close]

BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match: XP_022927664.1 (LIM domain-containing protein WLIM1-like [Cucurbita moschata])

HSP 1 Score: 290 bits (743), Expect = 8.39e-98
Identity = 148/193 (76.68%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLK+            + H  Q
Sbjct: 6   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQ 65

Query: 62  IFI---------------------FHFNKASAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F                          KA+AKSNLFAGTRDKCAGCTKTVYPLEKVTVN
Sbjct: 66  LFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 125

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA 166
           GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA
Sbjct: 126 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA 185

[Close]

BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match: XP_022988956.1 (LIM domain-containing protein WLIM1-like [Cucurbita maxima])

HSP 1 Score: 289 bits (740), Expect = 2.40e-97
Identity = 148/193 (76.68%), Postives = 153/193 (79.27%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLK+            + H  Q
Sbjct: 6   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQ 65

Query: 62  IF---------------IFHFNK------ASAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F               I    K      A+AKSNLFAGTRDKCAGCTKTVYPLEKVTVN
Sbjct: 66  LFKRTGSLDKSFEGTPKIVKIEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 125

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA 166
           GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSN+VA
Sbjct: 126 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNSVA 185

[Close]

BLAST of Cp4.1LG04g07610 vs. NCBI nr
Match: XP_038888760.1 (LIM domain-containing protein WLIM1-like [Benincasa hispida])

HSP 1 Score: 267 bits (682), Expect = 1.76e-88
Identity = 136/195 (69.74%), Postives = 149/195 (76.41%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLK+            + H  Q
Sbjct: 6   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQ 65

Query: 62  IF---------------IFHFNK------ASAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F               +   +K      A + SN+FAGTRDKC+GCTKTVYP+EKVTVN
Sbjct: 66  LFKRTGSLDKSFEGTPKVVKLDKPTENENAKSVSNMFAGTRDKCSGCTKTVYPIEKVTVN 125

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSN--A 166
           GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK+N  +
Sbjct: 126 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNNAS 185

[Close]

BLAST of Cp4.1LG04g07610 vs. ExPASy TrEMBL
Match: A0A6J1EIM6 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111434484 PE=4 SV=1)

HSP 1 Score: 290 bits (743), Expect = 4.06e-98
Identity = 148/193 (76.68%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLK+            + H  Q
Sbjct: 6   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQ 65

Query: 62  IFI---------------------FHFNKASAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F                          KA+AKSNLFAGTRDKCAGCTKTVYPLEKVTVN
Sbjct: 66  LFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 125

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA 166
           GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA
Sbjct: 126 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA 185

[Close]

BLAST of Cp4.1LG04g07610 vs. ExPASy TrEMBL
Match: A0A6J1JIN6 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111486161 PE=4 SV=1)

HSP 1 Score: 289 bits (740), Expect = 1.16e-97
Identity = 148/193 (76.68%), Postives = 153/193 (79.27%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLK+            + H  Q
Sbjct: 6   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQ 65

Query: 62  IF---------------IFHFNK------ASAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F               I    K      A+AKSNLFAGTRDKCAGCTKTVYPLEKVTVN
Sbjct: 66  LFKRTGSLDKSFEGTPKIVKIEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 125

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVA 166
           GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSN+VA
Sbjct: 126 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNSVA 185

[Close]

BLAST of Cp4.1LG04g07610 vs. ExPASy TrEMBL
Match: A0A5A7SP97 (LIM domain protein GLIM1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001270 PE=4 SV=1)

HSP 1 Score: 259 bits (662), Expect = 9.75e-86
Identity = 131/196 (66.84%), Postives = 143/196 (72.96%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMAC+KTVYLVDKLTADNRVFHK CFRCYHC+GTLK+            + H  Q
Sbjct: 6   GTTQKCMACEKTVYLVDKLTADNRVFHKVCFRCYHCRGTLKLSNYCSFEGVLYCRPHYDQ 65

Query: 62  IFI---------------------FHFNKASAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F                           A + SN+F GTRDKC+GCTKTVYP+EKVTVN
Sbjct: 66  LFKRTGSLDKSFEGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIEKVTVN 125

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSN--- 166
           GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK+N   
Sbjct: 126 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNSAV 185

[Close]

BLAST of Cp4.1LG04g07610 vs. ExPASy TrEMBL
Match: A0A6J1D4V0 (LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC111017319 PE=4 SV=1)

HSP 1 Score: 257 bits (657), Expect = 4.75e-85
Identity = 129/192 (67.19%), Postives = 143/192 (74.48%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMAC+KTVYLVDKLTADNRVFHKACFRCYHCKGTLK+            + H  Q
Sbjct: 6   GTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQ 65

Query: 62  IFI--------------------FHFNKASAKSNLFAGTRDKCAGCTKTVYPLEKVTVNG 121
           +F                          A + SN+F GTRDKC+GCTKTVYP+EKVTVNG
Sbjct: 66  LFKRTGSLDKSFEGTPKVKPEKPTETENAKSVSNMFGGTRDKCSGCTKTVYPIEKVTVNG 125

Query: 122 TAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAM 166
           TAYHK+CFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLF EKGNYSQLETERQK N+V+M
Sbjct: 126 TAYHKTCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK-NSVSM 185

[Close]

BLAST of Cp4.1LG04g07610 vs. ExPASy TrEMBL
Match: A0A0A0K2E5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071340 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 2.66e-83
Identity = 130/196 (66.33%), Postives = 143/196 (72.96%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GTTQKCMAC+KTVYLVDKLTADNRVFHKACFRCYHCKGTLK+            + H  Q
Sbjct: 6   GTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQ 65

Query: 62  IF---------------IFHFNK------ASAKSNLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F               +    K      A + SN+F GTRDKC+GCTKTVY +EKVTVN
Sbjct: 66  LFKRTGSLDKSFEGTPKVMRSEKPSENENAKSVSNMFGGTRDKCSGCTKTVYLIEKVTVN 125

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSN--- 166
           G AYHKSCFKCSHGGCTISPS+YIAHEGKLYCKHHHIQLF EKGNYSQLETERQK+N   
Sbjct: 126 GNAYHKSCFKCSHGGCTISPSSYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQKNNSAI 185

[Close]

BLAST of Cp4.1LG04g07610 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 221.9 bits (564), Expect = 3.9e-58
Identity = 109/174 (62.64%), Postives = 123/174 (70.69%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSRQSHEVQIFIF-HF 61
           GTTQKCMACDKTVYLVDKLTADNRV+HKACFRC+HCKGTLK+   +  S E  ++   HF
Sbjct: 5   GTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKL--SNYNSFEGVLYCRPHF 64

Query: 62  NK-------------------------------ASAKSNLFAGTRDKCAGCTKTVYPLEK 121
           ++                                +  SN+F GTR+KC GC KTVYP+EK
Sbjct: 65  DQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEK 124

Query: 122 VTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 144
           V+VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 125 VSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]

BLAST of Cp4.1LG04g07610 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-43
Identity = 93/192 (48.44%), Postives = 112/192 (58.33%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L++   S        + H  Q
Sbjct: 5   GTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQ 64

Query: 62  IF--IFHFNK--------------------ASAKSNLFAGTRDKCAGCTKTVYPLEKVTV 121
           +F     F+K                     S  + +F+GT+DKCA CTKTVYP+EKVTV
Sbjct: 65  LFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEKVTV 124

Query: 122 NGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAV 165
               YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L        A 
Sbjct: 125 ESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRAT 184

[Close]

BLAST of Cp4.1LG04g07610 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 167.5 bits (423), Expect = 8.8e-42
Identity = 94/195 (48.21%), Postives = 116/195 (59.49%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L++ + S        + H  Q
Sbjct: 5   GTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQ 64

Query: 62  IF--IFHFNK---ASAKS----------------NLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F     FNK   + AKS                  F+GT++KCA C+KTVYP+EKVTV 
Sbjct: 65  LFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVE 124

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL--ETERQKSNA 167
              YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      ++S A
Sbjct: 125 SQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

[Close]

BLAST of Cp4.1LG04g07610 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 167.5 bits (423), Expect = 8.8e-42
Identity = 94/195 (48.21%), Postives = 116/195 (59.49%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L++ + S        + H  Q
Sbjct: 5   GTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQ 64

Query: 62  IF--IFHFNK---ASAKS----------------NLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F     FNK   + AKS                  F+GT++KCA C+KTVYP+EKVTV 
Sbjct: 65  LFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVE 124

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL--ETERQKSNA 167
              YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      ++S A
Sbjct: 125 SQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

[Close]

BLAST of Cp4.1LG04g07610 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 167.5 bits (423), Expect = 8.8e-42
Identity = 94/195 (48.21%), Postives = 116/195 (59.49%), Query Frame = 0


Query: 2   GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKVITRSR-------QSHEVQ 61
           GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L++ + S        + H  Q
Sbjct: 5   GTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQ 64

Query: 62  IF--IFHFNK---ASAKS----------------NLFAGTRDKCAGCTKTVYPLEKVTVN 121
           +F     FNK   + AKS                  F+GT++KCA C+KTVYP+EKVTV 
Sbjct: 65  LFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVE 124

Query: 122 GTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL--ETERQKSNA 167
              YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      ++S A
Sbjct: 125 SQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g07610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	5.5e-57	62.64	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	7.7e-51	55.75	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	3.8e-42	48.44	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	1.2e-40	48.21	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
Q7F9R9	9.8e-38	46.02	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Cp4.1LG04g07610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529874.1	2.93e-98	77.20	LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7022503.1	5.48e-98	74.13	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022927664.1	8.39e-98	76.68	LIM domain-containing protein WLIM1-like [Cucurbita moschata]	[more]
XP_022988956.1	2.40e-97	76.68	LIM domain-containing protein WLIM1-like [Cucurbita maxima]	[more]
XP_038888760.1	1.76e-88	69.74	LIM domain-containing protein WLIM1-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG04g07610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIM6	4.06e-98	76.68	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JIN6	1.16e-97	76.68	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5A7SP97	9.75e-86	66.84	LIM domain protein GLIM1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1D4V0	4.75e-85	67.19	LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0K2E5	2.66e-83	66.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071340 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g07610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	3.9e-58	62.64	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	2.7e-43	48.44	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	8.8e-42	48.21	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	8.8e-42	48.21	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	8.8e-42	48.21	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 76..128 e-value: 3.2E-15 score: 66.6 coord: 6..62 e-value: 0.0047 score: 20.4
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 77..132 e-value: 8.0E-13 score: 48.4 coord: 7..43 e-value: 7.5E-7 score: 29.3
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 7..41
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 75..135 score: 12.9394
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 5..66 score: 9.4447
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 1..66 e-value: 5.2E-12 score: 47.3
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 71..141 e-value: 1.2E-20 score: 75.5
None	No IPR available	PANTHER	PTHR24206:SF35	LIM DOMAIN-CONTAINING PROTEIN WLIM1	coord: 61..154 coord: 2..44
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 2..44
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 61..154
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 77..137 e-value: 9.10782E-39 score: 124.505
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 69..102
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 2..32
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 103..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g07610.1	Cp4.1LG04g07610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding