Cp4.1LG04g07520 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g07520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
Location	Cp4.1LG04: 4082695 .. 4088446 (+)
RNA-Seq Expression	Cp4.1LG04g07520
Synteny	Cp4.1LG04g07520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCGCCTGAGTGTAGATGCCCATAACCAGCGTATCAACCCTAGGTAAATAGAAATTTTGGGCGGTTGCAATGAATATAACCATCGTTTTTTGTTCAGCAAAAAACGAAAGCATCTGCAAACGGCTGCTGTTCTTCCACAGCTGATCATGTCCTTACATGCCGCTCTTTCACCGCCGTCCCTCTATTCCATTCGTCATTCTCAGCCGCCATTACCAACCTCTCGGACCTCGATTCTCCCATTCCTTGCAAATTTCTCACACCCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGTCCACCGGATTTCTCTTCCCCTCTATTCGCCTTTGTTCCTGTGTTTTTGTTCTCAATCTGCTCGATCTATTCCAGGGAGTTGATCATTTGGTGGACGATCGGCGCAATTGGAACCGCTCGATTAGCTCCGACTTCGACATAATCGGTGGCGAAGATGACGAGGACGACGAGGATGAGGAAAATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTCCGGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAAGCGAGCCAGGAAGGCTGTGAGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTAGATGTTTTTCTTTTCTTGTTCATAAATAAGATTACCCATTAAATTTTTATCTACGAATTGTGGTTAGTCAATTGTGCATTAGAAATTGATTTTCTCAGGTGGGATTTTCTGTCAATGGGGTACTAATGCTAGCGTTTTTGTGGATTTTGAAGGCATTTCTTGAGGTAACTGCATCGATATTTAGCCCTTTTATTGCGTTTAGGATTTCCATATGGATTTGTGTCCTCAGTAATAGATAGTTAGCTGTAAACTTTCATTGCAAAAGAGAAATGCGTGTTCGAAATTCGACTATAAAAATGCAGATATTTTAGTTTGGTTATGGAGAAGGGGGTGAAAGAATTGTTATGACACTTAGTTCTTGTTCAATTGGATATGCATGGCAAACGTAGCACCCAAAGAAGAGATTTCTTGTCCTTCGTTGAGAGATGGTATTTCTGTTAGGGAACTCTGGCCAGAAAGTAAATAGAAAACTTTTTGTGAAGAAGAAGAATTGTCGGTTGGTTTTATACATGGAATTGCTGGTCTTCGGTTCGTTGTCCCCCAAAAAATGAGCTGTAATTGTGGTATTAGGTCTATTTTCGTTAAATTGAGATAAGAAAATGAACATTGATCTAGAATTTTTTTATGCTGATATTATATTNAACTTTATAAATCTTCTCATATGAACAGTCGTAGTAAACCAATATTGTCGTTGGAAAACTTTTCGAAACCTGTGAGTATCTCTTAAATTGACGGTATTCATACTGATTAAGGGTGTCATCTGCTCGGCTCTAGTTAGACGCTGGATATGGTTAAAAATGAACCTAAACGTCATTTGGCCTTGTTTGCTGCATTCATCAGAAGTAGTGAAAAGTACTAGTCCAATAATATGATCCATCCGAATCACTGGGCGATAGTAACATTAGATATATGTATGCACTCTTCTGGAGGGTTTATTTACCTGCACACTAACAGTTTTTTTATCGGGATAGGAAAAAGAATAAACCTAGATGGTATTTTATTGTGAGATCCCTCATCGGATGAGGAGGAGAATGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAAAACCTTGAGGGGAAGTGATATGGAAGCTCGAAAGGGAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGACTTGGGCCGTTACAAAAGTTATCAGAGCCAGACATCGGGAGATGTGCCAGTGAGGAGGCTGAGCCCCAAAGGGTGGTGTACACGAGGCGGTGTACCAGGAAGGACGCTGGGCTTCGAAGGGGGGTGGATTAGGGGATCCCACATGAATTGGAGAAGGGAACGAGTACCAGCAAGAACGCTGGGCCCCGAAGGGAGTGAATTGTGAAATCTTACATCGGTTGGGGAGGAGAATGAAACATTCTTTATAAGGGCGTGGAAACCTCTTCTTAGCAGACGTGTTTTAAAAACCTTAAGGGGAAGCCTGAAAGGGAAAACCCAAAGAAGACGGGACAATATCTGCTAGCGGTGGGCTTGAGCCGTTACAGTATTTGACTTTGTTTGTTGTCTACTCAGAAGTAGATCAAAGTGCTGGTCTGTTGATGTAGATTGATTATTGAGTTTGATGGTGGTCCGTGGTTGTAGACAGCATGAATGAAATTTCTGTTATAGCGAGATATAGATAGTCGGAGTATTCGGCATCATCTGTCTCTCTAGTGGGAATACACTACAGACTTTGCTAGAGGTTGTAATTACCTACTCACGTAGTACTTTTTATTTTTATGAGAACTGCAAACCTTTCATGGATGAAAAATGAAGGATTACGAAGGGCATACAACAAGAAAGGCCCCACAAAAAATAGCTAGACTAAAACAAATGGAGACTTCAATCAAACAAAGAAGACCAACAGGGTAATTATGAAGGCCTTAAAGCCCAAAGGGAGATGTGGAATCTAACAAGGGACCACACCTCCTATTTAGGTCGATCAATCCCTAAAAGTTCTGTTATTTCGTCCTGCCCAAAAGCCCCACAAAATCACGCAAACCTTGGCTAGCCACAGAAAACGCGCCCCCTATCATAAAAGGGCGGGTGAAGCAAGAGTTCCGTAGTCAAAGAGCTACACCCTCCAGGTCGAGTTGAATGAAAATTGAAAGCCTGGAAGAAGCAACTCCAAACTGAGAATGCTTAGTCATAGCATCTCCCTGCAAGGTGGTCAAGATCCTCAACCCGCCCGCCTACAGAGAATACAACACGTAGGCCCTAACAGACCCATCTTATACCAATACACTTATAGCACTATTAGAGGATATGACTAAAGGGACAACTTAGGGTTGTATTTGACTTTTTTTTCTTTTTTTTAATCAATAGTGAGAAGTAGGCGTGGATTGACTATTGAGTTTGCTGGTTGTGGTGGTTGTAGATAGTAGTGTAACAGCCCAAGCCCGGGCTAGCAGATATTGTCCTCTTTGGCTTTTCCGTTCCGAGAAGGTTGTAAAACGCATTCCAAGGGAGAAGTTTCCACACCTTTATAAGGAATGCTTCATTCTTCTCTCCAATCGATTTGGGATCTCACAATCCACCCCCCTTGAGGGCCTAGCGTCCTCGCTGGTACACCGCCCGGTGTCTGGCTTTGATACTATTTGTAATAGCTCAAGCCCACTGCTAGCAAATATTGTCCTCTTTAGGCTTTCCCTTCTAAGCTTTAAAATGCGTCCACTAGGGAGAGATTTGCACACCCTTATAAGGAATACTTCGTTCTCTTCTCCAACTGATGTGGGATCTCATAAGTAGGCTTTCAGGAGACGGTCTAAAATTGTTCTAGTATAGAAAGAACGGGAAACTTTCAACGAGCTAAAACTAATAAAGGTCGATAGGAAGTTTCAGAATTTCTTGACAAAATTCGTTCTACGAAGATATCCATGGAAGAATAGTTTCGTTGATGTAAGAATACTTTTATTGATGTATTCTTGTTGAGAAAGTTTTTTTTTGCCATCGACTCTAGTGGTGTCATGTGTAGCCGAGGGTTAGATTTCTCAGAACTATATACTTCTAGCTCCTTTCTTTGTGCTTGGCCTTTATTTCTGCACGTCTTTGCTCTCTTCTAGCTTCAATTTTCTCAACAATACCACCTTCAATAGAGAAAGAACAAAAGAAAAAAGAACTTATTTGTATGAATTAGATCATATCTAATTTCCAACGTTTCCCCCTTCAGAAAAAAGAACACTTATTTCCTCTGCTGCTTTGTGAAATCTTAGGTGATATGCACCCTTGGAACTGCAGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTCGATCGACTGGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCTTCCTGAATTCCTCACTTAACTACATATACGTTATAAGTGGCAAGGTTAGTGATGACACATAAAAAGAAAAAAAAAGGAAGATAAAGATTAGAATAAAATAGGCTTGGTTTCATAGCCTTCATACTTATTTCATGGTCAGTAAATTATTCGTTCTCTAAACTTCGTATAAAAAATTGTTTTAGTCCTTGCCAAAAGTGTTCATAAATAGTTAAACATAAGTTTAGGGGTGGGTTTCGAAACGAAATCGGATTTTTGGAAATGCTTTACGAAAATAGCTGCAAGGACTATAACAACTTTCTATGCAAAGTGTATGGACTAAAATAGTAAAACATTTCGAAGTTTAAAGATCAAAATAAAATATGCATGAAAGTTCGAATATCATAGTCGAGTTTAAACGAGTATAGCTGGAATTCTGTTCTCTATGATTCAATATAATTTTGTCCTTGTAGCTTTCTGTAGACTATGAGTAGACTATGAAAGTATTTGTTCTTTTTGCCTCAAATCTTTAGATCATGAGTAGAAACAGCAAGGGAGGGTAGCTTCTGATGTAATATTATGAGGCAGATTTGGTGTATTATTTGGTTGTAATGGTTTTTTTGCGCAATGAAATTGGATTCGTAATAAAAAAACGAAACGAAATGAAAGGATACCTGAACACATTGTTGTACTGAGGCTGAGTATGTGTTGTAGTACTGGGGCTGAGTACAACAGATTGTTAAGAATATAGTAAAAACACATGGTTACCGAGACTGAGTACGAAATTAATATTTTCGATACAACACATTAAGAATACATTGTTGTACTGAGGCTGAGTACGTGACAATAACTGAATCTGGAAAGAAGACGTTATGGATGATTGATTATTTGGAAGAATTGAGCAAGAAGCAGCACAAAAAGATTCTTTATAGAGATAGTCAAAGTGTCATACAGTTGGTGAGGAACCTGATCTATCATTTTAAGATAAAACACGGAAGGTGATACCATTTCACTTGTAGGTTAGTGGAAGATGGTGATGTATTTTGAGAAGATAGAGGGTGCAAAGAATCTAGCAAACATGTTGACAAAATGTGTTGATGTTGGAATATTAGGGTTGTGCAAAGTGGTGCAGTGAAGATGCTCATGGATGGTCGTTTGAGAATGAAATTCTTGATTGACTAGATCGGCTAGAATTGTTAGGTTATGGAGCCTATTGCTCATTTATAGTTTATCAACGTTATACATAGTAAAACTATATATGGTAAATGGTAAATTATCATAAATAGTAAATAGTTATATACAGGAAAAAAAACTATATGTATGTATTTATACGGTATCATATATATAGCTTTGAAAATGTACTCCTGTCCTCTGTATTCATGTAGATCTAGTGTGTGCGTTGTTGAGTGATCCTAACAATATTAAATCATAGGCATTGAAATTCTTAATCCAAAAAATAGACGATACAAAAATATTGTGACACTAAAAAAAAATTGCATAAATCAATTGAGACTATACTTGAATGAAAACGATCTCGAGAATAGGAGTCTAAGTTACTATTTATACCCACAAAATCTACCTTCATTTTCAGTGGCTCAATCACGAGAACTCGAAGATTAAACGTAGTTTACTTAGAGCAATTCTATATCGGGTGTCGAATTCAAATATGCTGAAAGAACTCACTCTTAGAAGCGAATGATGTAGAGGAATGCCTGAGCCATCAGCGGTCGAATTCAAATTTCAAATTCTGATCCCAATCTCGGGCGCGGAGGGCGATACAAATA

