Cp4.1LG04g07370 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g07370
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Photosystem I reaction centre subunit N
Location	Cp4.1LG04: 4075090 .. 4075934 (-)
RNA-Seq Expression	Cp4.1LG04g07370
Synteny	Cp4.1LG04g07370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGGGATATGGACCAAGAAAGCCTCATCTGTTCATCAACCTCATCCACAACCCCAACACTCTCTCATTCCCATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTAAACCAATTCGCTTCCTCAAACGTTCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTTCGCCAGTTCTGACATCCAACGAAGAGGCCTCCTCTTATCTGCCGCCGTTGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGTGTGCTGCATTAATTCTTCCCTCTGTGTTCCATTTTTGAATGCTCGACTTTCGTTTCAATCCAAACATTTTATGTGTTGTTAGGGTACCTCAAGAAATCCGAAGAAAACAAAGAAAAGAACGACAAGGAGGTAAGTGCTTTTGTAATTTGTAATTTGGATTTGATTAATGTTTTGAAATTTGGGTTATTGGGTTTGTAATTAACAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAATGGCTTAAGAGAAACAAATAAATGAATTTCCATTCATTCTATCCTTTTCTTTTCATTTCTTCTAATCTCGTCTATCAATTATCATTCTAACGAGGATCGTTCAACGTTACAAATATTTAAAATTTTCTATCTATTAAAATTATTCGTGATATTATTCAATTTGAGCCTAGGGTTCATCAAGAACGCTTTTGTACCAATGAAGTTCCTGTCCTAATTTATACACGGTAGACT

mRNA sequence

GGAGGGGATATGGACCAAGAAAGCCTCATCTGTTCATCAACCTCATCCACAACCCCAACACTCTCTCATTCCCATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTAAACCAATTCGCTTCCTCAAACGTTCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTTCGCCAGTTCTGACATCCAACGAAGAGGCCTCCTCTTATCTGCCGCCGTTGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGGTACCTCAAGAAATCCGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAATGGCTTAAGAGAAACAAATAAATGAATTTCCATTCATTCTATCCTTTTCTTTTCATTTCTTCTAATCTCGTCTATCAATTATCATTCTAACGAGGATCGTTCAACGTTACAAATATTTAAAATTTTCTATCTATTAAAATTATTCGTGATATTATTCAATTTGAGCCTAGGGTTCATCAAGAACGCTTTTGTACCAATGAAGTTCCTGTCCTAATTTATACACGGTAGACT

Coding sequence (CDS)

ATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTAAACCAATTCGCTTCCTCAAACGTTCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTTCGCCAGTTCTGACATCCAACGAAGAGGCCTCCTCTTATCTGCCGCCGTTGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGGTACCTCAAGAAATCCGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAATGGCTTAAGAGAAACAAATAA

Protein sequence

MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK

Homology

[Close]

BLAST of Cp4.1LG04g07370 vs. NCBI nr
Match: XP_023531124.1 (uncharacterized protein LOC111793462 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241 bits (615), Expect = 7.81e-80
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS
Sbjct: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60

Query: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE
Sbjct: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120

Query: 121 AEKGIIEWLKRNK 133
           AEKGIIEWLKRNK
Sbjct: 121 AEKGIIEWLKRNK 133

[Close]

BLAST of Cp4.1LG04g07370 vs. NCBI nr
Match: XP_022927848.1 (uncharacterized protein LOC111434615 [Cucurbita moschata])

HSP 1 Score: 238 bits (607), Expect = 1.30e-78
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSAST ASSDIQRRGLLLS
Sbjct: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLS 60

Query: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE
Sbjct: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120

Query: 121 AEKGIIEWLKRNK 133
           AEKGIIEWLKRNK
Sbjct: 121 AEKGIIEWLKRNK 133

[Close]

BLAST of Cp4.1LG04g07370 vs. NCBI nr
Match: KAG7022506.1 (hypothetical protein SDJN02_16238, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237 bits (605), Expect = 2.62e-78
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSAST ASSDIQRRGL+LS
Sbjct: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLILS 60

Query: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE
Sbjct: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120

Query: 121 AEKGIIEWLKRNK 133
           AEKGIIEWLKRNK
Sbjct: 121 AEKGIIEWLKRNK 133

[Close]

BLAST of Cp4.1LG04g07370 vs. NCBI nr
Match: XP_022989008.1 (uncharacterized protein LOC111486201 [Cucurbita maxima])

HSP 1 Score: 223 bits (569), Expect = 6.84e-73
Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTT     A+T ASSDIQRRGLLLS
Sbjct: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTT-----ATTSASSDIQRRGLLLS 60

Query: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE
Sbjct: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120

Query: 121 AEKGIIEWLKRNK 133
           AEKGIIEWLKRNK
Sbjct: 121 AEKGIIEWLKRNK 128

[Close]

BLAST of Cp4.1LG04g07370 vs. NCBI nr
Match: KAG6588719.1 (hypothetical protein SDJN03_17284, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205 bits (522), Expect = 7.79e-65
Identity = 117/123 (95.12%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSAS    SDIQRRGL+LS
Sbjct: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSAS----SDIQRRGLILS 60

Query: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           AAVAAAVDSRT+LLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE
Sbjct: 61  AAVAAAVDSRTDLLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 119

Query: 121 AEK 123
           AEK
Sbjct: 121 AEK 119

[Close]

BLAST of Cp4.1LG04g07370 vs. ExPASy TrEMBL
Match: A0A6J1EM63 (uncharacterized protein LOC111434615 OS=Cucurbita moschata OX=3662 GN=LOC111434615 PE=3 SV=1)

HSP 1 Score: 238 bits (607), Expect = 6.27e-79
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSAST ASSDIQRRGLLLS
Sbjct: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTSASSDIQRRGLLLS 60

Query: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE
Sbjct: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120

Query: 121 AEKGIIEWLKRNK 133
           AEKGIIEWLKRNK
Sbjct: 121 AEKGIIEWLKRNK 133

[Close]

BLAST of Cp4.1LG04g07370 vs. ExPASy TrEMBL
Match: A0A6J1JNZ7 (uncharacterized protein LOC111486201 OS=Cucurbita maxima OX=3661 GN=LOC111486201 PE=3 SV=1)

HSP 1 Score: 223 bits (569), Expect = 3.31e-73
Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTT     A+T ASSDIQRRGLLLS
Sbjct: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTT-----ATTSASSDIQRRGLLLS 60

Query: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120
           AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE
Sbjct: 61  AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSE 120

Query: 121 AEKGIIEWLKRNK 133
           AEKGIIEWLKRNK
Sbjct: 121 AEKGIIEWLKRNK 128

[Close]

BLAST of Cp4.1LG04g07370 vs. ExPASy TrEMBL
Match: A0A1S3C176 (uncharacterized protein LOC103495319 OS=Cucumis melo OX=3656 GN=LOC103495319 PE=3 SV=1)

HSP 1 Score: 177 bits (448), Expect = 9.09e-55
Identity = 106/140 (75.71%), Postives = 114/140 (81.43%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK            A+   SS I RR LLLS
Sbjct: 1   MSSIGQSILMALAVTLNKFASSNVQSVQRNK------------ATATVSSPIGRRDLLLS 60

Query: 61  -------AAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLK 120
                  AA AAAVDSRTELLKRYLKKSEENKEKNDKERLES+YKRNYKDYFEFVEGS+K
Sbjct: 61  TVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYFEFVEGSVK 120

Query: 121 NKDELSEAEKGIIEWLKRNK 133
           NK+ELSEAEKGI+EWLKRNK
Sbjct: 121 NKNELSEAEKGIVEWLKRNK 128

[Close]

BLAST of Cp4.1LG04g07370 vs. ExPASy TrEMBL
Match: A0A6J1D574 (uncharacterized protein LOC111017388 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017388 PE=3 SV=1)

HSP 1 Score: 165 bits (418), Expect = 2.87e-50
Identity = 96/135 (71.11%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQ+ILMALA+T+N+FASSNVQSV RN+            ++  A+SDI RRGLL S
Sbjct: 1   MSSIGQSILMALAVTVNKFASSNVQSVHRNQ------------SAAAAASDIGRRGLLFS 60

Query: 61  AAVAAA--VDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDEL 120
           A  AA   VDSRTELLKRYLKKSE+NKEKNDKERL+S+YKRNYKDYFEFVEGS++NK EL
Sbjct: 61  AVAAAVAPVDSRTELLKRYLKKSEQNKEKNDKERLDSYYKRNYKDYFEFVEGSVRNKSEL 120

Query: 121 SEAEKGIIEWLKRNK 133
           SE EK IIEWL+RNK
Sbjct: 121 SETEKDIIEWLRRNK 123

[Close]

BLAST of Cp4.1LG04g07370 vs. ExPASy TrEMBL
Match: A0A2I4HLI8 (uncharacterized protein LOC109019213 OS=Juglans regia OX=51240 GN=LOC109019213 PE=3 SV=1)

HSP 1 Score: 161 bits (407), Expect = 1.69e-48
Identity = 95/136 (69.85%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSIGQ+ILMAL +T+N+FASSNVQ+V R + KTP +TT TT+      SDI RR LLLS
Sbjct: 1   MSSIGQSILMALTVTVNRFASSNVQAVHRRERKTPSSTTTTTT------SDIGRRCLLLS 60

Query: 61  AAVAA--AVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLK-NKDE 120
             VAA    DSRT+LLK+YLKKSEENK KNDKERL+S+YKRNYKDYFEFVEG+ K N+++
Sbjct: 61  TLVAAPQVADSRTDLLKQYLKKSEENKSKNDKERLDSYYKRNYKDYFEFVEGASKGNQEQ 120

Query: 121 LSEAEKGIIEWLKRNK 133
           LSEAEKGII+WL+RNK
Sbjct: 121 LSEAEKGIIDWLQRNK 130

[Close]

BLAST of Cp4.1LG04g07370 vs. TAIR 10
Match: AT1G49975.1 (INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-31
Identity = 81/137 (59.12%), Postives = 103/137 (75.18%), Query Frame = 0


Query: 1   MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLS 60
           MSSI Q+ILMAL +T+N++ASSNVQ+V+RN  K          + T   +D+ RR +L S
Sbjct: 1   MSSISQSILMALTVTVNKYASSNVQAVRRNDTK--------RHSLTAPPADLGRRNILFS 60

Query: 61  AA--VAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKD-- 120
           +   +AAA+ S  +LL++YLKK+EENK KNDKERL+SFYKRNYKDYFEFVEGS+K K   
Sbjct: 61  STSFIAAALTSSDQLLQKYLKKTEENKAKNDKERLDSFYKRNYKDYFEFVEGSIKGKTEA 120

Query: 121 ELSEAEKGIIEWLKRNK 134
           ELSE+EK I+EWLK NK
Sbjct: 121 ELSESEKRILEWLKANK 129

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g07370 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g07370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531124.1	7.81e-80	100.00	uncharacterized protein LOC111793462 [Cucurbita pepo subsp. pepo]	[more]
XP_022927848.1	1.30e-78	99.25	uncharacterized protein LOC111434615 [Cucurbita moschata]	[more]
KAG7022506.1	2.62e-78	98.50	hypothetical protein SDJN02_16238, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022989008.1	6.84e-73	94.74	uncharacterized protein LOC111486201 [Cucurbita maxima]	[more]
KAG6588719.1	7.79e-65	95.12	hypothetical protein SDJN03_17284, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG04g07370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EM63	6.27e-79	99.25	uncharacterized protein LOC111434615 OS=Cucurbita moschata OX=3662 GN=LOC1114346...	[more]
A0A6J1JNZ7	3.31e-73	94.74	uncharacterized protein LOC111486201 OS=Cucurbita maxima OX=3661 GN=LOC111486201...	[more]
A0A1S3C176	9.09e-55	75.71	uncharacterized protein LOC103495319 OS=Cucumis melo OX=3656 GN=LOC103495319 PE=...	[more]
A0A6J1D574	2.87e-50	71.11	uncharacterized protein LOC111017388 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A2I4HLI8	1.69e-48	69.85	uncharacterized protein LOC109019213 OS=Juglans regia OX=51240 GN=LOC109019213 P...	[more]

BLAST of Cp4.1LG04g07370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49975.1	1.1e-31	59.12	INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid m...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..46
None	No IPR available	PANTHER	PTHR36327	UNNAMED PRODUCT	coord: 15..133
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 49..95 e-value: 1.1E-5 score: 25.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g07370.1	Cp4.1LG04g07370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009522	photosystem I