Cp4.1LG04g05210 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g05210
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRetrotran_gag_3 domain-containing protein
LocationCp4.1LG04: 6126587 .. 6128795 (+)
RNA-Seq ExpressionCp4.1LG04g05210
SyntenyCp4.1LG04g05210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTTCTTCTTATGTCATATGGATTCCTCGAATAGTTCATCCTCTTCTTCGACCGAGACGAACTTGCTTTCACCGATTGTTCTGTTGTCGAACATCTGCAACCTGATATCGATAAAGCTCGACTCGACGAATTATGTCCTTTGGAAGTTTCAGTTGACAACACTTTTGAAAGCTCATAAACTTTTTGGCTTTATTGATGGTACTCAACCATGTCCGATATCGAATCCTTCGTACGACGATTGGTTTGCTAAGGATCAAGCTCTTATGACAGTCATAAATGCTACACTTTCACCTGAGGCTTTGGCATATGTGGTTGGTAGCACTACTTCTAAACAGGTTTGGAATGTTCTTGCAAAGCTGTATTCTTCTAGTTCAAGGTCTAATGTAGTGAATTTGAAGTCTGATCTACAAACTATTTCCAAGAAGTCTGATGAATCTATTGATGCCTATATTAAACGGATTAAGGAGATCAAGGACAAGCTTGCTAATGTTTCTACTGTTGTCAATGATGAGGATCTTCTTATCTATGCTCTAAATGGCCTTCCAACCGAGTATAATACTTTTCGAACGTCGATGCGTACGCGTTCTACGCCTGTTACTTTTGAAGAACTTCATGTTCTTCTAAAAGCTGAGGAATCAGCTCTTGCAAAACAGTCTAAGCGTGATGATTTGTGTAAACAACCAACTGCTTTACTTGCTTCTTCTCAATCTCTTATGTCTTATGCTTCTACTTTTAATAATAACTTTGTTCGAGGTCGTGGACATGGACATGGACATGGACGTTCTTCTTTTGATACTCAAGGTCGCGGTGGTGGTTCTTCCCAACAGCAGCAGTTGGTTGTTGCTAATAATCATTCATCTTGTCAGATTTGTTTACGTCGTGGCCATATTGCGCTCGATTGTTTCAATCGTATGAACTATAATTTTCATGGACGCCACCCTCCACATCACCTTGCTGCAATGGTTGCATCCCAGAATAATGCTTTTCTGTCTATTGTTAATTCTGATATGAATTATCTTTCTCTTGCATCTGGATATCATGGTGAAGAACAAGTTGGCGTTGGTAGTGGACAGTCTCTGCCTATTTCTCACTCAGGTTGTGGTACTTTTGAAACTCATCCTCCTTATCCTCCTTCTCCTACTCGAGTCGTGATTCCTAACATGGTATTATAGCTATGCCCTTAACTTAGCCATGTCAATAGAATCCTTAAATGTCGAACAAAGAAGTTGTGAGCCTTGAAGGTGTAGTGAAAAGTGACTCAAGTGTCGAACAAAGAGTGTACTTTGTTTGAGAACTCCAGAGAAGAAGTCGAGTCGAGTCTCGATTAAGGGGAAGCTGTTTGAGGGCTCCACCATAGGCCTCAGGGGAGACTCTATAGTGTACTTTGTTCGAGGGGAAGACTCTTGAGGATTGTTGGGATGGAGTCCCACGTTGGCTAATTTAGGGAATGATCATGAGTTTATAAGTAAGGAATACATGTTCATTGGTATGTGGCCTTCTGGGGAACCTCAAAGTAGAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCAATGTAGAGAGTCGTGATTCCTAACATGGTATCAGAGTCATGCCCTTAACTTAGTCATGTCAATAGAATTCTCAAATGTCGAACAAAGAAGTTGTGAGCCTCGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAAAAAAGGGTGTACTTTGTTCGAGGACTCCAGAGAAGGAGTTGAACCTCGATTAAGGGGAGGCCTTTCAGGGAAGCCCAAAGTAAAGCCATGAGAGCTTATGCGCAAAGTGGACAGTATCATAGAATTGTGGAGAGTCGTGATTCCTAACATCCTCCTTGTCCTCTTCTTCGTTGTGTTCCTAATATTATCGTTAATCTCAATTGTCTTATCAATATTCATTTTGATCCATTTTCATTTCAGGACAAGTAATGGAGCAAAATGTTGTTCCAAAGAACTAGCACCAATGGTCTATACCTGACTTCAAAAGCTATCCTACTACTACTAATGTTGATACCAAGTGTTATTTCATTCATATTTGTTGTTCATTAAGTTTGTTCTTTTCCTGTTGAATCTTCATGTTCTTCAAATAATTGAGTATGAGAATATTGTCTACGATCAAAGACGGTTTCTTTGCACTTTTTAGAACATCGAACAAAAGAACTAAGGTGAGTGGAAATGTAACAGTCCAAGCTCACC

mRNA sequence

TGTTTCTTCTTATGTCATATGGATTCCTCGAATAGTTCATCCTCTTCTTCGACCGAGACGAACTTGCTTTCACCGATTGTTCTGTTGTCGAACATCTGCAACCTGATATCGATAAAGCTCGACTCGACGAATTATGTCCTTTGGAAGTTTCAGTTGACAACACTTTTGAAAGCTCATAAACTTTTTGGCTTTATTGATGGACAAGTAATGGAGCAAAATGTTGTTCCAAAGAACTAGCACCAATGGTCTATACCTGACTTCAAAAGCTATCCTACTACTACTAATGTTGATACCAAGTGTTATTTCATTCATATTTGTTGTTCATTAAGTTTGTTCTTTTCCTGTTGAATCTTCATGTTCTTCAAATAATTGAGTATGAGAATATTGTCTACGATCAAAGACGGTTTCTTTGCACTTTTTAGAACATCGAACAAAAGAACTAAGGTGAGTGGAAATGTAACAGTCCAAGCTCACC

Coding sequence (CDS)

TGTTTCTTCTTATGTCATATGGATTCCTCGAATAGTTCATCCTCTTCTTCGACCGAGACGAACTTGCTTTCACCGATTGTTCTGTTGTCGAACATCTGCAACCTGATATCGATAAAGCTCGACTCGACGAATTATGTCCTTTGGAAGTTTCAGTTGACAACACTTTTGAAAGCTCATAAACTTTTTGGCTTTATTGATGGACAAGTAATGGAGCAAAATGTTGTTCCAAAGAACTAG

Protein sequence

CFFLCHMDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGQVMEQNVVPKN
Homology
[Close]
BLAST of Cp4.1LG04g05210 vs. NCBI nr
Match: KAG7015254.1 (hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117 bits (292), Expect = 3.10e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 7  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 66
          MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID
Sbjct: 1  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 60

[Close]
BLAST of Cp4.1LG04g05210 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117 bits (292), Expect = 3.14e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 7  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 66
          MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID
Sbjct: 1  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 60

[Close]
BLAST of Cp4.1LG04g05210 vs. NCBI nr
Match: XP_011658579.1 (uncharacterized protein LOC105436058 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 6.53e-19
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 7  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 66
          M SS +  SSS E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKLFGF+D
Sbjct: 1  MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVD 60

[Close]
BLAST of Cp4.1LG04g05210 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 7.04e-19
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 7  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 66
          M SS +  SSS E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKLFGF+D
Sbjct: 1  MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVD 60

[Close]
BLAST of Cp4.1LG04g05210 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.26e-18
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 7  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 66
          M SS +  SSS E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1  MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

[Close]
BLAST of Cp4.1LG04g05210 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.12e-19
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 7  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 66
          M SS +  SSS E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1  MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

[Close]
BLAST of Cp4.1LG04g05210 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.72e-19
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 7  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 66
          M SS +  SSS E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1  MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

[Close]
BLAST of Cp4.1LG04g05210 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.11e-19
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 7  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 66
          M SS +  SSS E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1  MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

[Close]
BLAST of Cp4.1LG04g05210 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.45e-19
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 7  MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 66
          M SS +  SSS E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1  MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

[Close]
BLAST of Cp4.1LG04g05210 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.94e-18
Identity = 42/57 (73.68%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 13 SSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGQV 69
          SSS++T+ +L SPI LLSNICNL+SI+LDST+++LWKFQLT +LKAHKLFGFIDG V
Sbjct: 24 SSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSV 80

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g05210 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g05210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015254.13.10e-29100.00hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6588985.13.14e-29100.00Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyr... [more]
XP_011658579.16.53e-1973.77uncharacterized protein LOC105436058 [Cucumis sativus][more]
KAE8645659.17.04e-1973.77hypothetical protein Csa_020439 [Cucumis sativus][more]
XP_008448008.11.26e-1873.77PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo][more]
BLAST of Cp4.1LG04g05210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BIR36.12e-1973.77uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BI586.72e-1973.77uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4DWT97.11e-1973.77uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5D3CLI68.45e-1973.77T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=... [more]
A0A6J1D9L61.94e-1873.68uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
BLAST of Cp4.1LG04g05210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 34..70
e-value: 2.5E-10
score: 39.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g05210.1Cp4.1LG04g05210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding