Cp4.1LG04g04510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g04510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	Cp4.1LG04: 6554815 .. 6558063 (-)
RNA-Seq Expression	Cp4.1LG04g04510
Synteny	Cp4.1LG04g04510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCGTCGTCCGTTCGTCCTTGACGGTGCGTCCGTGCCTCTTGTTACGAAATACCCCGGCGTTGGTTAGCTCCTACCTAAGAACTCACAAAGGTCCGAAGCCTCGCGGCGTTATCGATTCCCCACCTCACTCTTTCTGCTCCTCTCTCACAGGTACAACAATCACTCAAAAGAAGTACGTCCTGTTACCAGACCTCGCCGGAAATCGCGAGATTTCCGGCGTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGAACGCGTATCGTCACAAAGAGTTCCGTTAAAAGAGGTGTGCATGAATGTGATGTTCATATTGAGAAATGTCTCATGCATTGTTTTGTTAATTGTATGTTGTGAATAAGCATCTTGAAGAATTTTAGTAATGTTTTCCTGTTTAGTTAGAAATTTGCAGGCATTATCAAAGTACCCTAAAATTCCAATCAATGGAGGCCATGGTGAAGAAGTATCAGCAAAGATTCAGAAAGTTCAAAGATGAAATGGATCGCTGGGACGAGCTTCAAGTTCGCTTGATTTCACAGTTCACGAACGCTTCCTCCATCATTGGGAGGTTGCAGGTCAGCCTCAATTCTCATTTTATTATGCTGATAAACAATTTTTGTTTTCAGTTTCAAAATTGGAATATTTGAAAAATTATTGTCAGGTGCTTCAAGACCCTAAGAATTATGGCAGTCTGTCTGGCATTGTAGATGCGCTATTGGCTAAGCAGATGGAATCGTTGCAACTCGTTTTCTCGTCTATTATAAAGACAATGTAAGTTCTTTTTTGTTTTTGTTTCAATTTTCAACTTGTACATAGCTCAACTCATTAAAACATATATCCTTGATCGAGATGTTAGAAGTTCATGTCGTTGAACAAGAAAATGACAATCATGAAATTTGTCCAAACAGTTCGACAAACGTTTTTGCTGTCTTGTTTACATCAGTGAAGAATCTGAATAATTTTCTCAGGGTAGAACTTGGGAATATTGTCCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAACTAATCAAAGGTGGTTCGAATCAGCCATCAACAAAACAACTGCAACAAAGAGTTGGATTAAAACCGAGTCTTGAAGATTGCTTGAACGGGTTAAGGCTTCTTTGTGACATGCATCGCTCTGAGTAAGAATTTTTCTGATCATGAAAGCAAGTTTTTTACTGGATGTGTATTTGGCTTCGTAATGAACTTGTTTCAATCTCTTTAGGTACCATCTTAAAGAATCTATGGTCTCATCACTTCCAGAACTTTTCTGGAAACCCAGGTAACTTTATCCCATTGCTTTTGATAGTTGCATATGAAACATCCTTTTTCTTGTAATGTGTCATATGAATTTATACATTATTAGATTCCTTCCTTTTATCATCTTATATTTGTTTTCTGCCTCCAAATTATGTTATTATTTATGGTCCATTTGTTTCCTTCTGAAAAAATGTGCATCTTGAATTGTTAGGAATCATAGTGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGGTTGATCAACCCAACATTCGGAAAGAGGAAGGTTAGTAGATGACTACTTTCGTTCGGCACGTCGTATTATGAACTTTAGTGATGAATGTGTAATCTGTAAGTTTAGAAGTATCAAATCTGTGAATGAAAGAGGCCATTTAGTGTATACATTTGTTGGTAAGAAATTTAGTTTCTATGAAAAAAAAAAAAAAAAATGGAAGAATGTAAGCATACAAAAAGAACCCACTAAAGGACTTCAATCCGAGAGAATTGTAACAACCCAAGCCTACCACTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGTGTCTACTAGGGAGAGATTTCCACACCCTTTTAAGGAATGATTCGTTCCTCTCTCTAACCGATATGGGATCTCACAATCTACCCCCCTTGGGACGACACACCTAATTAAGGCCGGTAATAGACACCAACAAGGATGAACTAAACCTAGCTACGCCCCAATCTTCCTCCCGCAATCCATCGACCTCCCTAAAGATTCTGATGTTCCTCTCAAGCCAAAGTTCTCACAATAAGTCAAAGGAACAAGCCACAAAGAAGCACTATCTTGAACTTGAATTAGCTGCCTGGTCCTGGCTTTCAAGTATTCACTTACCATTACAGAGGCAAATCCTGCCTTGCTGTTTACTTTAATGGCTTTTGTTTGATCTAAAATCTCTTCTTCCCTGACAAGTATATTAAATATCATGTTTAGGGTCATATAGTTGTCCAATGAAAATAATCAAGTCGAGGTGCATACAAACTGACCAAACGATCACAAATATATAAAAAAAAAAAAACAGTATATTAAACCTAATGTCTAAAAAATTTGTCAGTGGGGTAGAGCTAAAATTTTGTTGCCTTTGCATCCATTTGGTGCTTGGATTAAGTTATGATGTATATACTGTATTGATATGCTGCATTTTGCATATGCAAAATGGCTTGATTCTTGATCCTCTTTTGTTGTAGTTGAGTTTATCTTTGATACCATACTGGTTCCAGAAGCTAGCTAAAATGATGAGATAATCAAACAGTTCAAGAACATTTGATTGCATCTACATGCCTTCTTCCAAGGAAGAACTTGTATTCTTGCAATGGAAAGAAATTTTCAGGAAGAGGAAGCTTCAAGGATATTTACCTTGTGAGAGAGAATACAACACCAACAATATCAATTGAAAAGCAAAGTAGTGTCGGTATTCATCTCTATTCCCTCGGTAGTAGTGCATTTGACGTTTTGGCCGATTATATGATTTAATCAGTTGAGTTATGTTGAGGTTAAATTTATGTTTTACTAGTGAGATTTTTTTATAATCTAGTTTTATGAACACACAATTAGTTCAACAATATTCGTCGATGGTACATGACTACTACCACTGTGCCAAGCTTACTTTGACGTGTATTAAGATACGACATAGAGACGACTTATCTACCATTACCAACCGGTGTGGTATTGCTTCCCATCCTTCTTCACGATCGTAGGTAGTAGGGTAGCAGGTTAGAGGAAGGAGATGAAGTAAAAGAACAAAGATGTTTTTGCCTTTATAGACATATAAATGTGAAGCCTTTTGATATGAGTTTCTGAAATGCATTGGTAAGAATGAATATTGGTGCACTTGCACTCATCTCATGTATTTCGACCATTTTGATTATAATAAAACTTTTTGGTCATAATTTTCAGGGAATTCTTTCTTTTATGTT

mRNA sequence

CGTCGTCGTCCGTTCGTCCTTGACGGTGCGTCCGTGCCTCTTGTTACGAAATACCCCGGCGTTGGTTAGCTCCTACCTAAGAACTCACAAAGGTCCGAAGCCTCGCGGCGTTATCGATTCCCCACCTCACTCTTTCTGCTCCTCTCTCACAGTTAGAAATTTGCAGGCATTATCAAAGTACCCTAAAATTCCAATCAATGGAGGCCATGGTGAAGAAGTATCAGCAAAGATTCAGAAAGTTCAAAGATGAAATGGATCGCTGGGACGAGCTTCAAGTTCGCTTGATTTCACAGTTCACGAACGCTTCCTCCATCATTGGGAGGTTGCAGGTGCTTCAAGACCCTAAGAATTATGGCAGTCTGTCTGGCATTGTAGATGCGCTATTGGCTAAGCAGATGGAATCGTTGCAACTCGTTTTCTCGGTAGAACTTGGGAATATTGTCCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAACTAATCAAAGGTGGTTCGAATCAGCCATCAACAAAACAACTGCAACAAAGAGTTGGATTAAAACCGAGTCTTGAAGATTGCTTGAACGGGTTAAGGCTTCTTTGTGACATGCATCGCTCTGAGTACCATCTTAAAGAATCTATGGTCTCATCACTTCCAGAACTTTTCTGGAAACCCAGGAATCATAGTGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGGTTGATCAACCCAACATTCGGAAAGAGGAAGTTGAGTTTATCTTTGATACCATACTGGTTCCAGAAGCTAGCTAAAATGATGAGATAATCAAACAGTTCAAGAACATTTGATTGCATCTACATGCCTTCTTCCAAGGAAGAACTTGTATTCTTGCAATGGAAAGAAATTTTCAGGAAGAGGAAGCTTCAAGGATATTTACCTTGTGAGAGAGAATACAACACCAACAATATCAATTGAAAAGCAAAGTAGTGTCGGTATTCATCTCTATTCCCTCGGTAGTAGTGCATTTGACGTTTTGGCCGATTATATGATTTAATCAGTTGAGTTATGTTGAGGTTAAATTTATGTTTTACTAGTGAGATTTTTTTATAATCTAGTTTTATGAACACACAATTAGTTCAACAATATTCGTCGATGGTACATGACTACTACCACTGTGCCAAGCTTACTTTGACGTGTATTAAGATACGACATAGAGACGACTTATCTACCATTACCAACCGGTGTGGTATTGCTTCCCATCCTTCTTCACGATCGTAGGTAGTAGGGTAGCAGGTTAGAGGAAGGAGATGAAGTAAAAGAACAAAGATGTTTTTGCCTTTATAGACATATAAATGTGAAGCCTTTTGATATGAGTTTCTGAAATGCATTGGTAAGAATGAATATTGGTGCACTTGCACTCATCTCATGTATTTCGACCATTTTGATTATAATAAAACTTTTTGGTCATAATTTTCAGGGAATTCTTTCTTTTATGTT

Coding sequence (CDS)

ATGGAGGCCATGGTGAAGAAGTATCAGCAAAGATTCAGAAAGTTCAAAGATGAAATGGATCGCTGGGACGAGCTTCAAGTTCGCTTGATTTCACAGTTCACGAACGCTTCCTCCATCATTGGGAGGTTGCAGGTGCTTCAAGACCCTAAGAATTATGGCAGTCTGTCTGGCATTGTAGATGCGCTATTGGCTAAGCAGATGGAATCGTTGCAACTCGTTTTCTCGGTAGAACTTGGGAATATTGTCCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAACTAATCAAAGGTGGTTCGAATCAGCCATCAACAAAACAACTGCAACAAAGAGTTGGATTAAAACCGAGTCTTGAAGATTGCTTGAACGGGTTAAGGCTTCTTTGTGACATGCATCGCTCTGAGTACCATCTTAAAGAATCTATGGTCTCATCACTTCCAGAACTTTTCTGGAAACCCAGGAATCATAGTGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGGTTGATCAACCCAACATTCGGAAAGAGGAAGTTGAGTTTATCTTTGATACCATACTGGTTCCAGAAGCTAGCTAA

Protein sequence

MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSGIVDALLAKQMESLQLVFSVELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEAS

Homology

[Close]

BLAST of Cp4.1LG04g04510 vs. ExPASy Swiss-Prot
Match: Q6NPG7 (Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.5e-39
Identity = 94/199 (47.24%), Postives = 134/199 (67.34%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGS---LSG 60
           MEA+++K+QQ+FRK K+EM++W+ LQVR +S F NASSII RLQ +Q+  +YG+   L G
Sbjct: 1   MEAVIRKWQQKFRKGKEEMEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKG 60

Query: 61  IVDALLAKQMESLQLVF------SVELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120
           I DA++ +QM  L+ +         E    V + EK++RDG QL      + S +++++R
Sbjct: 61  IEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQL---REIESSKRRVEER 120

Query: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 180
           +G+KP + DCL GL +L DMH+SEYHLK S++S L  L  KP   S  DL++LQ L+VDQ
Sbjct: 121 IGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILKP---SPGDLNALQYLVVDQ 180

Query: 181 PNIRKEEVEFIFDTILVPE 191
           PNI K+EV+ IFD I   E
Sbjct: 181 PNIPKDEVQHIFDVIFAEE 193

[Close]

BLAST of Cp4.1LG04g04510 vs. NCBI nr
Match: XP_023529794.1 (uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529795.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529796.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369 bits (946), Expect = 2.77e-128
Identity = 192/198 (96.97%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSGIVD 60
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSGIVD
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSGIVD 60

Query: 61  ALLAKQMESLQLVFS------VELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGL 120
           ALLAKQMESLQLVFS      VELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGL
Sbjct: 61  ALLAKQMESLQLVFSSIIKTMVELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGL 120

Query: 121 KPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQPNI 180
           KPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQPNI
Sbjct: 121 KPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQPNI 180

Query: 181 RKEEVEFIFDTILVPEAS 192
           RKEEVEFIFDTILVPEAS
Sbjct: 181 RKEEVEFIFDTILVPEAS 198

[Close]

BLAST of Cp4.1LG04g04510 vs. NCBI nr
Match: XP_022928127.1 (uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata])

HSP 1 Score: 358 bits (918), Expect = 5.72e-124
Identity = 189/201 (94.03%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSG--- 60
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDP NYGSLSG   
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IVDALLAKQMESLQLVFSV------ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120
           IVDALLAKQMESLQLVFS       ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 180
           VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVS+LPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIRKEEVEFIFDTILVPEAS 192
           PNIRKEEVEFIFDTILVPEAS
Sbjct: 181 PNIRKEEVEFIFDTILVPEAS 201

[Close]

BLAST of Cp4.1LG04g04510 vs. NCBI nr
Match: XP_022989465.1 (uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima])

HSP 1 Score: 349 bits (895), Expect = 1.83e-120
Identity = 184/201 (91.54%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSG--- 60
           MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDP NYGSLSG   
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDHWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IVDALLAKQMESLQLVFSV------ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120
           IVDALLAKQMESLQLVFS       ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 180
           VGLKPSLEDCLNGLRLLCDMHRSEY+LKESMVS+LP+LFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYYLKESMVSALPQLFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIRKEEVEFIFDTILVPEAS 192
           PNIRKEEVEF+FD ILVPEAS
Sbjct: 181 PNIRKEEVEFMFDIILVPEAS 201

[Close]

BLAST of Cp4.1LG04g04510 vs. NCBI nr
Match: KAG7022770.1 (hypothetical protein SDJN02_16506, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344 bits (883), Expect = 2.68e-118
Identity = 181/195 (92.82%), Postives = 183/195 (93.85%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSG--- 60
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDP NYGSLSG   
Sbjct: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94

Query: 61  IVDALLAKQMESLQLVFSVELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPS 120
           IVDALLAKQMES       ELGN VRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPS
Sbjct: 95  IVDALLAKQMES------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPS 154

Query: 121 LEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQPNIRKE 180
           L+DCLNGLRLLCDMHRSEYHLKESMVS+LPELFWKPRNHSAQDLSSLQQLLVDQPNIRKE
Sbjct: 155 LDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKE 214

Query: 181 EVEFIFDTILVPEAS 192
           EVEFIFDTILVPEAS
Sbjct: 215 EVEFIFDTILVPEAS 223

[Close]

BLAST of Cp4.1LG04g04510 vs. NCBI nr
Match: XP_022928126.1 (uncharacterized protein At5g43822 isoform X2 [Cucurbita moschata])

HSP 1 Score: 331 bits (848), Expect = 5.18e-113
Identity = 175/187 (93.58%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSG--- 60
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDP NYGSLSG   
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IVDALLAKQMESLQLVFSV------ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120
           IVDALLAKQMESLQLVFS       ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 178
           VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVS+LPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

[Close]

BLAST of Cp4.1LG04g04510 vs. ExPASy TrEMBL
Match: A0A6J1EJ12 (uncharacterized protein At5g43822 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 358 bits (918), Expect = 2.77e-124
Identity = 189/201 (94.03%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSG--- 60
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDP NYGSLSG   
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IVDALLAKQMESLQLVFSV------ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120
           IVDALLAKQMESLQLVFS       ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 180
           VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVS+LPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIRKEEVEFIFDTILVPEAS 192
           PNIRKEEVEFIFDTILVPEAS
Sbjct: 181 PNIRKEEVEFIFDTILVPEAS 201

[Close]

BLAST of Cp4.1LG04g04510 vs. ExPASy TrEMBL
Match: A0A6J1JMF9 (uncharacterized protein At5g43822 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486514 PE=4 SV=1)

HSP 1 Score: 349 bits (895), Expect = 8.87e-121
Identity = 184/201 (91.54%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSG--- 60
           MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDP NYGSLSG   
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDHWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IVDALLAKQMESLQLVFSV------ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120
           IVDALLAKQMESLQLVFS       ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 180
           VGLKPSLEDCLNGLRLLCDMHRSEY+LKESMVS+LP+LFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYYLKESMVSALPQLFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 181 PNIRKEEVEFIFDTILVPEAS 192
           PNIRKEEVEF+FD ILVPEAS
Sbjct: 181 PNIRKEEVEFMFDIILVPEAS 201

[Close]

BLAST of Cp4.1LG04g04510 vs. ExPASy TrEMBL
Match: A0A6J1EJF6 (uncharacterized protein At5g43822 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 331 bits (848), Expect = 2.51e-113
Identity = 175/187 (93.58%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSG--- 60
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDP NYGSLSG   
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IVDALLAKQMESLQLVFSV------ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120
           IVDALLAKQMESLQLVFS       ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 178
           VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVS+LPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

[Close]

BLAST of Cp4.1LG04g04510 vs. ExPASy TrEMBL
Match: A0A6J1EQT0 (uncharacterized protein At5g43822 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 331 bits (848), Expect = 3.68e-113
Identity = 175/187 (93.58%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSG--- 60
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDP NYGSLSG   
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IVDALLAKQMESLQLVFSV------ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120
           IVDALLAKQMESLQLVFS       ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 178
           VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVS+LPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

[Close]

BLAST of Cp4.1LG04g04510 vs. ExPASy TrEMBL
Match: A0A6J1JQC0 (uncharacterized protein At5g43822 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486514 PE=4 SV=1)

HSP 1 Score: 325 bits (834), Expect = 3.41e-111
Identity = 172/187 (91.98%), Postives = 175/187 (93.58%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLSG--- 60
           MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDP NYGSLSG   
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDHWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 61  IVDALLAKQMESLQLVFSV------ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120
           IVDALLAKQMESLQLVFS       ELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 178
           VGLKPSLEDCLNGLRLLCDMHRSEY+LKESMVS+LP+LFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYYLKESMVSALPQLFWKPRNHSAQDLSSLQQLLVDQ 180

[Close]

BLAST of Cp4.1LG04g04510 vs. TAIR 10
Match: AT5G43822.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-40
Identity = 94/199 (47.24%), Postives = 134/199 (67.34%), Query Frame = 0


Query: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGS---LSG 60
           MEA+++K+QQ+FRK K+EM++W+ LQVR +S F NASSII RLQ +Q+  +YG+   L G
Sbjct: 1   MEAVIRKWQQKFRKGKEEMEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKG 60

Query: 61  IVDALLAKQMESLQLVF------SVELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120
           I DA++ +QM  L+ +         E    V + EK++RDG QL      + S +++++R
Sbjct: 61  IEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQL---REIESSKRRVEER 120

Query: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 180
           +G+KP + DCL GL +L DMH+SEYHLK S++S L  L  KP   S  DL++LQ L+VDQ
Sbjct: 121 IGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILKP---SPGDLNALQYLVVDQ 180

Query: 181 PNIRKEEVEFIFDTILVPE 191
           PNI K+EV+ IFD I   E
Sbjct: 181 PNIPKDEVQHIFDVIFAEE 193

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g04510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPG7	3.5e-39	47.24	Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 P...	[more]

BLAST of Cp4.1LG04g04510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529794.1	2.77e-128	96.97	uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529795.1 u...	[more]
XP_022928127.1	5.72e-124	94.03	uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata]	[more]
XP_022989465.1	1.83e-120	91.54	uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima]	[more]
KAG7022770.1	2.68e-118	92.82	hypothetical protein SDJN02_16506, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022928126.1	5.18e-113	93.58	uncharacterized protein At5g43822 isoform X2 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG04g04510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJ12	2.77e-124	94.03	uncharacterized protein At5g43822 isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JMF9	8.87e-121	91.54	uncharacterized protein At5g43822 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1EJF6	2.51e-113	93.58	uncharacterized protein At5g43822 isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1EQT0	3.68e-113	93.58	uncharacterized protein At5g43822 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JQC0	3.41e-111	91.98	uncharacterized protein At5g43822 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Cp4.1LG04g04510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43822.1	2.5e-40	47.24	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25
None	No IPR available	PANTHER	PTHR37904:SF2	OS10G0566900 PROTEIN	coord: 1..190
IPR029159	Casein Kinase 2 substrate	PFAM	PF15011	CK2S	coord: 7..159 e-value: 5.9E-36 score: 123.8
IPR038985	At5g43822-like	PANTHER	PTHR37904	OS10G0566900 PROTEIN	coord: 1..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g04510.1	Cp4.1LG04g04510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005635	nuclear envelope