Cp4.1LG04g04260 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g04260
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RRP15-like protein
Location	Cp4.1LG04: 6707300 .. 6710179 (+)
RNA-Seq Expression	Cp4.1LG04g04260
Synteny	Cp4.1LG04g04260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCAAAACCAATTGGGCCATTTATTTCAAATTTCCCTTTCGTAAACCCTAATCACTCTGTTCTTCAGCATCTTCTTCCATTGTTCGTGTCGTGGCGGTTGATTTCTACAGAACTTTCTCTGATAGACTTGAAAATTTCGTTGTGCATTTGAATCAGAAACTATGGCCGAGGAAGGGGAATTGATGAGAGGTACGAAGAGGAGTAAAAAGATTGGTTCTAGGAACAAGAAAAGACCGAGGATGATGGGTGGAAGTGGAAACAAAGTTAAGATTGATAGGAAAATGCAGAAACTTTTTCGAAAACGAGCGCGTGAGTATAATTCAGATGATGAAGATGATGACACGAAGACTGCAGCGGCTCCAGCGGTTGGAGATGAGAGCAAAGTTTCAGAGCACAATCGCGAGGAGGTTGTAGATGAAGAGATTTCTGAGGGTGAAGAAGAGGAAGGGAACGATGTGAATTCGGATGCGGGGCTTTCCGAAGACGATGAGAGTGGTGTAATGCAACCGGGTATAACTAAGTTTATTGAAGGTTGTAGAGCATTCAGAGCTGCTTTCAGGAGTATTCTTAAGAAGAGCATATCTGATGAAACTCTGGTAGTTTATACATCTTACGTGTGTTGGAGTTGTTTTCAATAGTAGTAATGAAGAATTAATCCGCCATGTTTGTGTTGCAGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGCGGAAGGTCAAAGGAGAGGCCAAGAAGGAGAAACAATTGGTATTTCCTACTATGTTTGTGTATGGTTTAGCTTGCTTCAAATTGGCTGACTCTAAATGTTTGGATATTGTAGATGGCAGAAAAAGGGCATGTGAAGCCTGCTACTTACTTGGATTCTCATGAGAAGTTCCTTATTGGCGTTGCTACAAAAGGAGGTAGTGTATCGTTTTATCTTCTATAAAGATGGGTGTGGCTGTTGATTATAACATTTATTGTCATACTAACATAGTTATCTCTATGCATTGGTTCTTGTTGGATTGCCAGTCGTCAAGTTGTTTAATGCTGTAAGTAGCCAAATTTATATTTCAGCCAAGTTTTTGCTCTTCTATTTTGTATTCGTCGCTGAATTCCGTTATTATTAATATGATACAGGTCAACAAGGCACAACATGCCCAGAAGGGTTTGAATCCTTCCAGAGCTAAAGATGCTAAAGGTATTGTGCCTCCTATGTAACTTTGATCTCAGAAGTTAACAAAATAAAAAATTGTGTAGAACTAATATAATTTTCACACTTTCCTTCTTGCTTTGTGAAAATGGCATTTGCATTCGATTAATTTGGTTTGAATCTGTAGTTCACGTTACATTGTACTGAATCTTGTAGCTTAATTTTCGACGTTGTACGATGTATGTCTTATATTTTGTTTTGGGGTTTCTGCTTTATCCTTGATGAAAACCATTTTGTGTAGTCTGACAACATACCAAAGTTCTAATTAATGAGTCATAGTAACTTTACTATGTGATTGGAGTAACCAGTGATTTATAGGCACGTGCCTTGGATTTATCGCCCCGTTAGTTTCTCATGCTTGCTTTCAGTCAACTAATGCCTTCCCTTCCACTGTTGGCTTACGTAGTGTTATCTCGAGTTTAGCGTAACATTACTAGACCTATCATGGTTGCATACTTGCACGCTCATCCTTTCTTTCTTGACTTGTGATTATGTGAGGGGCTGTTGAAGACTGAGGGTGAAACCATGTGTAAAATACCTTTTCATACTATCTTGTCTCATTCTGAGTAATTTATTTGGTTTATACTGTCAGCTATAAGTAAGCGCAGGAAAGAAGCCTTCTTTTCTGAGTTGGGCAAGCCAACTTTGTCATCAACAAACCGTAATGCGAAGGTTAGTTATTTCTACTTTCTAGTCTTCCAATTTCCGCTGTAGAATTTGATAAAGAATTTGATAAATTTATCAACTTTTAACAACGTGTTCGTAAATTCTTGTCTCAATCGCTTACAAGGGATGTTACTCTTTACGAACACCCGAGTCTCTGTACTCGAGGCAAAGCATATGCGTGGCCTGTTTAATTACCATCATCACCGTTGTTTTTGTTTACAGTGGAATGGGGAAGGGAGGTGTATGATGGTTAAGGGAGTGAAACTCGCATTGTCATCGTGTATTATCTGTTTCTTCGTGTTCATAATGAATTAAAATGACCACCTCTATGTTGAACAGGGGAACACATCAGGTGATGCAGCGGAAGCTGAAGGGCCTGCCTGGGCTCCGTTACGTGATAATTATATGCTGACCAATTCCAAGCTAAAAGATTGGGATAAGATGCCAGTAAGATATACTTCCAAATACTAACGTCGGTTGCGCCTCTTATTCTTGGTTCCGATTTTCATATCAGTGTGATCAACTATACTTGCAGGATAATATGACTAAAGCTGAGGACAACGGGAGAATGTTGGGTGACAGTAGTTCAGACGACGATGATTGATTGGTTTCATAAATCTTATAGTTTTCAGTTAGCCGATCGTTCACAAAGCTGGGTTCGATTTTGGCTTCGTAGTGTTGATACAAAAAGATGGCCTAAGCGTTTTTGGTCACGTGTTGGTGAACTCACCTTGGATGCCTCAGCTATATCTTGTTATTGAGCCCACAAAAAATTCCCTCTATATATTTGTCCAATTTTTGTTCTGATCTCCAGTGAGATTCAAGTGTAAAAGGTCACCCATTTGCTCTGAGTTTATATGATTTTTGAGCAAAGTGGTTGAAGATGAAAATTTTGGTCTCAATTTGTATGGATTGCACAAGTAGTTAAGAGAGAAATGTATTGGTGCTAATTTACTTATTGAAATTTATTAAATCTACTAACGCTCT

mRNA sequence

ATGGGCCAAAACCAATTGGGCCATTTATTTCAAATTTCCCTTTCGTAAACCCTAATCACTCTGTTCTTCAGCATCTTCTTCCATTGTTCGTGTCGTGGCGGTTGATTTCTACAGAACTTTCTCTGATAGACTTGAAAATTTCGTTGTGCATTTGAATCAGAAACTATGGCCGAGGAAGGGGAATTGATGAGAGGTACGAAGAGGAGTAAAAAGATTGGTTCTAGGAACAAGAAAAGACCGAGGATGATGGGTGGAAGTGGAAACAAAGTTAAGATTGATAGGAAAATGCAGAAACTTTTTCGAAAACGAGCGCGTGAGTATAATTCAGATGATGAAGATGATGACACGAAGACTGCAGCGGCTCCAGCGGTTGGAGATGAGAGCAAAGTTTCAGAGCACAATCGCGAGGAGGTTGTAGATGAAGAGATTTCTGAGGGTGAAGAAGAGGAAGGGAACGATGTGAATTCGGATGCGGGGCTTTCCGAAGACGATGAGAGTGGTGTAATGCAACCGGGTATAACTAAGTTTATTGAAGGTTGTAGAGCATTCAGAGCTGCTTTCAGGAGTATTCTTAAGAAGAGCATATCTGATGAAACTCTGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGCGGAAGGTCAAAGGAGAGGCCAAGAAGGAGAAACAATTGATGGCAGAAAAAGGGCATGTGAAGCCTGCTACTTACTTGGATTCTCATGAGAAGTTCCTTATTGGCGTTGCTACAAAAGGAGTCGTCAAGTTGTTTAATGCTGTCAACAAGGCACAACATGCCCAGAAGGGTTTGAATCCTTCCAGAGCTAAAGATGCTAAAGCTATAAGTAAGCGCAGGAAAGAAGCCTTCTTTTCTGAGTTGGGCAAGCCAACTTTGTCATCAACAAACCGTAATGCGAAGGGGAACACATCAGGTGATGCAGCGGAAGCTGAAGGGCCTGCCTGGGCTCCGTTACGTGATAATTATATGCTGACCAATTCCAAGCTAAAAGATTGGGATAAGATGCCAGATAATATGACTAAAGCTGAGGACAACGGGAGAATGTTGGGTGACAGTAGTTCAGACGACGATGATTGATTGGTTTCATAAATCTTATAGTTTTCAGTTAGCCGATCGTTCACAAAGCTGGGTTCGATTTTGGCTTCGTAGTGTTGATACAAAAAGATGGCCTAAGCGTTTTTGGTCACGTGTTGGTGAACTCACCTTGGATGCCTCAGCTATATCTTGTTATTGAGCCCACAAAAAATTCCCTCTATATATTTGTCCAATTTTTGTTCTGATCTCCAGTGAGATTCAAGTGTAAAAGGTCACCCATTTGCTCTGAGTTTATATGATTTTTGAGCAAAGTGGTTGAAGATGAAAATTTTGGTCTCAATTTGTATGGATTGCACAAGTAGTTAAGAGAGAAATGTATTGGTGCTAATTTACTTATTGAAATTTATTAAATCTACTAACGCTCT

Coding sequence (CDS)

ATGGCCGAGGAAGGGGAATTGATGAGAGGTACGAAGAGGAGTAAAAAGATTGGTTCTAGGAACAAGAAAAGACCGAGGATGATGGGTGGAAGTGGAAACAAAGTTAAGATTGATAGGAAAATGCAGAAACTTTTTCGAAAACGAGCGCGTGAGTATAATTCAGATGATGAAGATGATGACACGAAGACTGCAGCGGCTCCAGCGGTTGGAGATGAGAGCAAAGTTTCAGAGCACAATCGCGAGGAGGTTGTAGATGAAGAGATTTCTGAGGGTGAAGAAGAGGAAGGGAACGATGTGAATTCGGATGCGGGGCTTTCCGAAGACGATGAGAGTGGTGTAATGCAACCGGGTATAACTAAGTTTATTGAAGGTTGTAGAGCATTCAGAGCTGCTTTCAGGAGTATTCTTAAGAAGAGCATATCTGATGAAACTCTGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGCGGAAGGTCAAAGGAGAGGCCAAGAAGGAGAAACAATTGATGGCAGAAAAAGGGCATGTGAAGCCTGCTACTTACTTGGATTCTCATGAGAAGTTCCTTATTGGCGTTGCTACAAAAGGAGTCGTCAAGTTGTTTAATGCTGTCAACAAGGCACAACATGCCCAGAAGGGTTTGAATCCTTCCAGAGCTAAAGATGCTAAAGCTATAAGTAAGCGCAGGAAAGAAGCCTTCTTTTCTGAGTTGGGCAAGCCAACTTTGTCATCAACAAACCGTAATGCGAAGGGGAACACATCAGGTGATGCAGCGGAAGCTGAAGGGCCTGCCTGGGCTCCGTTACGTGATAATTATATGCTGACCAATTCCAAGCTAAAAGATTGGGATAAGATGCCAGATAATATGACTAAAGCTGAGGACAACGGGAGAATGTTGGGTGACAGTAGTTCAGACGACGATGATTGA

Protein sequence

MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDDTKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITKFIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLMAEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRKEAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMTKAEDNGRMLGDSSSDDDD

Homology

[Close]

BLAST of Cp4.1LG04g04260 vs. ExPASy Swiss-Prot
Match: Q3T062 (RRP15-like protein OS=Bos taurus OX=9913 GN=RRP15 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-09
Identity = 93/301 (30.90%), Postives = 133/301 (44.19%), Query Frame = 0


Query: 31  SGNKVKID---RKMQKLFRKRAREYNSDDEDDDTKTAAAPAVGDESKVSEHNREEVVDEE 90
           +G K+KI    ++M+ +    A E    D+D      +  + G E             + 
Sbjct: 12  AGKKLKISLRKKRMKMVVASVASELEDKDKDASDNEGSLGSCGLEK------------DH 71

Query: 91  ISEGEEEEGNDVNSDAGLSEDDESGVMQPGITKFIEGCRA-FRAAFRSILKKSISDETLG 150
            S G+E    D   +A   EDD     +        G  A +  A   IL K I  E+  
Sbjct: 72  FSSGDEAVEADNEDEAEPREDDNDSAAEA-----TAGANAGWADAMARILSKKI-PESKP 131

Query: 151 PILSANKKL--VAEKLAEEEAERKVKGEAKKEKQLMAEKGHVKPATYLDSH-EKFLIGVA 210
            IL  NK+L    EKL +E  E++ + + K+E ++M     VKP    D   E+ L  +A
Sbjct: 132 TILVRNKELEKEKEKLKQERLEKRKQLDKKREWEMMC---RVKPDVVKDKETERNLQRIA 191

Query: 211 TKGVVKLFNAVNKAQ----HAQKGLNPSRAKDAKAISKRRKEAFFSELGKPTLSSTNRNA 270
           T+GVV+LFNAV K Q       K    S  K AK IS   K+ F S L     S++ +N+
Sbjct: 192 TRGVVQLFNAVQKHQKNVDEKVKEAGGSIRKRAKLISSVSKKDFISVLRGMDGSASEKNS 251

Query: 271 KGNTS----GDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMTKAEDNGRMLGDSSSD 317
            G  S     +A   EGP W  LRD++M+  + +KDWDK  D       +G  LG  S  
Sbjct: 252 AGKNSKAKQTEAKSEEGPGWTILRDDFMM-GASMKDWDKESDG-----PDGSRLGCGSDS 285

[Close]

BLAST of Cp4.1LG04g04260 vs. ExPASy Swiss-Prot
Match: Q9CYX7 (RRP15-like protein OS=Mus musculus OX=10090 GN=Rrp15 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-07
Identity = 70/231 (30.30%), Postives = 106/231 (45.89%), Query Frame = 0


Query: 81  EEVVDEEISEGEEEEGNDVNSDAGLSEDDESGV--MQPGITKFIEGCRAFRAAFRSILKK 140
           +EV D    EG  +   D + D     D E  V   +       E      + +   + K
Sbjct: 39  DEVKDSSDGEGSCDSEMDHSDDGAAEADSEDNVESCEEDNEDAAESSAGTNSGWADAMAK 98

Query: 141 SISDET---LGPILSANKKL--VAEKLAEEEAERKVKGEAKKEKQLMAEKGHVKPATYLD 200
            ++ +T      IL+ NK+L    EKL +E  E++ + + K+E +++     VKP    D
Sbjct: 99  ILNKKTPKSKATILTKNKELEKEKEKLKQERLEKRKQLDKKREWEMLC---RVKPDVVKD 158

Query: 201 SH-EKFLIGVATKGVVKLFNAVNKAQ----HAQKGLNPSRAKDAKAISKRRKEAFFSELG 260
              E+ L  +AT+GVV+LFNAV K Q       K    S  K AK +S   K+ F S L 
Sbjct: 159 KEAERNLQRIATRGVVQLFNAVQKHQRNVGEKVKEAGGSVRKRAKLMSTVSKKDFISVL- 218

Query: 261 KPTLSSTNRNAKGNTSGDAAEA-----EGPAWAPLRDNYMLTNSKLKDWDK 295
              +  T+RN+    S  A +      E P W  LRD++M+  + +KDWDK
Sbjct: 219 -RGMDGTSRNSPAGKSPKARQTEVKSEESPGWKILRDDFMM-GASMKDWDK 263

[Close]

BLAST of Cp4.1LG04g04260 vs. ExPASy Swiss-Prot
Match: Q5M947 (RRP15-like protein OS=Rattus norvegicus OX=10116 GN=Rrp15 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-05
Identity = 81/283 (28.62%), Postives = 131/283 (46.29%), Query Frame = 0


Query: 32  GNKVKIDRKMQKLFRKRAREYNSDDEDDDTKTAAAPAVGDESKVSEHNREEVVDEEISEG 91
           G K+K   K +K  +K A+   S  ED+            +S   E + E  +D+   +G
Sbjct: 13  GGKLKRSPKKKKKMKKVAKAAVSKLEDE----------LKDSSGGEGSCESEMDDS-DDG 72

Query: 92  EEEEGNDVNSDAGLSEDDESGVMQPGITKFIEGCRAFRAAFRSILKKSISDETLGPILSA 151
             E  ++ N ++   E++ +     G          +  A   IL K  + ++   IL+ 
Sbjct: 73  AAEADSEDNVESCEEENEVAAESSAGTNS------GWADAMAKILNKK-TPKSKPTILTK 132

Query: 152 NKKL--VAEKLAEEEAERKVKGEAKKEKQLMAEKGHVKPATYLDSH-EKFLIGVATKGVV 211
           NK+L    EKL +E  E++ + + K+E +++     VKP    D   E+ L  +AT+GVV
Sbjct: 133 NKELEKEKEKLKQERLEKRKQIDKKREWEMLC---RVKPDVIKDKEAERNLQRIATRGVV 192

Query: 212 KLFNAVNKAQ----HAQKGLNPSRAKDAKAISKRRKEAFFSEL----GKPTLSSTNRNAK 271
           +LFNAV K Q       K +  S  K AK +S   K+ F S L    G    SS  ++ K
Sbjct: 193 QLFNAVQKHQRNVDEKVKEVGGSIRKRAKLMSTVSKKDFISVLRGMDGASENSSAGKSPK 252

Query: 272 GNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMTKAE 304
              + +    EGP W  LRD++M+  + +KDWDK  +    A+
Sbjct: 253 ARQT-EVKSEEGPGWKILRDDFMM-GASMKDWDKESEGEEPAD 272

[Close]

BLAST of Cp4.1LG04g04260 vs. ExPASy Swiss-Prot
Match: Q9Y3B9 (RRP15-like protein OS=Homo sapiens OX=9606 GN=RRP15 PE=1 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 5.5e-05
Identity = 80/272 (29.41%), Postives = 123/272 (45.22%), Query Frame = 0


Query: 57  EDDDTKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQP 116
           ED+ T T+ +       K   ++ ++ ++ + SEG+ E  +  N + G S          
Sbjct: 36  EDEATDTSDSEGSCGSEKDHFYSDDDAIEAD-SEGDAEPCDKENENDGESS--------- 95

Query: 117 GITKFIEGCRAFRAAFRSILKKSISDETLGPILSANKKL--VAEKLAEEEAERKVKGEAK 176
                +     +  A   +L K  + E+   IL  NKKL    EKL +E  E+  + + +
Sbjct: 96  -----VGTNMGWADAMAKVLNKK-TPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKR 155

Query: 177 KEKQLMAEKGHVKPATYLDSH-EKFLIGVATKGVVKLFNAVNKAQ----HAQKGLNPSRA 236
            E ++M     VKP    D   E+ L  +AT+GVV+LFNAV K Q       K    S  
Sbjct: 156 LEWEMMC---RVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMR 215

Query: 237 KDAKAISKRRKEAFFSEL----GKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLT 296
           K AK IS   K+ F S L    G    ++++R        +    EGP W  LRD++M+ 
Sbjct: 216 KRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTILRDDFMM- 275

Query: 297 NSKLKDWDKMPDNMTKAEDNGRMLGDSSSDDD 318
            + +KDWDK  D      D+ R   +S+SD D
Sbjct: 276 GASMKDWDKESD----GPDDSR--PESASDSD 281

[Close]

BLAST of Cp4.1LG04g04260 vs. NCBI nr
Match: XP_023529755.1 (RRP15-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 592 bits (1527), Expect = 9.78e-213
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           TKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLM 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLM
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLM 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240

Query: 241 EAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMT 300
           EAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMT
Sbjct: 241 EAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMT 300

Query: 301 KAEDNGRMLGDSSSDDDD 318
           KAEDNGRMLGDSSSDDDD
Sbjct: 301 KAEDNGRMLGDSSSDDDD 318

[Close]

BLAST of Cp4.1LG04g04260 vs. NCBI nr
Match: XP_022928388.1 (RRP15-like protein [Cucurbita moschata])

HSP 1 Score: 580 bits (1494), Expect = 1.05e-207
Identity = 311/318 (97.80%), Postives = 313/318 (98.43%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           T TAAAPAVGDESKVSEHNREEV DEE SEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAAAPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLM 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQL+
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240

Query: 241 EAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMT 300
           EAFFSELGKPTLS+TN NAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDN T
Sbjct: 241 EAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNTT 300

Query: 301 KAEDNGRMLGDSSSDDDD 318
           KAEDNGRMLGDSSSDDDD
Sbjct: 301 KAEDNGRMLGDSSSDDDD 318

[Close]

BLAST of Cp4.1LG04g04260 vs. NCBI nr
Match: KAG6589088.1 (RRP15-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 578 bits (1491), Expect = 3.00e-207
Identity = 310/318 (97.48%), Postives = 313/318 (98.43%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           T TAA+PAVGDESKVSEHNREEV DEE SEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLM 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQL+
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240

Query: 241 EAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMT 300
           EAFFSELGKPTLS+TN NAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDN T
Sbjct: 241 EAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNTT 300

Query: 301 KAEDNGRMLGDSSSDDDD 318
           KAEDNGRMLGDSSSDDDD
Sbjct: 301 KAEDNGRMLGDSSSDDDD 318

[Close]

BLAST of Cp4.1LG04g04260 vs. NCBI nr
Match: XP_022989440.1 (RRP15-like protein [Cucurbita maxima])

HSP 1 Score: 575 bits (1481), Expect = 1.00e-205
Identity = 309/318 (97.17%), Postives = 311/318 (97.80%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           T TAAAPAVGDESKVSEHNREEV DEE SEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAAAPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLM 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSAN+KLVAEKLAEEEAERKV GEAKKEKQLM
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANRKLVAEKLAEEEAERKVTGEAKKEKQLM 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240

Query: 241 EAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMT 300
           EAFFSELGKPTLS+TN NAKGNTSGDAAEAE PAWAPLRDNYMLTNSKLKDWDKMPDN T
Sbjct: 241 EAFFSELGKPTLSATNNNAKGNTSGDAAEAEEPAWAPLRDNYMLTNSKLKDWDKMPDNTT 300

Query: 301 KAEDNGRMLGDSSSDDDD 318
           KAEDNGRMLGDSSSDDDD
Sbjct: 301 KAEDNGRMLGDSSSDDDD 318

[Close]

BLAST of Cp4.1LG04g04260 vs. NCBI nr
Match: KAG7022795.1 (RRP15-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 568 bits (1464), Expect = 6.30e-203
Identity = 309/331 (93.35%), Postives = 313/331 (94.56%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           T TAA+PAVGDESKVSEHNREEV DEE SEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLM 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQL+
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK------- 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK       
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPIL 240

Query: 241 ------AISKRRKEAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300
                 +ISKRRKEAFFSELGKPTLS+TN NAKGNTSGDAAEAEGPAWAPLRDNYMLTNS
Sbjct: 241 IFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300

Query: 301 KLKDWDKMPDNMTKAEDNGRMLGDSSSDDDD 318
           KLKDWDKMPDN TKAEDNGRMLGDSSSDDDD
Sbjct: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 331

[Close]

BLAST of Cp4.1LG04g04260 vs. ExPASy TrEMBL
Match: A0A6J1ENV8 (RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435218 PE=3 SV=1)

HSP 1 Score: 580 bits (1494), Expect = 5.07e-208
Identity = 311/318 (97.80%), Postives = 313/318 (98.43%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           T TAAAPAVGDESKVSEHNREEV DEE SEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAAAPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLM 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQL+
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240

Query: 241 EAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMT 300
           EAFFSELGKPTLS+TN NAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDN T
Sbjct: 241 EAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNTT 300

Query: 301 KAEDNGRMLGDSSSDDDD 318
           KAEDNGRMLGDSSSDDDD
Sbjct: 301 KAEDNGRMLGDSSSDDDD 318

[Close]

BLAST of Cp4.1LG04g04260 vs. ExPASy TrEMBL
Match: A0A6J1JMD3 (RRP15-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486494 PE=3 SV=1)

HSP 1 Score: 575 bits (1481), Expect = 4.85e-206
Identity = 309/318 (97.17%), Postives = 311/318 (97.80%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           T TAAAPAVGDESKVSEHNREEV DEE SEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAAAPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLM 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSAN+KLVAEKLAEEEAERKV GEAKKEKQLM
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANRKLVAEKLAEEEAERKVTGEAKKEKQLM 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRK 240

Query: 241 EAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMT 300
           EAFFSELGKPTLS+TN NAKGNTSGDAAEAE PAWAPLRDNYMLTNSKLKDWDKMPDN T
Sbjct: 241 EAFFSELGKPTLSATNNNAKGNTSGDAAEAEEPAWAPLRDNYMLTNSKLKDWDKMPDNTT 300

Query: 301 KAEDNGRMLGDSSSDDDD 318
           KAEDNGRMLGDSSSDDDD
Sbjct: 301 KAEDNGRMLGDSSSDDDD 318

[Close]

BLAST of Cp4.1LG04g04260 vs. ExPASy TrEMBL
Match: A0A6J1C2C5 (RRP15-like protein OS=Momordica charantia OX=3673 GN=LOC111007639 PE=3 SV=1)

HSP 1 Score: 468 bits (1204), Expect = 8.00e-164
Identity = 258/313 (82.43%), Postives = 278/313 (88.82%), Query Frame = 0


Query: 6   ELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDDTKTAA 65
           E + G KR KKIGSRNKKRPRM GG GNKVK+DRKM+KLFRKRAREYNSDD+DD+ + AA
Sbjct: 9   ETVGGAKRRKKIGSRNKKRPRMTGGGGNKVKVDRKMKKLFRKRAREYNSDDDDDEEEEAA 68

Query: 66  APAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITKFIEGC 125
           APAVGDES VS  + EE  DEE  E E  EG DVN+DA LSEDDE+G +QPGITKF EGC
Sbjct: 69  APAVGDESTVSLRSPEEDRDEEFPEDEGGEGKDVNADAELSEDDENGEIQPGITKFTEGC 128

Query: 126 RAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLMAEKGH 185
           RAFRAAFRSILKKS+SDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQL+AEKGH
Sbjct: 129 RAFRAAFRSILKKSVSDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLVAEKGH 188

Query: 186 VKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRKEAFFS 245
           VKPA YLD HEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAI+KRRKEAFFS
Sbjct: 189 VKPANYLDFHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAITKRRKEAFFS 248

Query: 246 ELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMTKAEDN 305
           ELGK TLS+TN N+K NTS  A +AEGPAWAPLRDNYMLTNSKLKDWDKMPD  T +ED+
Sbjct: 249 ELGKTTLSATN-NSKVNTSAGAVDAEGPAWAPLRDNYMLTNSKLKDWDKMPDTTTLSEDD 308

Query: 306 GRMLGDSSSDDDD 318
           GRML +SSSDD+D
Sbjct: 309 GRMLENSSSDDED 320

[Close]

BLAST of Cp4.1LG04g04260 vs. ExPASy TrEMBL
Match: A0A1S3CFX9 (RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=3 SV=1)

HSP 1 Score: 468 bits (1204), Expect = 8.00e-164
Identity = 260/315 (82.54%), Postives = 284/315 (90.16%), Query Frame = 0


Query: 6   ELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDDTKTAA 65
           EL+RG KR KK+GSRNKKRPRMMGGSGNK K+D+KM+KLF+KRAREYNSDD+D+D + A 
Sbjct: 9   ELVRGAKRRKKMGSRNKKRPRMMGGSGNKAKVDKKMKKLFQKRAREYNSDDDDNDGEKA- 68

Query: 66  APAVGDESKVSEHNREEVV-DEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITKFIEG 125
            P V +ESK+  H+ EE V DEE+SEGEEE   DVN+D  LSEDDE+G +QPGITKF EG
Sbjct: 69  -PTVKNESKILVHSHEEEVGDEELSEGEEER-KDVNADVELSEDDENGEIQPGITKFTEG 128

Query: 126 CRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLMAEKG 185
           CRAFRAAF SILKK+ISDETLGPILSANKKLVAEKLAEEEAERKVKGEA+K KQL+ EKG
Sbjct: 129 CRAFRAAFISILKKNISDETLGPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKG 188

Query: 186 HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRKEAFF 245
           HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSR KDAKAI+KRRKEAFF
Sbjct: 189 HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRTKDAKAINKRRKEAFF 248

Query: 246 SELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNM-TKAE 305
           SELGKPTLS+TN NAK NTSG AA+AEGPAWAPLRDNYMLTNSKLKDWDKMPDNM T AE
Sbjct: 249 SELGKPTLSATNSNAKLNTSGGAADAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMMTAAE 308

Query: 306 DNGRMLGDSSSDDDD 318
           DNGR+L DSSSD+DD
Sbjct: 309 DNGRVLEDSSSDEDD 320

[Close]

BLAST of Cp4.1LG04g04260 vs. ExPASy TrEMBL
Match: A0A0A0K320 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=3 SV=1)

HSP 1 Score: 464 bits (1194), Expect = 2.66e-162
Identity = 260/315 (82.54%), Postives = 280/315 (88.89%), Query Frame = 0


Query: 6   ELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDDTKTAA 65
           EL+RG KR KK+GSRN KRPRMMGGSGNKVKID+KM+KLF+KRAREYNSDD+DDD + A 
Sbjct: 9   ELVRGAKRRKKMGSRNNKRPRMMGGSGNKVKIDKKMKKLFQKRAREYNSDDDDDDGEKA- 68

Query: 66  APAVGDESKVSEHNREEVV-DEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITKFIEG 125
            P V  ESK+   + EE V DEE SEGEEE   DVN+D  LSEDDE+G +QPGITKF EG
Sbjct: 69  -PRVKKESKILVRSHEEEVGDEEFSEGEEER-KDVNADVELSEDDENGEIQPGITKFTEG 128

Query: 126 CRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLMAEKG 185
           CRAFRAAF SILKK+ISDETLGPILSANKKLVAEKLAEEEAERKVKGEA+K KQL+ EKG
Sbjct: 129 CRAFRAAFMSILKKNISDETLGPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKG 188

Query: 186 HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRKEAFF 245
           HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSR KDAKAI+KRRKEAFF
Sbjct: 189 HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRTKDAKAINKRRKEAFF 248

Query: 246 SELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNM-TKAE 305
           SELGKPTLS+TN NAK NTSG AA+ EGPAWAPLRDNYMLTNSKLKDWDKMPDNM T AE
Sbjct: 249 SELGKPTLSATNSNAKLNTSGGAADTEGPAWAPLRDNYMLTNSKLKDWDKMPDNMMTAAE 308

Query: 306 DNGRMLGDSSSDDDD 318
           DNGR+L DSSSD+DD
Sbjct: 309 DNGRVLEDSSSDEDD 320

[Close]

BLAST of Cp4.1LG04g04260 vs. TAIR 10
Match: AT5G48240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). )

HSP 1 Score: 268.5 bits (685), Expect = 7.0e-72
Identity = 170/320 (53.12%), Postives = 216/320 (67.50%), Query Frame = 0


Query: 1   MAEEGELMR--GTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNS-DDE 60
           MA+ G   R  G K+  K  +RNKK+ +    + ++ K+  K QKLF+KRAR+YNS DDE
Sbjct: 11  MADRGSRKRRVGVKKGTK-AARNKKQ-KSKPSTSDRFKVTMKNQKLFQKRARDYNSDDDE 70

Query: 61  DDDTKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPG 120
           ++D ++   P V    K+          EEI     EE ND NSD      ++ G ++ G
Sbjct: 71  EEDDESKKQPEVTIREKIFSDANMGPNYEEIG----EEDNDENSDG-----EDHGEIESG 130

Query: 121 ITKF-IEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKE 180
           ITKF  +GC AF+ AF++I+KK+  D+TLGP+LSA+K L+ EKLAE+EAE+K KG+A+K 
Sbjct: 131 ITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKHLIGEKLAEDEAEKKAKGQARKA 190

Query: 181 KQLMAEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAIS 240
           K L+AEKGHVKP +YLDSHEK LIGVATKGVVKLFNAVNKAQHAQKGLNPSR+KDAK + 
Sbjct: 191 KHLIAEKGHVKPGSYLDSHEKILIGVATKGVVKLFNAVNKAQHAQKGLNPSRSKDAKVLK 250

Query: 241 KRRKEAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMP 300
           KRRKEAF SELGK          K +T    +E E P WAPLRDNYML N KLKDWDK  
Sbjct: 251 KRRKEAFLSELGK---------TKTDTKAHKSEDEAPVWAPLRDNYMLANPKLKDWDKKQ 309

Query: 301 DNMTKAEDNGRMLGDSSSDD 317
           +  ++ +D   + GD S +D
Sbjct: 311 ET-SEGDDFAGLSGDESYED 309

[Close]

BLAST of Cp4.1LG04g04260 vs. TAIR 10
Match: AT5G48240.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 286 Blast hits to 283 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 97; Plants - 41; Viruses - 1; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 258.1 bits (658), Expect = 9.5e-69
Identity = 173/358 (48.32%), Postives = 221/358 (61.73%), Query Frame = 0


Query: 1   MAEEGELMR--GTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNS-DDE 60
           MA+ G   R  G K+  K  +RNKK+ +    + ++ K+  K QKLF+KRAR+YNS DDE
Sbjct: 11  MADRGSRKRRVGVKKGTK-AARNKKQ-KSKPSTSDRFKVTMKNQKLFQKRARDYNSDDDE 70

Query: 61  DDDTKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPG 120
           ++D ++   P V    K+          EEI     EE ND NSD      ++ G ++ G
Sbjct: 71  EEDDESKKQPEVTIREKIFSDANMGPNYEEIG----EEDNDENSDG-----EDHGEIESG 130

Query: 121 ITKF-IEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKE 180
           ITKF  +GC AF+ AF++I+KK+  D+TLGP+LSA+K L+ EKLAE+EAE+K KG+A+K 
Sbjct: 131 ITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKHLIGEKLAEDEAEKKAKGQARKA 190

Query: 181 KQLMAEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAIS 240
           K L+AEKGHVKP +YLDSHEK LIGVATKGVVKLFNAVNKAQHAQKGLNPSR+KDAK + 
Sbjct: 191 KHLIAEKGHVKPGSYLDSHEKILIGVATKGVVKLFNAVNKAQHAQKGLNPSRSKDAKVLK 250

Query: 241 KRRKEAFFSELGK---------------------PTLSSTNRN----------------- 300
           KRRKEAF SELGK                       + S  +N                 
Sbjct: 251 KRRKEAFLSELGKTKTDTKPFDARRNKLVFCLDLAPIESHEKNHLMSESKLVFCLELASI 310

Query: 301 AKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNMTKAEDNGRMLGDSSSDD 317
            KG+ S   +E E P WAPLRDNYML N KLKDWDK  +  ++ +D   + GD S +D
Sbjct: 311 EKGSPSAHKSEDEAPVWAPLRDNYMLANPKLKDWDKKQET-SEGDDFAGLSGDESYED 356

[Close]

BLAST of Cp4.1LG04g04260 vs. TAIR 10
Match: AT5G48240.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 226.5 bits (576), Expect = 3.1e-59
Identity = 142/253 (56.13%), Postives = 180/253 (71.15%), Query Frame = 0


Query: 1   MAEEGELMR--GTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNS-DDE 60
           MA+ G   R  G K+  K  +RNKK+ +    + ++ K+  K QKLF+KRAR+YNS DDE
Sbjct: 11  MADRGSRKRRVGVKKGTK-AARNKKQ-KSKPSTSDRFKVTMKNQKLFQKRARDYNSDDDE 70

Query: 61  DDDTKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPG 120
           ++D ++   P V    K+          EEI     EE ND NSD      ++ G ++ G
Sbjct: 71  EEDDESKKQPEVTIREKIFSDANMGPNYEEIG----EEDNDENSDG-----EDHGEIESG 130

Query: 121 ITKF-IEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKE 180
           ITKF  +GC AF+ AF++I+KK+  D+TLGP+LSA+K L+ EKLAE+EAE+K KG+A+K 
Sbjct: 131 ITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKHLIGEKLAEDEAEKKAKGQARKA 190

Query: 181 KQLMAEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKAIS 240
           K L+AEKGHVKP +YLDSHEK LIGVATKGVVKLFNAVNKAQHAQKGLNPSR+KDAK + 
Sbjct: 191 KHLIAEKGHVKPGSYLDSHEKILIGVATKGVVKLFNAVNKAQHAQKGLNPSRSKDAKVLK 250

Query: 241 KRRKEAFFSELGK 250
           KRRKEAF SELGK
Sbjct: 251 KRRKEAFLSELGK 252

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g04260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T062	4.8e-09	30.90	RRP15-like protein OS=Bos taurus OX=9913 GN=RRP15 PE=2 SV=1	[more]
Q9CYX7	2.6e-07	30.30	RRP15-like protein OS=Mus musculus OX=10090 GN=Rrp15 PE=1 SV=2	[more]
Q5M947	1.5e-05	28.62	RRP15-like protein OS=Rattus norvegicus OX=10116 GN=Rrp15 PE=1 SV=1	[more]
Q9Y3B9	5.5e-05	29.41	RRP15-like protein OS=Homo sapiens OX=9606 GN=RRP15 PE=1 SV=2	[more]

BLAST of Cp4.1LG04g04260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529755.1	9.78e-213	100.00	RRP15-like protein [Cucurbita pepo subsp. pepo]	[more]
XP_022928388.1	1.05e-207	97.80	RRP15-like protein [Cucurbita moschata]	[more]
KAG6589088.1	3.00e-207	97.48	RRP15-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022989440.1	1.00e-205	97.17	RRP15-like protein [Cucurbita maxima]	[more]
KAG7022795.1	6.30e-203	93.35	RRP15-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG04g04260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ENV8	5.07e-208	97.80	RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435218 PE=3 SV=1	[more]
A0A6J1JMD3	4.85e-206	97.17	RRP15-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486494 PE=3 SV=1	[more]
A0A6J1C2C5	8.00e-164	82.43	RRP15-like protein OS=Momordica charantia OX=3673 GN=LOC111007639 PE=3 SV=1	[more]
A0A1S3CFX9	8.00e-164	82.54	RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=3 SV=1	[more]
A0A0A0K320	2.66e-162	82.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=3 SV=1	[more]

BLAST of Cp4.1LG04g04260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48240.1	7.0e-72	53.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G48240.3	9.5e-69	48.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G48240.2	3.1e-59	56.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 162..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..263
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..318
IPR012459	Ribosomal RNA-processing protein 15	PFAM	PF07890	Rrp15p	coord: 128..247 e-value: 1.2E-19 score: 71.0
IPR012459	Ribosomal RNA-processing protein 15	PANTHER	PTHR13245	RRP15-LIKE PROTEIN	coord: 8..315

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g04260.1	Cp4.1LG04g04260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0030687	preribosome, large subunit precursor