Cp4.1LG04g05340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g05340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	Cp4.1LG04: 5912804 .. 5913376 (+)
RNA-Seq Expression	Cp4.1LG04g05340
Synteny	Cp4.1LG04g05340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTCTCTCCACCGCTTCTCTCCAATTCCCATCTTGTTCTTCATCTTCTTTTCCACCAAAATTTTCTCATTCCCCAAAATCCAAATCTCTCCATTTCCCCTCTTCATTATCCTCCTCCAATCTCTCTCTTCGCCTCGTTCATCTCCGCCCACTTTCCGCAACCGCCGTGCCGGAAAAAGTTACAGAAATCGGAGATGTCATATCAAAATTAACGCTCGAAGAAGCTCGAATCCTCGTTGATTACCTCCAAGACAAGCTCGGCGTTTCCGCTGCCGCATTCGCCCCTGCCGCCGTCGCCGTCGCTTCCGGACCTGCCGGAGGAGACGATGCGGCCGCTGCCGTCGAGGAGAAGACGGAGTTCGATGTTGTTATAGAGGATGTGCCGAGTAATGCGAGGATTGCTGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCGAAGGAACTGATTGAAGGTTTGCCGAAGAAGTTTAAAGAAGGAATTTCGAAGGAAGAAGCAGAAGATGCGAAGAAACAGCTCGAAGAGGCTGGTGCGAAGATCGCTATCGTTTGA

mRNA sequence

ATGGCTTCCACTCTCTCCACCGCTTCTCTCCAATTCCCATCTTGTTCTTCATCTTCTTTTCCACCAAAATTTTCTCATTCCCCAAAATCCAAATCTCTCCATTTCCCCTCTTCATTATCCTCCTCCAATCTCTCTCTTCGCCTCGTTCATCTCCGCCCACTTTCCGCAACCGCCGTGCCGGAAAAAGTTACAGAAATCGGAGATGTCATATCAAAATTAACGCTCGAAGAAGCTCGAATCCTCGTTGATTACCTCCAAGACAAGCTCGGCGTTTCCGCTGCCGCATTCGCCCCTGCCGCCGTCGCCGTCGCTTCCGGACCTGCCGGAGGAGACGATGCGGCCGCTGCCGTCGAGGAGAAGACGGAGTTCGATGTTGTTATAGAGGATGTGCCGAGTAATGCGAGGATTGCTGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCGAAGGAACTGATTGAAGGTTTGCCGAAGAAGTTTAAAGAAGGAATTTCGAAGGAAGAAGCAGAAGATGCGAAGAAACAGCTCGAAGAGGCTGGTGCGAAGATCGCTATCGTTTGA

Coding sequence (CDS)

ATGGCTTCCACTCTCTCCACCGCTTCTCTCCAATTCCCATCTTGTTCTTCATCTTCTTTTCCACCAAAATTTTCTCATTCCCCAAAATCCAAATCTCTCCATTTCCCCTCTTCATTATCCTCCTCCAATCTCTCTCTTCGCCTCGTTCATCTCCGCCCACTTTCCGCAACCGCCGTGCCGGAAAAAGTTACAGAAATCGGAGATGTCATATCAAAATTAACGCTCGAAGAAGCTCGAATCCTCGTTGATTACCTCCAAGACAAGCTCGGCGTTTCCGCTGCCGCATTCGCCCCTGCCGCCGTCGCCGTCGCTTCCGGACCTGCCGGAGGAGACGATGCGGCCGCTGCCGTCGAGGAGAAGACGGAGTTCGATGTTGTTATAGAGGATGTGCCGAGTAATGCGAGGATTGCTGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCGAAGGAACTGATTGAAGGTTTGCCGAAGAAGTTTAAAGAAGGAATTTCGAAGGAAGAAGCAGAAGATGCGAAGAAACAGCTCGAAGAGGCTGGTGCGAAGATCGCTATCGTTTGA

Protein sequence

MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAIV

Homology

[Close]

BLAST of Cp4.1LG04g05340 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.9e-49
Identity = 126/189 (66.67%), Postives = 147/189 (77.78%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLST +L+ PS S++S        PK K+L FP      +   R   LRPL+A   P
Sbjct: 1   MASTLSTITLRSPSPSTASSTHASIPFPK-KALEFPIRTPKLH-HRRATFLRPLAAVEAP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKV ++GD IS LTL +A+ LV+YLQDKLGV+AA+FAPAAVA A G A   +A A VEEK
Sbjct: 61  EKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA--EAPAVVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EEAGAKIAI 190
           EEAGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of Cp4.1LG04g05340 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.4e-48
Identity = 124/189 (65.61%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLST +L+ PS S+++        PK K+L FP        + R   LRPL+A   P
Sbjct: 1   MASTLSTITLRSPSPSTATSTHASIPFPK-KTLEFPIRTPKLQ-NRRATFLRPLAAVEAP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKV ++GD IS LTL +A+ LV+YLQDKLGV+AA+FAPAAV  A G A   +A A VEEK
Sbjct: 61  EKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA--EAPAVVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EEAGAKIAI 190
           EEAGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of Cp4.1LG04g05340 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 189.1 bits (479), Expect = 4.5e-47
Identity = 120/194 (61.86%), Postives = 147/194 (75.77%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPK-SKSLHFPSSLSSSNLSL---RLVHLRPLSA 60
           MA+T + A+L  PS +S    P  S  PK  + L FP   +++ +SL   R   LRP++A
Sbjct: 1   MAATTTMATLNLPSLTSH---PNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAA 60

Query: 61  TAVPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAA 120
              PEK+ ++G  +S LTLEEAR+LVD+LQDKLGVSAA+FAPAA   A  P    DAA A
Sbjct: 61  VEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAA--PGAPADAAPA 120

Query: 121 VEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 180
           VEEKTEFDV I++VPSNARI+VIKAVRALTSL LKEAKELIEGLPKK KEG+SK++AEDA
Sbjct: 121 VEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDA 180

Query: 181 KKQLEEAGAKIAIV 191
           KKQLE+AGAK++IV
Sbjct: 181 KKQLEDAGAKVSIV 189

[Close]

BLAST of Cp4.1LG04g05340 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.8e-47
Identity = 123/194 (63.40%), Postives = 149/194 (76.80%), Query Frame = 0


Query: 2   ASTLSTASLQFPSCSSSSFP--PKFSHSP-KSKSLHFPSSL---SSSNLSLRLVHLRPLS 61
           ++TLS A+    +  SSS+P     +H P ++ ++ FPS     SSS L+ R  HLRP++
Sbjct: 3   STTLSIAT----TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIA 62

Query: 62  ATAVPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAA 121
           A   PEK+ +IG  IS LTLEEARILVDYLQDK GVS  + APAA AVA+   GG  AAA
Sbjct: 63  AVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAA 122

Query: 122 AVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAED 181
            VEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+
Sbjct: 123 VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 182

Query: 182 AKKQLEEAGAKIAI 190
           AKK LEEAGAK++I
Sbjct: 183 AKKTLEEAGAKVSI 190

[Close]

BLAST of Cp4.1LG04g05340 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 2.9e-46
Identity = 125/191 (65.45%), Postives = 146/191 (76.44%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSK--SLHFPSSLSSSNLSLRLVHLRPLSATA 60
           MAST  T S+     SSS      +H   SK  ++ FP  LSSS+ S R ++LRP+SA  
Sbjct: 1   MAST--TLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVE 60

Query: 61  VPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVE 120
            PEK+ +IG  IS LTLEEARILVDYLQDK GVS  + APAA AVA+   GG  AAA VE
Sbjct: 61  APEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAAVVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           E+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK
Sbjct: 121 EQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKK 180

Query: 181 QLEEAGAKIAI 190
            LEEAGAK++I
Sbjct: 181 TLEEAGAKVSI 186

[Close]

BLAST of Cp4.1LG04g05340 vs. NCBI nr
Match: XP_023529834.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334 bits (857), Expect = 7.11e-115
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Cp4.1LG04g05340 vs. NCBI nr
Match: XP_022989170.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 331 bits (849), Expect = 1.18e-113
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASLQFPSCSSSSFP KFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Cp4.1LG04g05340 vs. NCBI nr
Match: KAG6588957.1 (50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323 bits (828), Expect = 1.87e-110
Identity = 185/190 (97.37%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASLQFPSCSSSSFP KFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAV VA G AGG+DAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Cp4.1LG04g05340 vs. NCBI nr
Match: KAG7022725.1 (50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323 bits (827), Expect = 2.66e-110
Identity = 184/190 (96.84%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASLQFPSCSSSSFP KFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKVTEIGDVISKLTLEEAR+LVDYLQDKLGVSAAAFAPAAV VA G AGG+DAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARVLVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Cp4.1LG04g05340 vs. NCBI nr
Match: XP_022928154.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 321 bits (822), Expect = 1.54e-109
Identity = 184/190 (96.84%), Postives = 185/190 (97.37%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTA LQFPSCSSSSFP KFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTAFLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAV VA G AGG+DAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Cp4.1LG04g05340 vs. ExPASy TrEMBL
Match: A0A6J1JLN3 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486322 PE=3 SV=1)

HSP 1 Score: 331 bits (849), Expect = 5.70e-114
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASLQFPSCSSSSFP KFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Cp4.1LG04g05340 vs. ExPASy TrEMBL
Match: A0A6J1EK20 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435060 PE=3 SV=1)

HSP 1 Score: 321 bits (822), Expect = 7.43e-110
Identity = 184/190 (96.84%), Postives = 185/190 (97.37%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTA LQFPSCSSSSFP KFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP
Sbjct: 1   MASTLSTAFLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAV VA G AGG+DAAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGEDAAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Cp4.1LG04g05340 vs. ExPASy TrEMBL
Match: A0A6J1DD25 (50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111019918 PE=3 SV=1)

HSP 1 Score: 284 bits (727), Expect = 2.28e-95
Identity = 169/191 (88.48%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           MASTLSTASL+ PSCSSSS+P  FS SP+  SLHFP S SS+NLS RLVHLRP+SA A P
Sbjct: 1   MASTLSTASLRSPSCSSSSYPSNFSQSPRPFSLHFPFSPSSNNLSHRLVHLRPVSAAAAP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGP-AGGDDAAAAVEE 120
           EKV EIGDVISKLTLEEARILVDYLQ+KLGVSAAAFAPAAVAVA G  AGGD AAAAVEE
Sbjct: 61  EKVVEIGDVISKLTLEEARILVDYLQEKLGVSAAAFAPAAVAVAPGAGAGGDVAAAAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 190
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Cp4.1LG04g05340 vs. ExPASy TrEMBL
Match: A0A6J1F403 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441912 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 1.81e-94
Identity = 163/190 (85.79%), Postives = 172/190 (90.53%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           M+S LSTASL+FPSCSSSS+P  FSHS +S S+ FP S SS+NLSLR VH RPLSA AVP
Sbjct: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKVTEIGDVISKLTLEEAR LVDYLQ+KLGVSAAAFAPAAV VA G A G D AAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIE+VPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Cp4.1LG04g05340 vs. ExPASy TrEMBL
Match: A0A6J1J1D9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481837 PE=3 SV=1)

HSP 1 Score: 281 bits (719), Expect = 3.65e-94
Identity = 163/190 (85.79%), Postives = 172/190 (90.53%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60
           M+S LSTASL+ PSCSSSS+P  FSHS +S S+ FP S SS+NLSLR VH RPLSA AVP
Sbjct: 1   MSSALSTASLRLPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVEEK 120
           EKVTEIGDVISKLTLEEAR LVDYLQ+KLGVSAAAFAPAAVAVA G A G D AAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAASGGDDAAAVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIE+VPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 190
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of Cp4.1LG04g05340 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 188.3 bits (477), Expect = 5.5e-48
Identity = 123/194 (63.40%), Postives = 149/194 (76.80%), Query Frame = 0


Query: 2   ASTLSTASLQFPSCSSSSFP--PKFSHSP-KSKSLHFPSSL---SSSNLSLRLVHLRPLS 61
           ++TLS A+    +  SSS+P     +H P ++ ++ FPS     SSS L+ R  HLRP++
Sbjct: 3   STTLSIAT----TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIA 62

Query: 62  ATAVPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAA 121
           A   PEK+ +IG  IS LTLEEARILVDYLQDK GVS  + APAA AVA+   GG  AAA
Sbjct: 63  AVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAA 122

Query: 122 AVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAED 181
            VEE+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+
Sbjct: 123 VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 182

Query: 182 AKKQLEEAGAKIAI 190
           AKK LEEAGAK++I
Sbjct: 183 AKKTLEEAGAKVSI 190

[Close]

BLAST of Cp4.1LG04g05340 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 186.4 bits (472), Expect = 2.1e-47
Identity = 125/191 (65.45%), Postives = 146/191 (76.44%), Query Frame = 0


Query: 1   MASTLSTASLQFPSCSSSSFPPKFSHSPKSK--SLHFPSSLSSSNLSLRLVHLRPLSATA 60
           MAST  T S+     SSS      +H   SK  ++ FP  LSSS+ S R ++LRP+SA  
Sbjct: 1   MAST--TLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVE 60

Query: 61  VPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVE 120
            PEK+ +IG  IS LTLEEARILVDYLQDK GVS  + APAA AVA+   GG  AAA VE
Sbjct: 61  APEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--AAAVVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 180
           E+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK
Sbjct: 121 EQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKK 180

Query: 181 QLEEAGAKIAI 190
            LEEAGAK++I
Sbjct: 181 TLEEAGAKVSI 186

[Close]

BLAST of Cp4.1LG04g05340 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 159.5 bits (402), Expect = 2.7e-39
Identity = 105/192 (54.69%), Postives = 130/192 (67.71%), Query Frame = 0


Query: 2   ASTLSTASLQFPSCSSSSFPPKFSHSPKSKSLHFPSSL---SSSNLSLRLVHLRPLSATA 61
           A+TLS A+    S  SS          +  S+ FP S    SSS LS R ++L P+SA  
Sbjct: 3   ATTLSIATTIRSSSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVK 62

Query: 62  VPEKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVE 121
            P+K+ +IG  IS LTLEE+RILVDY+QDK GVS    APAA A+   P     A A+VE
Sbjct: 63  TPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPP-PLDNGGATASVE 122

Query: 122 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 181
            +T FDVVI DVP   RIAVI A+RA+TSL+L E+KELIEG PKKFKEG++K+EAE+ K 
Sbjct: 123 RQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDKT 182

Query: 182 QLEEAGAKIAIV 191
           QLEEAGAK++IV
Sbjct: 183 QLEEAGAKVSIV 193

[Close]

BLAST of Cp4.1LG04g05340 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 79.0 bits (193), Expect = 4.7e-15
Identity = 62/157 (39.49%), Postives = 91/157 (57.96%), Query Frame = 0


Query: 41  SSNLSLRLVHLRPLSATAV-PEKVTEIGDVISKLTLEEARILVDYLQDKLGVS----AAA 100
           SS++ L  +  R  S+ A   E V++I + +S LTL E   L + L+ KL +S     AA
Sbjct: 22  SSSVQLFTIQSRSYSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAA 81

Query: 101 FAPAAVAVASG---PAGGDDAAAAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKE 160
             P      SG    AGG+      E KT FDV+++   + ++I VIK VR +T+L LKE
Sbjct: 82  MMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKE 141

Query: 161 AKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAI 190
           AK+L+E  P   K+G+SKEEAE   ++L+  GAK+A+
Sbjct: 142 AKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 178

[Close]

BLAST of Cp4.1LG04g05340 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-10
Identity = 66/168 (39.29%), Postives = 90/168 (53.57%), Query Frame = 0


Query: 33  LHFPSSLSSSNLSLRLVHLRPLSATAVPE----KVTEIGDVISKLTLEEARILVDY---L 92
           LH  + LSS+         R L A A PE    K+  I D + KL   E   L DY    
Sbjct: 16  LHRTTPLSSAT--------RHLCAVASPEARTKKLERIADDLLKLNRIE---LYDYSLLF 75

Query: 93  QDKLGVSAAAFAPAAVAVASGPAGGDDAAAAVE----EKTEFDVVIEDVPSNARIAVIKA 152
             K+G++      +AVAV +G  G  DA+A+ E    EKT FDV +E   + ++I VIK 
Sbjct: 76  SHKIGLNRYG---SAVAV-TGSVG--DASASTETKTAEKTTFDVKLEKFEAASKIKVIKE 135

Query: 153 VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAI 190
           +RA T L LKEAK L+E  P   K G++KEEAE   ++L+  GA +A+
Sbjct: 136 IRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVAL 166

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g05340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24929	4.9e-49	66.67	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P36688	2.4e-48	65.61	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P02398	4.5e-47	61.86	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36210	7.8e-47	63.40	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36212	2.9e-46	65.45	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of Cp4.1LG04g05340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529834.1	7.11e-115	100.00	50S ribosomal protein L12, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989170.1	1.18e-113	99.47	50S ribosomal protein L12, chloroplastic-like [Cucurbita maxima]	[more]
KAG6588957.1	1.87e-110	97.37	50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
KAG7022725.1	2.66e-110	96.84	50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022928154.1	1.54e-109	96.84	50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG04g05340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JLN3	5.70e-114	99.47	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EK20	7.43e-110	96.84	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1DD25	2.28e-95	88.48	50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1F403	1.81e-94	85.79	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1J1D9	3.65e-94	85.79	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Cp4.1LG04g05340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27830.1	5.5e-48	63.40	ribosomal protein L12-A	[more]
AT3G27850.1	2.1e-47	65.45	ribosomal protein L12-C	[more]
AT3G27840.1	2.7e-39	54.69	ribosomal protein L12-B	[more]
AT4G36420.1	4.7e-15	39.49	Ribosomal protein L12 family protein	[more]
AT4G37660.1	7.8e-10	39.29	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 62..118 e-value: 3.7E-14 score: 54.5
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 62..125
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 62..110 e-value: 3.3E-13 score: 49.1
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 64..189 e-value: 1.6E-32 score: 110.5
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..189
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 58..190 score: 22.561241
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 61..189 e-value: 7.16273E-39 score: 127.657
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 123..189 e-value: 4.1E-24 score: 84.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 119..189 e-value: 9.0E-26 score: 91.8
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 118..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g05340.1	Cp4.1LG04g05340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome