Cp4.1LG04g07360 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g07360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionNAC domain-containing protein
LocationCp4.1LG04: 4201858 .. 4203214 (+)
RNA-Seq ExpressionCp4.1LG04g07360
SyntenyCp4.1LG04g07360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTGCCATGATCTCGAGTTGCGATGTCGTCGTCAGTCGTACAAGAATGCCTTGCCTTAACTTGAAAAATGTAGTAGCACATGGCTTGAGTATTTAAAGAAATACTCAGTAAGTGACCCCTATCGGGTTTATGCAACAATCACATGCAATGAATGATGGGACCTATCTTTCGTTTCGTTTTCCCTACGGTGCAATCCTAACAGGTAATCGTAGACGTGTATCATATACTTTACACGCAGCTCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACACTGCTGGGCCACTGTCCCTAGCCGGTGGGCATGCTCTGGGAGCCCTTATACCGGGACCCGTTAAAACTAGAACCGTCACGGCAGCGCTATGCAGGGCATAACGATCGTTGTCCTGCCATTGGATGTACGCGTTCGTACCCTCGTGATGGGATAGGGGTATCCCCTAAATTCATGAACACACAATATGCATGAGGTCCCACTAGTCCTATAGTTATCATTAATGAACATAACCCCGTGTCACGTTTTCATGCTTACATGTCATTCTCATTCTCATTTCGTTATTGTTAGTGGGGTTATGTTTCATGCAATTTATAGTATTTCATGCATTTTAATGAACTTTTGGTATATTTTTATTTTATAGTTGGCTTTAAAAAATAATTTAATTGTGTTGGTATGAATTTATTTATTTTTTAACTATGTGTATAAATATTGTTTTTTTATTTTTTTATTTTGCACAGTCCAGTCCAGTCCACATGCACAAATATTGGAATCACATCATCAATTTTCAAATGATGATATGATGTTTGCAAGTTAGTTTGAAAAAGAATTAAATTCAAGCCACTCCCGTTCGGTTGCGTCCTCGCTCCTACTGACGAAGAATTATTGAGCTATTATCTTTTCCACAAGATTGTTGGAGAAATCGTTTCACCAATTGCGCTTTTATCGATCTTTACACACAAGAGCCTTCTCCAATATGGCAACAATGTGGAGGGATCGATGACAAAGAAATCTACTTATTCACAACTTCAATATTAAAAAATCTCGTGTTATTGGAAAAGTTGGCTCTAATGGTACCACTCGTACCGTGAAAACAAATGTCAATGAGTATTTTCTTCGGTTAATAATATTCTAATTGGTAGCATCAAACGGTTTCATTACGAGACTTCTAAAGACAAAGTTAATGACAATGATGGTTCTTGGACCATGCGGGAATACACAATTGATCCTACTCTCATACTAAAAGTGTTCGTGTATGATTTTTACCTACTCTCGTCATTGAATACAAAAATCCCTCAAATTGCCCAACAACTACAACAACCCAAACAAACATGTATGATAAAATCTGTACAGTAA

mRNA sequence

ATGCATGTAATCGTAGACGTGTATCATATACTTTACACGCAGCTCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACACTGCTGGGCCACTGTCCCTAGCCGTCCAGTCCAGTCCACATGCACAAATATTGGAATCACATCATCAATTTTCAAATGATGATATGATGTTTGCAAATTGTTGGAGAAATCGTTTCACCAATTGCGCTTTTATCGATCTTTACACACAAGAGCCTTCTCCAATATGGCAACAATGTGGAGGGATCGATGACAAAGAAATCTACTTATTCACAACTTCAATATTAAAAAATCTCGTGTTATTGGAAAAGTTGGCTCTAATGGTACCACTCGTACCCATCAAACGGTTTCATTACGAGACTTCTAAAGACAAAGTTAATGACAATGATGGTTCTTGGACCATGCGGGAATACACAATTGATCCTACTCTCATACTAAAAGTGTTCGTGTATGATTTTTACCTACTCTCGTCATTGAATACAAAAATCCCTCAAATTGCCCAACAACTACAACAACCCAAACAAACATGTATGATAAAATCTGTACAGTAA

Coding sequence (CDS)

ATGCATGTAATCGTAGACGTGTATCATATACTTTACACGCAGCTCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACACTGCTGGGCCACTGTCCCTAGCCGTCCAGTCCAGTCCACATGCACAAATATTGGAATCACATCATCAATTTTCAAATGATGATATGATGTTTGCAAATTGTTGGAGAAATCGTTTCACCAATTGCGCTTTTATCGATCTTTACACACAAGAGCCTTCTCCAATATGGCAACAATGTGGAGGGATCGATGACAAAGAAATCTACTTATTCACAACTTCAATATTAAAAAATCTCGTGTTATTGGAAAAGTTGGCTCTAATGGTACCACTCGTACCCATCAAACGGTTTCATTACGAGACTTCTAAAGACAAAGTTAATGACAATGATGGTTCTTGGACCATGCGGGAATACACAATTGATCCTACTCTCATACTAAAAGTGTTCGTGTATGATTTTTACCTACTCTCGTCATTGAATACAAAAATCCCTCAAATTGCCCAACAACTACAACAACCCAAACAAACATGTATGATAAAATCTGTACAGTAA

Protein sequence

MHVIVDVYHILYTQLIRASMGSPASSHTAGPLSLAVQSSPHAQILESHHQFSNDDMMFANCWRNRFTNCAFIDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALMVPLVPIKRFHYETSKDKVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKIPQIAQQLQQPKQTCMIKSVQ
Homology
BLAST of Cp4.1LG04g07360 vs. NCBI nr
Match: KAG7017325.1 (NAC domain-containing protein 96, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 2.70e-20
Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 0

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           ID+Y+ EP+ IWQ+CGG++DK+IY FTT   K   ++ K+ L                  
Sbjct: 41  IDIYSHEPAMIWQECGGVEDKDIYFFTTLKKKKSRIIRKVGLNGGTWSGESKGHKVFSSA 100

Query: 132 --VPLVPIKRFHYETSKD-KVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 169
              P+  IKRFHYETS     ND+D SW M EYT+DPT++   FV+D Y++  +  +I
Sbjct: 101 NNAPIGTIKRFHYETSGGVNANDDDCSWIMHEYTLDPTVLTNGFVHDSYVVCLIRKRI 158

BLAST of Cp4.1LG04g07360 vs. NCBI nr
Match: KAG6580573.1 (NAC domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 3.94e-19
Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 0

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           ID+Y+ EP+ IWQ+CGG++DK+IY FTT   K   ++ K+ L                  
Sbjct: 41  IDIYSHEPAMIWQECGGVEDKDIYFFTTLKKKKSRIIRKVGLNGGTWSGESKGHKVFSSA 100

Query: 132 --VPLVPIKRFHYETSKD-KVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 169
              P+  IKRFHYETS     ND+D SW M EYT+DPT++   FV+D Y++  +  +I
Sbjct: 101 NNAPIGTIKRFHYETSGGVNSNDDDCSWIMHEYTLDPTVLTNGFVHDSYVVCLIRKRI 158

BLAST of Cp4.1LG04g07360 vs. NCBI nr
Match: XP_023528741.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.0 bits (232), Expect = 5.09e-19
Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 0

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           ID+Y+ EP+ IWQQCGG++DK+IY FTT   K   ++ K+ +                  
Sbjct: 41  IDIYSHEPAMIWQQCGGMEDKDIYFFTTLKKKKSRIIRKVGINGGTWSGESKGHKVFSSA 100

Query: 132 --VPLVPIKRFHYETSKD-KVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 169
              P+  IKRFHYETS     ND+D SW M EYT+DPT++   FV+D Y++  +  +I
Sbjct: 101 NNAPIGTIKRFHYETSGGVNANDDDCSWIMHEYTLDPTVLTNGFVHDSYVVCLIRKRI 158

BLAST of Cp4.1LG04g07360 vs. NCBI nr
Match: XP_022934631.1 (NAC domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 94.7 bits (234), Expect = 5.91e-19
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 0

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           ID+Y+ EP+ IWQQCGG++DK+IY FTT   K   ++ K+ L                  
Sbjct: 41  IDIYSHEPAMIWQQCGGMEDKDIYFFTTLKKKKSRIIRKVGLNGGTWSGESKGHKVFSSA 100

Query: 132 --VPLVPIKRFHYETSKD-KVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 169
              P+  IKRFHYETS     ND+D SW M EYT+DPT++   FV+D Y++  +  +I
Sbjct: 101 NNAPIGTIKRFHYETSGGVNANDDDCSWIMHEYTLDPTVLTNGFVHDSYVVCLIRKRI 158

BLAST of Cp4.1LG04g07360 vs. NCBI nr
Match: XP_038880323.1 (NAC domain-containing protein 96-like [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 1.28e-16
Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = 0

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKL------------ALMV---- 131
           IDLY +EPS IWQ+CGGID ++IY FT    K   ++ K+            A MV    
Sbjct: 42  IDLYNEEPSQIWQRCGGIDGQDIYFFTNLKKKKSRVIRKVGSNGATWSGENKANMVFSSI 101

Query: 132 ---PLVPIKRFHYETSKDKVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 169
               +  +KRFHYE SK K+NDN  SW M EYT+ PT + K  V+D ++L  L  KI
Sbjct: 102 NNALIGSVKRFHYENSKVKLNDNH-SWIMYEYTLHPTFVPKGVVHDSFVLCKLRNKI 157

BLAST of Cp4.1LG04g07360 vs. ExPASy TrEMBL
Match: A0A6J1F2C3 (NAC domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111441766 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.86e-19
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 0

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           ID+Y+ EP+ IWQQCGG++DK+IY FTT   K   ++ K+ L                  
Sbjct: 41  IDIYSHEPAMIWQQCGGMEDKDIYFFTTLKKKKSRIIRKVGLNGGTWSGESKGHKVFSSA 100

Query: 132 --VPLVPIKRFHYETSKD-KVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 169
              P+  IKRFHYETS     ND+D SW M EYT+DPT++   FV+D Y++  +  +I
Sbjct: 101 NNAPIGTIKRFHYETSGGVNANDDDCSWIMHEYTLDPTVLTNGFVHDSYVVCLIRKRI 158

BLAST of Cp4.1LG04g07360 vs. ExPASy TrEMBL
Match: A0A1S3B8F1 (NAC domain-containing protein 105-like OS=Cucumis melo OX=3656 GN=LOC103487127 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.01e-14
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 0

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           IDLY  EPS IWQ+CGG+D +++Y FTT   K   ++ K+                    
Sbjct: 41  IDLYIHEPSEIWQKCGGVDKQDVYFFTTLKKKKSRIIRKVGSNGNTWSCENRARQVFSST 100

Query: 132 ---VPLVPIKRFHYET--SKDKVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 169
              + L  +KRFHY+   +KD  + ND +W M EYT+DP+++ K  V+D Y+L  +  KI
Sbjct: 101 IDHLLLGSVKRFHYQKPKAKDCTDINDCTWIMYEYTLDPSIVPKGLVHDSYVLCMIRKKI 160

BLAST of Cp4.1LG04g07360 vs. ExPASy TrEMBL
Match: A0A5A7TSB0 (NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001480 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.05e-14
Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 0

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           IDLY  EPS IWQ+CGG+D +++Y FTT   K   ++ K+                    
Sbjct: 41  IDLYIHEPSEIWQKCGGVDKQDVYFFTTLKKKKSRIIRKVGSNGNTWSCENRARQVFSST 100

Query: 132 ---VPLVPIKRFHYET--SKDKVNDNDGSWTMREYTIDPTLILKVFVYDFYLL 162
              + L  +KRFHY+   +KD  + ND +W M EYT+DP+++ K  V+D Y+L
Sbjct: 101 IDHLLLGSVKRFHYQKPKAKDCTDINDCTWIMYEYTLDPSIVPKGLVHDSYVL 153

BLAST of Cp4.1LG04g07360 vs. ExPASy TrEMBL
Match: A0A5A7UPM7 (NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00950 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.57e-12
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALMVPLVP------------ 131
           ID+YTQEP  IW+QCGG++ ++++ FTT   +   ++ K+     +              
Sbjct: 41  IDIYTQEPPQIWEQCGGVEGRDVHFFTTLKKRKSRIIRKVGSNGAMWSGESKATKVFSHD 100

Query: 132 ------IKRFHYETSK-DKVND--NDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 169
                  KRFHYE SK  KV+D  N  SW M EYT+ P L+ +  ++D ++L  L  KI
Sbjct: 101 NTLVGTFKRFHYENSKMTKVDDCNNIYSWIMYEYTLQPNLVPQGVIHDSFVLCMLRKKI 159

BLAST of Cp4.1LG04g07360 vs. ExPASy TrEMBL
Match: A0A5D3BHG6 (NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00980 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.57e-12
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALMVPLVP------------ 131
           ID+YTQEP  IW+QCGG++ ++++ FTT   +   ++ K+     +              
Sbjct: 41  IDIYTQEPPQIWEQCGGVEGRDVHFFTTLKKRKSRIIRKVGSNGAMWSGESKATKVFSHD 100

Query: 132 ------IKRFHYETSK-DKVND--NDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 169
                  KRFHYE SK  KV+D  N  SW M EYT+ P L+ +  ++D ++L  L  KI
Sbjct: 101 NTLVGTFKRFHYENSKMTKVDDCNNIYSWIMYEYTLQPNLVPQGVIHDSFVLCMLRKKI 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7017325.12.70e-2040.68NAC domain-containing protein 96, partial [Cucurbita argyrosperma subsp. argyros... [more]
KAG6580573.13.94e-1940.68NAC domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia... [more]
XP_023528741.15.09e-1940.68transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo][more]
XP_022934631.15.91e-1941.53NAC domain-containing protein 12-like [Cucurbita moschata][more]
XP_038880323.11.28e-1643.59NAC domain-containing protein 96-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1F2C32.86e-1941.53NAC domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111441... [more]
A0A1S3B8F11.01e-1436.67NAC domain-containing protein 105-like OS=Cucumis melo OX=3656 GN=LOC103487127 P... [more]
A0A5A7TSB07.05e-1437.17NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=11... [more]
A0A5A7UPM77.57e-1235.29NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=11... [more]
A0A5D3BHG67.57e-1235.29NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=11... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07360.1Cp4.1LG04g07360.1mRNA