Cp4.1LG04g05730 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g05730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	54S ribosomal protein L37, mitochondrial-like
Location	Cp4.1LG04: 5603915 .. 5606525 (-)
RNA-Seq Expression	Cp4.1LG04g05730
Synteny	Cp4.1LG04g05730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAACATTAAAAAAAAAAAAAAAAAAAAAAAACTAATTTAACAAAAATAAAAGAAAGAGAGATAGAGAAGAGTCCGTAGTCGAAGCCCTAAGTTCTAACTGTGTGTAAGGTGCATCTCTTTTTCTCCATTGCCGAACTCCGATTCTCATTCTCAATCTCCGCCATTTCTGTTGCTTTCTTCTCCGTCAACTACAGGTATCTTCCTCGTCCTCCTCCTTATTGTCATCTTGTTCACTGTATTTCTTTCGTAATCATGTTTAGAACGAAACATCTTTCGTAATGTGAGAATTTGGACTTACCTGGCTGTCCTTTTGATGTGTGGAGCTTCCTAATCTTGGCTGTTTATCACTAATATTATGAGGACTCAACGAATTTGAATTTTGTTGGTTCATCTTTTCCGGATTTCTTAGGTTAAATTTCGTTTTGGTTCTAGGAATTAGTTTAACATAAAAACAGATTTCGGTTTTCGTTAATCACCTTTAGACTCCAAAAACTTGAATTATTAGGCTGCAGATTCTCAAACTCCGCTTCGCGTTTCAATATCTGTTCGATTTACCATGCCAAAACTTGTAGGCTTATTAATATGATTTTGAAGGAAAATGACGATCCAAAAACTTGAATTATTGAGTATGTCTGTTTGATGATAATGGTATTATGAGTTGCAGAAGGAAAAATGGCTATGAGCCAAATTAGATTGGTTAGAAGAAGCCTTCTGAATACCAAAGAAGATCTGATAAAATTGACAAATGTTCGAACATTTGCTGCTGGGGGCAAAAAGAAGGGTTCTAAAGGAGGGGGTGCGGCTACTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAATCTACCACTGTAGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTCATGGCAGATTCGGAGTACCCTGATTGGCTGTGGCGTTTGATCGATAAGCGTCCAGCTCTTAGTGAATTACGAAGGAAGGATGCCAAAACGCTTCCCTATGAGGATCTCAAGCGCTTTGTTAAGTTGGATACTCGAGCAAGGATTAAGGAAAACAACTCTAGTAAGGCGAAGAATTGATGTAAGAATCTAACCCAAGCTTTGTTGTTATTGTTTCTTTTATTAGTTTTTTGCAGCTCTTTCTTCCATAAAAATCGTATGATTAAGGCTAAATTACAAGTTTAGTCTCTTGACTTTCGTGGTTGTTTCAATTAGATCTCTGAGCTTTTATAAGTATTTGAATCTTGACATATCCAGCGTTTTAAAAACTTCATGATTTACTAGAAACTTTGCTGAACTTGTAATTTTTCGTTTACAATCGCATCCCGGTTCACGACTTGGAACACTGGATTAGTTATATGCTTGTCATAGCTAACAAGTTTCGTGTGTGATCCGTCTTGCTATCACCTTTTCTCCCTTTTCGACATTGCTGCATTCGAAGCCTGTTTGATGTCTACTTTCTGTTAATTTCTGCAAGCATATTCAAACCCGACCAGCTCGGTGCAAGTCGATAGAATTGATAAGTACTAACAAATCTTGTTACAAACCTTCTCCTTTTGCAGAAAACATCAGTTAGGGGTCGAGTCAATCTCCATGAAAACAAGAAAGAGTATGGTTTTTTTTTTTTTTTTTTTTTTTTGNAATTGTCAAAATTTTGAATATGAATAGAACACTCTATGCCCATTAGATTCTTTTTATCTTTCACATCTAGTCAACTTTCTTGTCCTAAAAGGATGCTTTTGGAATCAACCGATTCCGAAATCGGTTTTCTTGACGAGTAACCAAGTGTTCGATGAAAAAAATCAAATAGCAAGCAACCCTGAAAAGAAACTATGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGTCGACGCATTTTAAAGCCTTGAGGGGAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGCCATTACAAATGGTATCAGAGCCAGATTCCGGACGATGTGCTAGCCTTCTCGCTGTTTCCCGAAGGGGGTAGATACGAGGCGGTGGGCCCCAAAGGGAGAGATTGGAGGAAAGAAAGAGTGTCAGCGAGGACGCTGGACCCCGAATGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACACGTTTTAAAGCCTTGAGGGGAAGCCCAAATAGGACAATATCTGTTAGCAATGGATCTGGGCCATTACAAAAACAAAAAGAATCCCATTAGCTACGAGGAATTGGTCGGAGTAAAATCTAGCTACGAGGAATTGGTCGGAGTAAAATCGTTAGTGACATAAACATTTGTTTGTTTTTTTGTTTCGATGTTTCTATGATGAGAAGTTTGGTGTAAAATCGTTAGTGACATAAACATCAGTTTGTTTGTTTGTTTGTTTCGATGTTTGTATGATGAGAAGTTTTGTGTTTCATTGAATATCGACCATGTATATAATATCGAACATCTGTCTTTTTTTTTTTTTTTTTTTACACTCCAATTGGTTTTAGAATTTCATGTGTGTTTATTCATCAATGATATTTTTACAACATTTATTC

mRNA sequence

TTAAACATTAAAAAAAAAAAAAAAAAAAAAAAACTAATTTAACAAAAATAAAAGAAAGAGAGATAGAGAAGAGTCCGTAGTCGAAGCCCTAAGTTCTAACTGTGTGTAAGGTGCATCTCTTTTTCTCCATTGCCGAACTCCGATTCTCATTCTCAATCTCCGCCATTTCTGTTGCTTTCTTCTCCGTCAACTACAGAAGGAAAAATGGCTATGAGCCAAATTAGATTGGTTAGAAGAAGCCTTCTGAATACCAAAGAAGATCTGATAAAATTGACAAATGTTCGAACATTTGCTGCTGGGGGCAAAAAGAAGGGTTCTAAAGGAGGGGGTGCGGCTACTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAATCTACCACTGTAGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTCATGGCAGATTCGGAGTACCCTGATTGGCTGTGGCGTTTGATCGATAAGCGTCCAGCTCTTAGTGAATTACGAAGGAAGGATGCCAAAACGCTTCCCTATGAGGATCTCAAGCGCTTTGTTAAGTTGGATACTCGAGCAAGGATTAAGGAAAACAACTCTAGTAAGGCGAAGAATTGATAAAACATCAGTTAGGGGTCGAGTCAATCTCCATGAAAACAAGAAAGAGTATGGTTTTTTTTTTTTTTTTTTTTTTTTGNAATTGTCAAAATTTTGAATATGAATAGAACACTCTATGCCCATTAGATTCTTTTTATCTTTCACATCTAGTCAACTTTCTTGTCCTAAAAGGATGCTTTTGGAATCAACCGATTCCGAAATCGGTTTTCTTGACGAGTAACCAAGTGTTCGATGAAAAAAATCAAATAGCAAGCAACCCTGAAAAGAAACTATGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGTCGACGCATTTTAAAGCCTTGAGGGGAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGCCATTACAAATGGTATCAGAGCCAGATTCCGGACGATGTGCTAGCCTTCTCGCTGTTTCCCGAAGGGGGTAGATACGAGGCGGTGGGCCCCAAAGGGAGAGATTGGAGGAAAGAAAGAGTGTCAGCGAGGACGCTGGACCCCGAATGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACACGTTTTAAAGCCTTGAGGGGAAGCCCAAATAGGACAATATCTGTTAGCAATGGATCTGGGCCATTACAAAAACAAAAAGAATCCCATTAGCTACGAGGAATTGGTCGGAGTAAAATCTAGCTACGAGGAATTGGTCGGAGTAAAATCGTTAGTGACATAAACATTTGTTTGTTTTTTTGTTTCGATGTTTCTATGATGAGAAGTTTGGTGTAAAATCGTTAGTGACATAAACATCAGTTTGTTTGTTTGTTTGTTTCGATGTTTGTATGATGAGAAGTTTTGTGTTTCATTGAATATCGACCATGTATATAATATCGAACATCTGTCTTTTTTTTTTTTTTTTTTTACACTCCAATTGGTTTTAGAATTTCATGTGTGTTTATTCATCAATGATATTTTTACAACATTTATTC

Coding sequence (CDS)

ATGGCTATGAGCCAAATTAGATTGGTTAGAAGAAGCCTTCTGAATACCAAAGAAGATCTGATAAAATTGACAAATGTTCGAACATTTGCTGCTGGGGGCAAAAAGAAGGGTTCTAAAGGAGGGGGTGCGGCTACTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAATCTACCACTGTAGTTGGTGCCAATATTCTTAAGGAAGGTGCAGATCCAAAAGTCATGGCAGATTCGGAGTACCCTGATTGGCTGTGGCGTTTGATCGATAAGCGTCCAGCTCTTAGTGAATTACGAAGGAAGGATGCCAAAACGCTTCCCTATGAGGATCTCAAGCGCTTTGTTAAGTTGGATACTCGAGCAAGGATTAAGGAAAACAACTCTAGTAAGGCGAAGAATTGA

Protein sequence

MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKSTTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTRARIKENNSSKAKN

Homology

[Close]

BLAST of Cp4.1LG04g05730 vs. ExPASy Swiss-Prot
Match: Q9CPW3 (39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.5e-04
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 25 NVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKSTT-VVGANILKEGADPKVMADSEYP 84
          ++R +A     KG KGG AA       + +   + TT  +G NI KEG D  + ADSEYP
Sbjct: 31 SIREYAKKPVGKGGKGGVAAEALKDPEVCTDPTQLTTHAMGVNIYKEGQDVALKADSEYP 90

Query: 85 DWLWRL 90
           WL+++
Sbjct: 91 TWLFQV 96

[Close]

BLAST of Cp4.1LG04g05730 vs. NCBI nr
Match: XP_023530063.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254 bits (649), Expect = 5.49e-85
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST
Sbjct: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 134
           RARIKENNSSKAKN
Sbjct: 121 RARIKENNSSKAKN 134

[Close]

BLAST of Cp4.1LG04g05730 vs. NCBI nr
Match: KAG7022683.1 (hypothetical protein SDJN02_16417 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253 bits (645), Expect = 2.24e-84
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           MAMSQIRLVRRSLLN+KEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST
Sbjct: 1   MAMSQIRLVRRSLLNSKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 134
           RARIKENNSSKAKN
Sbjct: 121 RARIKENNSSKAKN 134

[Close]

BLAST of Cp4.1LG04g05730 vs. NCBI nr
Match: XP_022928329.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata] >XP_022928331.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 246 bits (628), Expect = 8.47e-82
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           MAMSQIRLVRRSLLNTK DLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST
Sbjct: 1   MAMSQIRLVRRSLLNTK-DLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSEL+RKDAKTLPYEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELQRKDAKTLPYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 134
           RARIKENNSSKAKN
Sbjct: 121 RARIKENNSSKAKN 133

[Close]

BLAST of Cp4.1LG04g05730 vs. NCBI nr
Match: XP_022989738.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 239 bits (610), Expect = 4.55e-79
Identity = 131/134 (97.76%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           MAMSQIRL RRSLLNTK DLIKLTNVRTFAAGGKKKGSKGG AATDAPKASILSKEVKST
Sbjct: 1   MAMSQIRLFRRSLLNTK-DLIKLTNVRTFAAGGKKKGSKGG-AATDAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 134
           RARIKENNSSKAKN
Sbjct: 121 RARIKENNSSKAKN 132

[Close]

BLAST of Cp4.1LG04g05730 vs. NCBI nr
Match: XP_038883607.1 (54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_038883608.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 202 bits (513), Expect = 2.88e-64
Identity = 111/135 (82.22%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGK-KKGSKGGGAATDAPKASILSKEVKS 60
           M MSQIRL RRS++N+K DLI+LT+VRTFAAGGK KKGSKGG AA DAPKAS LSKEVKS
Sbjct: 1   MVMSQIRLFRRSIVNSK-DLIQLTSVRTFAAGGKSKKGSKGG-AAADAPKASTLSKEVKS 60

Query: 61  TTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLD 120
           TTVVGANILKEGADPK+MADSEYP WLW L+DK P LSELRRK+ +TLPY DLKRFVKLD
Sbjct: 61  TTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKLD 120

Query: 121 TRARIKENNSSKAKN 134
           TRA+IKENNS+KAKN
Sbjct: 121 TRAKIKENNSTKAKN 133

[Close]

BLAST of Cp4.1LG04g05730 vs. ExPASy TrEMBL
Match: A0A6J1EKI4 (54S ribosomal protein L37, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435190 PE=4 SV=1)

HSP 1 Score: 246 bits (628), Expect = 4.10e-82
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           MAMSQIRLVRRSLLNTK DLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST
Sbjct: 1   MAMSQIRLVRRSLLNTK-DLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSEL+RKDAKTLPYEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELQRKDAKTLPYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 134
           RARIKENNSSKAKN
Sbjct: 121 RARIKENNSSKAKN 133

[Close]

BLAST of Cp4.1LG04g05730 vs. ExPASy TrEMBL
Match: A0A6J1JQ61 (54S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111486735 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 2.20e-79
Identity = 131/134 (97.76%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           MAMSQIRL RRSLLNTK DLIKLTNVRTFAAGGKKKGSKGG AATDAPKASILSKEVKST
Sbjct: 1   MAMSQIRLFRRSLLNTK-DLIKLTNVRTFAAGGKKKGSKGG-AATDAPKASILSKEVKST 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120

Query: 121 RARIKENNSSKAKN 134
           RARIKENNSSKAKN
Sbjct: 121 RARIKENNSSKAKN 132

[Close]

BLAST of Cp4.1LG04g05730 vs. ExPASy TrEMBL
Match: A0A6J1DJG1 (54S ribosomal protein L37, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111021461 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 1.85e-64
Identity = 112/134 (83.58%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKST 60
           MAMSQ RL R S++N K D IK+T+VRTFAAGGKKKGSKGG AA D PKASILSKEVKS+
Sbjct: 1   MAMSQSRLFR-SIINAK-DAIKVTSVRTFAAGGKKKGSKGG-AAADGPKASILSKEVKSS 60

Query: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120
           TVVGANILKEGADPKVMADSEYPDWLWRLIDK PALSELRRK+ + LPYEDLKRFVKLD 
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDN 120

Query: 121 RARIKENNSSKAKN 134
           RA IKENNS KAKN
Sbjct: 121 RASIKENNSIKAKN 131

[Close]

BLAST of Cp4.1LG04g05730 vs. ExPASy TrEMBL
Match: A0A1S3B544 (54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 2.69e-62
Identity = 105/134 (78.36%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MAMSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGK-KKGSKGGGAATDAPKASILSKEVKS 60
           M +SQIR  RR+++ + +DLI+LT+VR+FAAGGK KKGSKGG AA DAPKASILSKEVKS
Sbjct: 1   MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGG-AAADAPKASILSKEVKS 60

Query: 61  TTVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLD 120
           TTVVGANILKEGADPK+MADSEYP WLW L+DK P LSELRRK+A++LPY DL+RFVKLD
Sbjct: 61  TTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLD 120

Query: 121 TRARIKENNSSKAK 133
           TRARIKENNS KAK
Sbjct: 121 TRARIKENNSIKAK 133

[Close]

BLAST of Cp4.1LG04g05730 vs. ExPASy TrEMBL
Match: A0A0A0KYS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1)

HSP 1 Score: 195 bits (496), Expect = 5.08e-62
Identity = 104/132 (78.79%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 3   MSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGK-KKGSKGGGAATDAPKASILSKEVKSTT 62
           MSQ+RL RR+++ + ++LI+LT+VRTFAAGGK KKGSKGG AA DAPKASILSKEVKSTT
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGG-AAADAPKASILSKEVKSTT 60

Query: 63  VVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTR 122
           VVGANILKEGADPK+MADSEYP WLW L++K P LSELRRK+A++LPY DLKRF+KLDTR
Sbjct: 61  VVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTR 120

Query: 123 ARIKENNSSKAK 133
           ARIKENNS KAK
Sbjct: 121 ARIKENNSIKAK 131

[Close]

BLAST of Cp4.1LG04g05730 vs. TAIR 10
Match: AT3G01740.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-40
Identity = 88/134 (65.67%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 3   MSQIRLVRRSLLNTKEDLIKLTNVRTFAAGGK--KKGSKGGGAATDAPKASILSKEVKST 62
           M++I L+R S   + +D+++    RTFAA     KKG KGGG A+DAPK S L+KE+KST
Sbjct: 1   MNRIGLIRGS---SSKDVVR----RTFAAAASKAKKGGKGGG-ASDAPKGSSLTKEIKST 60

Query: 63  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 122
           TVVGAN LK+G+DPK++ DS+YPDWLW L+DKRPALSELRRK+ +TLPY+DLKRFVKLDT
Sbjct: 61  TVVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDT 120

Query: 123 RARIKENNSSKAKN 135
           R +IKENNS KAKN
Sbjct: 121 RGKIKENNSIKAKN 126

[Close]

BLAST of Cp4.1LG04g05730 vs. TAIR 10
Match: AT5G14290.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 141.0 bits (354), Expect = 7.1e-34
Identity = 79/133 (59.40%), Postives = 101/133 (75.94%), Query Frame = 0


Query: 3   MSQIRLVRRSLLNTKEDLIKLTNVRTFA-AGGKKKGSKGGGAATDAPKASILSKEVKSTT 62
           M+ IR+   S+  +K D+++    RTFA A GK K    G    DAPKAS LSKE+KS+ 
Sbjct: 1   MNLIRMFGDSISRSK-DVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSM 60

Query: 63  VVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTR 122
           VV AN LK+G DPK++ +S++PD+LW L+DKRPALSELRRK+ +TL ++DLKRFVKLDTR
Sbjct: 61  VVSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTR 120

Query: 123 ARIKENNSSKAKN 135
           ARIKEN+S KAKN
Sbjct: 121 ARIKENHSIKAKN 132

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g05730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CPW3	7.5e-04	39.39	39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1...	[more]

BLAST of Cp4.1LG04g05730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530063.1	5.49e-85	100.00	54S ribosomal protein L37, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
KAG7022683.1	2.24e-84	99.25	hypothetical protein SDJN02_16417 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022928329.1	8.47e-82	98.51	54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata] >XP_022928331...	[more]
XP_022989738.1	4.55e-79	97.76	54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1...	[more]
XP_038883607.1	2.88e-64	82.22	54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_0388...	[more]

BLAST of Cp4.1LG04g05730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKI4	4.10e-82	98.51	54S ribosomal protein L37, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JQ61	2.20e-79	97.76	54S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1DJG1	1.85e-64	83.58	54S ribosomal protein L37, mitochondrial-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A1S3B544	2.69e-62	78.36	54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0KYS4	5.08e-62	78.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g05730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01740.1	2.3e-40	65.67	Mitochondrial ribosomal protein L37	[more]
AT5G14290.1	7.1e-34	59.40	Mitochondrial ribosomal protein L37	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013870	Ribosomal protein L37, mitochondrial	PFAM	PF08561	Ribosomal_L37	coord: 53..95 e-value: 5.7E-13 score: 49.5
IPR013870	Ribosomal protein L37, mitochondrial	PANTHER	PTHR28595	39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL	coord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g05730.1	Cp4.1LG04g05730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome