Cp4.1LG04g07580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g07580
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionAnkyrin repeat and KH domain-containing protein
LocationCp4.1LG04: 4067907 .. 4068269 (+)
RNA-Seq ExpressionCp4.1LG04g07580
SyntenyCp4.1LG04g07580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTGTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGTCCTCCAATTTTCCGGGAAAATGAACCTGTTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACCACGGCCACACTTTTCCCAAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGGAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGATCCCAACTTCAACTTCCATAATTCGGTAGAGAATTTTTAA

mRNA sequence

ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTGTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGTCCTCCAATTTTCCGGGAAAATGAACCTGTTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACCACGGCCACACTTTTCCCAAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGGAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGATCCCAACTTCAACTTCCATAATTCGGTAGAGAATTTTTAA

Coding sequence (CDS)

ATGGATCATCGCCATAATTTGTTTGTTTCTTCAAATGGGTCTGTGGAATCTGGCTGGACTGTGTACTTGGAGGATTCCTCGTCCATGTTTACTCCAAGAATTCAAAATGAAGAACTGGATTTGTCTATGCTTTCTGATGCTTCTTCTGGTCCTCCAATTTTCCGGGAAAATGAACCTGTTTTCCCGGAAAATGAATCTGGTCGGTGCTTTTGTGATACCACGGCCACACTTTTCCCAAAAGGTAGCCGGAAAATGAAGGGCGGTGACGGCCGACGGCGGCCGGAGCAAACGGCGTCGTTTCTTGATGACACTGCTAGCTCTGATCCCAACTTCAACTTCCATAATTCGGTAGAGAATTTTTAA

Protein sequence

MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPVFPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNSVENF
Homology
BLAST of Cp4.1LG04g07580 vs. ExPASy Swiss-Prot
Match: Q8L9K4 (Protein SOB FIVE-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=SOFL5 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-04
Identity = 44/136 (32.35%), Postives = 58/136 (42.65%), Query Frame = 0

Query: 9   VSSNGSVESGWTVYLEDSSSMFTPRI--------------------------QNEELDLS 68
           + S+   ESGWT+YL+ S S  +P                            + EE DLS
Sbjct: 2   LGSSSGCESGWTLYLDQSVSSPSPSCFRDSNGFDSRRRSKDSWDQNYVHQEEEEEEDDLS 61

Query: 69  MLSDASSGPPIFRENEPVFPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLD 119
           M+SDASSGP    E + V   N  G               ++ K    RR  E+  S LD
Sbjct: 62  MISDASSGPRNISEEDSVKKINIVGL-------------KKQCKREKKRRDYEKMNSLLD 121

BLAST of Cp4.1LG04g07580 vs. ExPASy Swiss-Prot
Match: B6IDH8 (Protein SOB FIVE-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=SOFL6 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.9e-04
Identity = 37/104 (35.58%), Postives = 54/104 (51.92%), Query Frame = 0

Query: 16  ESGWTVYLEDSSSMFTPRI--------QNEELDLSMLSDASSGPPIFRENEPVFPEN--E 75
           +SGWT+YL  SSS+             Q  + D SM+SDASSGPP + E E V  ++  +
Sbjct: 13  DSGWTMYLGHSSSVSLHHFDYHNGETKQEHDEDSSMVSDASSGPPYYCE-ETVHEDHLQQ 72

Query: 76  SGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDP 110
           + + +C + +    K   K K  + +   E+  S  DDTASS P
Sbjct: 73  NTQYWCKSKSK--NKNKNKKKVHEEQGYSERFNSSFDDTASSLP 113

BLAST of Cp4.1LG04g07580 vs. NCBI nr
Match: XP_023531126.1 (uncharacterized protein LOC111793463 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243 bits (621), Expect = 8.31e-81
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60
           MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV
Sbjct: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116
           FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS
Sbjct: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116

BLAST of Cp4.1LG04g07580 vs. NCBI nr
Match: XP_023531125.1 (uncharacterized protein LOC111793463 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243 bits (621), Expect = 1.02e-80
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60
           MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV
Sbjct: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116
           FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS
Sbjct: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116

BLAST of Cp4.1LG04g07580 vs. NCBI nr
Match: KAG6588718.1 (hypothetical protein SDJN03_17283, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241 bits (616), Expect = 4.65e-80
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60
           MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV
Sbjct: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116
           FPENESGRCFCDTT TLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS
Sbjct: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116

BLAST of Cp4.1LG04g07580 vs. NCBI nr
Match: XP_022927878.1 (uncharacterized protein LOC111434644 isoform X2 [Cucurbita moschata])

HSP 1 Score: 240 bits (613), Expect = 1.33e-79
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60
           MDHRHNLFVSSNGSVESGWT+YLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV
Sbjct: 1   MDHRHNLFVSSNGSVESGWTLYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116
           FPENESGRCFCDTT TLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS
Sbjct: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116

BLAST of Cp4.1LG04g07580 vs. NCBI nr
Match: XP_022927877.1 (uncharacterized protein LOC111434644 isoform X1 [Cucurbita moschata])

HSP 1 Score: 240 bits (613), Expect = 1.63e-79
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60
           MDHRHNLFVSSNGSVESGWT+YLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV
Sbjct: 1   MDHRHNLFVSSNGSVESGWTLYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116
           FPENESGRCFCDTT TLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS
Sbjct: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116

BLAST of Cp4.1LG04g07580 vs. ExPASy TrEMBL
Match: A0A6J1EMA0 (uncharacterized protein LOC111434644 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434644 PE=3 SV=1)

HSP 1 Score: 240 bits (613), Expect = 6.46e-80
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60
           MDHRHNLFVSSNGSVESGWT+YLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV
Sbjct: 1   MDHRHNLFVSSNGSVESGWTLYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116
           FPENESGRCFCDTT TLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS
Sbjct: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116

BLAST of Cp4.1LG04g07580 vs. ExPASy TrEMBL
Match: A0A6J1EIF1 (uncharacterized protein LOC111434644 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434644 PE=3 SV=1)

HSP 1 Score: 240 bits (613), Expect = 7.90e-80
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60
           MDHRHNLFVSSNGSVESGWT+YLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV
Sbjct: 1   MDHRHNLFVSSNGSVESGWTLYLEDSSSMFTPRIQNEELDLSMLSDASSGPPIFRENEPV 60

Query: 61  FPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116
           FPENESGRCFCDTT TLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS
Sbjct: 61  FPENESGRCFCDTTPTLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116

BLAST of Cp4.1LG04g07580 vs. ExPASy TrEMBL
Match: A0A6J1JN42 (uncharacterized protein LOC111486186 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486186 PE=3 SV=1)

HSP 1 Score: 233 bits (593), Expect = 7.49e-77
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSS-MFTPRIQNEELDLSMLSDASSGPPIFRENEP 60
           MDHRHNLFVSSNGSVESGWTVYLEDSSS +FTPRIQNEELDLSMLSDASSGPPIFRENEP
Sbjct: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSSLFTPRIQNEELDLSMLSDASSGPPIFRENEP 60

Query: 61  VFPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116
           VFPENESGRCFCDTT TLF KGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS
Sbjct: 61  VFPENESGRCFCDTTPTLFSKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 117

BLAST of Cp4.1LG04g07580 vs. ExPASy TrEMBL
Match: A0A6J1JNX8 (uncharacterized protein LOC111486186 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486186 PE=3 SV=1)

HSP 1 Score: 233 bits (593), Expect = 9.15e-77
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSS-MFTPRIQNEELDLSMLSDASSGPPIFRENEP 60
           MDHRHNLFVSSNGSVESGWTVYLEDSSS +FTPRIQNEELDLSMLSDASSGPPIFRENEP
Sbjct: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSSLFTPRIQNEELDLSMLSDASSGPPIFRENEP 60

Query: 61  VFPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 116
           VFPENESGRCFCDTT TLF KGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS
Sbjct: 61  VFPENESGRCFCDTTPTLFSKGSRKMKGGDGRRRPEQTASFLDDTASSDPNFNFHNS 117

BLAST of Cp4.1LG04g07580 vs. ExPASy TrEMBL
Match: A0A5D3C4P0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001310 PE=3 SV=1)

HSP 1 Score: 143 bits (360), Expect = 3.59e-41
Identity = 80/138 (57.97%), Postives = 95/138 (68.84%), Query Frame = 0

Query: 1   MDHRHNLFVSSNGSVESGWTVYLEDSSSMFTPRI-------------QNEELDLSMLSDA 60
           MDH  NLFVSS+GSVESGWTVYLE+SSS F+ RI             +++E+DLSM+SDA
Sbjct: 1   MDHGRNLFVSSDGSVESGWTVYLENSSSYFSRRIDDHKDFYDDDDDDEDQEVDLSMVSDA 60

Query: 61  SSGPPIFREN---EPVFPENESGR--CFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLD 120
           SSGP IF EN   E VFP+N      C+C  TA    K  RKMKGG+  RR +QT SFLD
Sbjct: 61  SSGPQIFPENNNNELVFPQNYDNPPPCYCAKTAGSLLKTGRKMKGGESDRRQQQTTSFLD 120

BLAST of Cp4.1LG04g07580 vs. TAIR 10
Match: AT4G33800.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 7.3e-06
Identity = 44/136 (32.35%), Postives = 58/136 (42.65%), Query Frame = 0

Query: 9   VSSNGSVESGWTVYLEDSSSMFTPRI--------------------------QNEELDLS 68
           + S+   ESGWT+YL+ S S  +P                            + EE DLS
Sbjct: 2   LGSSSGCESGWTLYLDQSVSSPSPSCFRDSNGFDSRRRSKDSWDQNYVHQEEEEEEDDLS 61

Query: 69  MLSDASSGPPIFRENEPVFPENESGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLD 119
           M+SDASSGP    E + V   N  G               ++ K    RR  E+  S LD
Sbjct: 62  MISDASSGPRNISEEDSVKKINIVGL-------------KKQCKREKKRRDYEKMNSLLD 121

BLAST of Cp4.1LG04g07580 vs. TAIR 10
Match: AT1G58460.1 (unknown protein; Has 35 Blast hits to 35 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-05
Identity = 37/104 (35.58%), Postives = 54/104 (51.92%), Query Frame = 0

Query: 16  ESGWTVYLEDSSSMFTPRI--------QNEELDLSMLSDASSGPPIFRENEPVFPEN--E 75
           +SGWT+YL  SSS+             Q  + D SM+SDASSGPP + E E V  ++  +
Sbjct: 13  DSGWTMYLGHSSSVSLHHFDYHNGETKQEHDEDSSMVSDASSGPPYYCE-ETVHEDHLQQ 72

Query: 76  SGRCFCDTTATLFPKGSRKMKGGDGRRRPEQTASFLDDTASSDP 110
           + + +C + +    K   K K  + +   E+  S  DDTASS P
Sbjct: 73  NTQYWCKSKSK--NKNKNKKKVHEEQGYSERFNSSFDDTASSLP 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8L9K41.0e-0432.35Protein SOB FIVE-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=SOFL5 PE=2 SV=1[more]
B6IDH83.9e-0435.58Protein SOB FIVE-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=SOFL6 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
XP_023531126.18.31e-81100.00uncharacterized protein LOC111793463 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023531125.11.02e-80100.00uncharacterized protein LOC111793463 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6588718.14.65e-8099.14hypothetical protein SDJN03_17283, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022927878.11.33e-7998.28uncharacterized protein LOC111434644 isoform X2 [Cucurbita moschata][more]
XP_022927877.11.63e-7998.28uncharacterized protein LOC111434644 isoform X1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A6J1EMA06.46e-8098.28uncharacterized protein LOC111434644 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1EIF17.90e-8098.28uncharacterized protein LOC111434644 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JN427.49e-7796.58uncharacterized protein LOC111486186 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JNX89.15e-7796.58uncharacterized protein LOC111486186 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A5D3C4P03.59e-4157.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT4G33800.17.3e-0632.35unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
AT1G58460.12.8e-0535.58unknown protein; Has 35 Blast hits to 35 proteins in 8 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..98
NoneNo IPR availablePANTHERPTHR33347:SF40SUBFAMILY NOT NAMEDcoord: 8..116
IPR044670SOB-five-Like (SOFL) familyPANTHERPTHR33347OSJNBA0091C07.3 PROTEINcoord: 8..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07580.1Cp4.1LG04g07580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009736 cytokinin-activated signaling pathway
biological_process GO:0009691 cytokinin biosynthetic process
biological_process GO:0009690 cytokinin metabolic process