mRNA sequence

TGGCGCCTGAGTGTAGATGCCCATAACCAGCGTATCAACCCTAGGTAAATAGAAATTTTGGGCGGTTGCAATGAATATAACCATCGTTTTTTGTTCAGCAAAAAACGAAAGCATCTGCAAACGGCTGCTGTTCTTCCACAGCTGATCATGTCCTTACATGCCGCTCTTTCACCGCCGTCCCTCTATTCCATTCGTCATTCTCAGCCGCCATTACCAACCTCTCGGACCTCGATTCTCCCATTCCTTGCAAATTTCTCACACCCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATCATTTGGTGGACGATCGGCGCAATTGGAACCGCTCGATTAGCTCCGACTTCGACATAATCGGTGGCGAAGATGACGAGGACGACGAGGATGAGGAAAATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTCCGGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAAGCGAGCCAGGAAGGCTGTGAGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTCTGTCAATGGGGTACTAATGCTAGCGTTTTTGTGGATTTTGAAGGCATTTCTTGAGGTGATATGCACCCTTGGAACTGCAGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTCGATCGACTGGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCTTCCTGAATTCCTCACTTAACTACATATACGTTATAAGTGGCAAGGTTAGTGATGACACATAAAAAGAAAAAAAAAGGAAGATAAAGATTAGAATAAAATAGGCTTGGTTTCATAGCCTTCATACTTATTTCATGGTCAGTAAATTATTCGTTCTCTAAACTTCGTATAAAAAATTGTTTTAGTCCTTGCCAAAAGTGTTCATAAATAGTTAAACATAAGTTTAGGGGTGGGTTTCGAAACGAAATCGGATTTTTGGAAATGCTTTACGAAAATAGCTGCAAGGACTATAACAACTTTCTATGCAAAGTGTATGGACTAAAATAGTAAAACATTTCGAAGTTTAAAGATCAAAATAAAATATGCATGAAAGTTCGAATATCATAGTCGAGTTTAAACGAGTATAGCTGGAATTCTGTTCTCTATGATTCAATATAATTTTGTCCTTGTAGCTTTCTGTAGACTATGAGTAGACTATGAAAGTATTTGTTCTTTTTGCCTCAAATCTTTAGATCATGAGTAGAAACAGCAAGGGAGGGTAGCTTCTGATGTAATATTATGAGGCAGATTTGGTGTATTATTTGGTTGTAATGGTTTTTTTGCGCAATGAAATTGGATTCGTAATAAAAAAACGAAACGAAATGAAAGGATACCTGAACACATTGTTGTACTGAGGCTGAGTATGTGTTGTAGTACTGGGGCTGAGTACAACAGATTGTTAAGAATATAGTAAAAACACATGGTTACCGAGACTGAGTACGAAATTAATATTTTCGATACAACACATTAAGAATACATTGTTGTACTGAGGCTGAGTACGTGACAATAACTGAATCTGGAAAGAAGACGTTATGGATGATTGATTATTTGGAAGAATTGAGCAAGAAGCAGCACAAAAAGATTCTTTATAGAGATAGTCAAAGTGTCATACAGTTGGTGAGGAACCTGATCTATCATTTTAAGATAAAACACGGAAGGTGATACCATTTCACTTGTAGGTTAGTGGAAGATGGTGATGTATTTTGAGAAGATAGAGGGTGCAAAGAATCTAGCAAACATGTTGACAAAATGTGTTGATGTTGGAATATTAGGGTTGTGCAAAGTGGTGCAGTGAAGATGCTCATGGATGGTCGTTTGAGAATGAAATTCTTGATTGACTAGATCGGCTAGAATTGTTAGGTTATGGAGCCTATTGCTCATTTATAGTTTATCAACGTTATACATAGTAAAACTATATATGGTAAATGGTAAATTATCATAAATAGTAAATAGTTATATACAGGAAAAAAAACTATATGTATGTATTTATACGGTATCATATATATAGCTTTGAAAATGTACTCCTGTCCTCTGTATTCATGTAGATCTAGTGTGTGCGTTGTTGAGTGATCCTAACAATATTAAATCATAGGCATTGAAATTCTTAATCCAAAAAATAGACGATACAAAAATATTGTGACACTAAAAAAAAATTGCATAAATCAATTGAGACTATACTTGAATGAAAACGATCTCGAGAATAGGAGTCTAAGTTACTATTTATACCCACAAAATCTACCTTCATTTTCAGTGGCTCAATCACGAGAACTCGAAGATTAAACGTAGTTTACTTAGAGCAATTCTATATCGGGTGTCGAATTCAAATATGCTGAAAGAACTCACTCTTAGAAGCGAATGATGTAGAGGAATGCCTGAGCCATCAGCGGTCGAATTCAAATTTCAAATTCTGATCCCAATCTCGGGCGCGGAGGGCGATACAAATA

Coding sequence (CDS)

ATGCCGCTCTTTCACCGCCGTCCCTCTATTCCATTCGTCATTCTCAGCCGCCATTACCAACCTCTCGGACCTCGATTCTCCCATTCCTTGCAAATTTCTCACACCCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATCATTTGGTGGACGATCGGCGCAATTGGAACCGCTCGATTAGCTCCGACTTCGACATAATCGGTGGCGAAGATGACGAGGACGACGAGGATGAGGAAAATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTCCGGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAAGCGAGCCAGGAAGGCTGTGAGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTCTGTCAATGGGGTACTAATGCTAGCGTTTTTGTGGATTTTGAAGGCATTTCTTGAGGTGATATGCACCCTTGGAACTGCAGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTCGATCGACTGGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCTTCCTGA

Protein sequence

MPLFHRRPSIPFVILSRHYQPLGPRFSHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS

Homology

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BLAST of Cp4.1LG04g07520 vs. ExPASy Swiss-Prot
Match: F4I3V6 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.2e-19
Identity = 61/168 (36.31%), Postives = 98/168 (58.33%), Query Frame = 0


Query: 8   PSIPFVILSRHYQPLGPRFSHSLQISHTLLRASRR-TSNFSQGVDHLVDDRRNWNRSISS 67
           PS+  +  S  +  + P  S+S+ +     R +R   S+ S        D R +      
Sbjct: 15  PSLTLINASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRRRYESDDRFFGG--GD 74

Query: 68  DFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLV 127
           ++D++  +D   D+D+E +E + S+DLL+RF+ ++F+KVSKR +KA R +LP ++  +LV
Sbjct: 75  NYDVVPDDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLV 134

Query: 128 GFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 175
            F+V+G+L+L  L I +AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 135 SFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

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BLAST of Cp4.1LG04g07520 vs. NCBI nr
Match: XP_023530484.1 (LOW QUALITY PROTEIN: protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 336 bits (861), Expect = 3.96e-115
Identity = 181/200 (90.50%), Postives = 182/200 (91.00%), Query Frame = 0


Query: 5   HRRPSIPFVILSRHYQPLGPR-----FSHSLQISHTLLRASRRTSNFSQGVDHLVDDRRN 64
           H   S P +   RH QP  P       SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRN
Sbjct: 4   HAALSPPSLYSIRHSQPPLPTSRTSIXSHSLQISHTLLRASRRTSNFSQGVDHLVDDRRN 63

Query: 65  WNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQ 124
           WNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQ
Sbjct: 64  WNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQ 123

Query: 125 SIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSH 184
           SIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSH
Sbjct: 124 SIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSH 183

Query: 185 RFDRLDDDQHHAWTGAQPAS 199
           RFDRLDDDQHHAWTGAQPAS
Sbjct: 184 RFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of Cp4.1LG04g07520 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 332 bits (851), Expect = 1.32e-113
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 27  SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE 86
           SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE
Sbjct: 31  SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE 90

Query: 87  EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL 146
           EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL
Sbjct: 91  EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL 150

Query: 147 EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 199
           EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS
Sbjct: 151 EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

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BLAST of Cp4.1LG04g07520 vs. NCBI nr
Match: KAG6588721.1 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 332 bits (851), Expect = 1.32e-113
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 27  SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE 86
           SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE
Sbjct: 31  SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE 90

Query: 87  EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL 146
           EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL
Sbjct: 91  EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL 150

Query: 147 EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 199
           EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS
Sbjct: 151 EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of Cp4.1LG04g07520 vs. NCBI nr
Match: XP_022927841.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata])

HSP 1 Score: 331 bits (848), Expect = 3.79e-113
Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 27  SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE 86
           SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDI+GGEDDEDDEDEENEE
Sbjct: 31  SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIMGGEDDEDDEDEENEE 90

Query: 87  EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL 146
           EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL
Sbjct: 91  EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL 150

Query: 147 EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 199
           EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS
Sbjct: 151 EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of Cp4.1LG04g07520 vs. NCBI nr
Match: XP_022148690.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia])

HSP 1 Score: 310 bits (795), Expect = 4.98e-105
Identity = 168/198 (84.85%), Postives = 179/198 (90.40%), Query Frame = 0


Query: 8   PSIPFVILSRHYQPLGPR-----FSHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNR 67
           PS+ F I   H+QPL         SH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR
Sbjct: 10  PSL-FSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNR 69

Query: 68  SISSDFDIIGGEDDEDDE-DEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSI 127
            ISSDFDI+GGEDDE+DE DEE+EEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSI
Sbjct: 70  PISSDFDIVGGEDDEEDEEDEEDEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSI 129

Query: 128 PTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF 187
           PTKLVGFSVNGVLMLAFLW+LKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF
Sbjct: 130 PTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF 189

Query: 188 DRLDDDQHHAWTGAQPAS 199
           D+LD++QHHAWTGAQPAS
Sbjct: 190 DQLDNEQHHAWTGAQPAS 206

[Close]

BLAST of Cp4.1LG04g07520 vs. ExPASy TrEMBL
Match: A0A6J1JL13 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486160 PE=4 SV=1)

HSP 1 Score: 332 bits (851), Expect = 6.40e-114
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 27  SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE 86
           SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE
Sbjct: 31  SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE 90

Query: 87  EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL 146
           EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL
Sbjct: 91  EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL 150

Query: 147 EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 199
           EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS
Sbjct: 151 EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of Cp4.1LG04g07520 vs. ExPASy TrEMBL
Match: A0A6J1EIN7 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111434609 PE=4 SV=1)

HSP 1 Score: 331 bits (848), Expect = 1.83e-113
Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 27  SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEE 86
           SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDI+GGEDDEDDEDEENEE
Sbjct: 31  SHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIMGGEDDEDDEDEENEE 90

Query: 87  EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL 146
           EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL
Sbjct: 91  EDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFL 150

Query: 147 EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 199
           EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS
Sbjct: 151 EVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of Cp4.1LG04g07520 vs. ExPASy TrEMBL
Match: A0A6J1D3L5 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC111017292 PE=4 SV=1)

HSP 1 Score: 310 bits (795), Expect = 2.41e-105
Identity = 168/198 (84.85%), Postives = 179/198 (90.40%), Query Frame = 0


Query: 8   PSIPFVILSRHYQPLGPR-----FSHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNR 67
           PS+ F I   H+QPL         SH  QISHTLLRASRR SNFSQGVD+LVDDRRNWNR
Sbjct: 10  PSL-FSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLVDDRRNWNR 69

Query: 68  SISSDFDIIGGEDDEDDE-DEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSI 127
            ISSDFDI+GGEDDE+DE DEE+EEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSI
Sbjct: 70  PISSDFDIVGGEDDEEDEEDEEDEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSI 129

Query: 128 PTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF 187
           PTKLVGFSVNGVLMLAFLW+LKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF
Sbjct: 130 PTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF 189

Query: 188 DRLDDDQHHAWTGAQPAS 199
           D+LD++QHHAWTGAQPAS
Sbjct: 190 DQLDNEQHHAWTGAQPAS 206

[Close]

BLAST of Cp4.1LG04g07520 vs. ExPASy TrEMBL
Match: A0A6J1GJK6 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454943 PE=4 SV=1)

HSP 1 Score: 289 bits (740), Expect = 5.16e-97
Identity = 154/196 (78.57%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 9   SIPFVILSRHYQPLGPR-----FSHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRS 68
           S P +     YQP  P       SH  Q+SH LLRASRR SNFSQGVD  VDDRRNWN S
Sbjct: 8   SPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDDRRNWNGS 67

Query: 69  ISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPT 128
           I SDFD+IGGE++E++E++E+EEEDRSLDLLV+FVENVFRKVS+RARKAVRSVLPQSIPT
Sbjct: 68  IGSDFDLIGGEEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARKAVRSVLPQSIPT 127

Query: 129 KLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDR 188
           KLVGF VNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQDIRSHR D+
Sbjct: 128 KLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDIRSHRLDQ 187

Query: 189 LDDDQHHAWTGAQPAS 199
           LDDDQ HAWTGAQPAS
Sbjct: 188 LDDDQPHAWTGAQPAS 203

[Close]

BLAST of Cp4.1LG04g07520 vs. ExPASy TrEMBL
Match: A0A6J1I8W5 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111471074 PE=4 SV=1)

HSP 1 Score: 287 bits (734), Expect = 4.68e-96
Identity = 156/199 (78.39%), Postives = 170/199 (85.43%), Query Frame = 0


Query: 9   SIPFVILSRHYQPLGPR-----FSHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRS 68
           S P +     YQP  P       S   QISH LLRASRR SNFSQGVD+ VDDRRNWN S
Sbjct: 8   SPPSLFAVPQYQPPFPTSRTWLLSQPFQISHALLRASRRASNFSQGVDNPVDDRRNWNGS 67

Query: 69  ISSDFDIIGGEDDE---DDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQS 128
           I SDFD+IGGE++E   +DE++E++EEDRSLDLLV+FVENVFRKVS+RARKAVRSVLPQS
Sbjct: 68  IGSDFDLIGGEEEEAEEEDEEDEDDEEDRSLDLLVQFVENVFRKVSRRARKAVRSVLPQS 127

Query: 129 IPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHR 188
           IPTKLVGF VNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHR
Sbjct: 128 IPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHR 187

Query: 189 FDRLDDDQHHAWTGAQPAS 199
           FD+LDDDQ HAWTGAQPAS
Sbjct: 188 FDQLDDDQPHAWTGAQPAS 206

[Close]

BLAST of Cp4.1LG04g07520 vs. TAIR 10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 192.2 bits (487), Expect = 4.0e-49
Identity = 104/161 (64.60%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 39  ASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFV 98
           ASRR+ +F  G D   DD R+WNR I  ++      D E+D D+++EEEDRSLDLL+RFV
Sbjct: 45  ASRRSRDFINGRDDFADDTRSWNRKIKPEYGFDEDYDGEED-DDDHEEEDRSLDLLLRFV 104

Query: 99  ENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFV 158
           ENVFRK+SKRARKAVRS+LP SI TKLVGFSVNGVL+LAFLWILKAFLEV CTLGT VF 
Sbjct: 105 ENVFRKISKRARKAVRSILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFT 164

Query: 159 SILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 200
           SIL+IRG+W G+ Y+Q+ R++R + L DD   AW G QP S
Sbjct: 165 SILLIRGLWAGVAYMQESRNNRINELADDP-RAWNGMQPVS 203

[Close]

BLAST of Cp4.1LG04g07520 vs. TAIR 10
Match: AT1G69935.1 (short hypocotyl in white light1 )

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-20
Identity = 61/168 (36.31%), Postives = 98/168 (58.33%), Query Frame = 0


Query: 8   PSIPFVILSRHYQPLGPRFSHSLQISHTLLRASRR-TSNFSQGVDHLVDDRRNWNRSISS 67
           PS+  +  S  +  + P  S+S+ +     R +R   S+ S        D R +      
Sbjct: 15  PSLTLINASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRRRYESDDRFFGG--GD 74

Query: 68  DFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLV 127
           ++D++  +D   D+D+E +E + S+DLL+RF+ ++F+KVSKR +KA R +LP ++  +LV
Sbjct: 75  NYDVVPDDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLV 134

Query: 128 GFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 175
            F+V+G+L+L  L I +AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 135 SFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g07520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I3V6	7.2e-19	36.31	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1...	[more]

BLAST of Cp4.1LG04g07520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530484.1	3.96e-115	90.50	LOW QUALITY PROTEIN: protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pe...	[more]
XP_022988955.1	1.32e-113	100.00	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]	[more]
KAG6588721.1	1.32e-113	100.00	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp....	[more]
XP_022927841.1	3.79e-113	99.42	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata]	[more]
XP_022148690.1	4.98e-105	84.85	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia]	[more]

BLAST of Cp4.1LG04g07520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JL13	6.40e-114	100.00	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EIN7	1.83e-113	99.42	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1D3L5	2.41e-105	84.85	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1GJK6	5.16e-97	78.57	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1I8W5	4.68e-96	78.39	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Cp4.1LG04g07520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33780.1	4.0e-49	64.60	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G69935.1	5.1e-20	36.31	short hypocotyl in white light1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35474:SF1	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 26..199
IPR039324	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1	PANTHER	PTHR35474	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 26..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g07520.1	Cp4.1LG04g07520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane