Cp4.1LG04g04250 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g04250
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG04: 6755657 .. 6756410 (-)
RNA-Seq Expression	Cp4.1LG04g04250
Synteny	Cp4.1LG04g04250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCGTTGCTGTTGCAATTTCAATATCGCTTTCGAGTTTCAAAGATTTTGTTTTCAACAATTTGGAATTGGGAAAGAGCATCTCCTCTGCTCCACAATCCATTACGAACGCCGGATTTCTCGCTTTCGCCGGTGCAATCTCGCTGTTGCAGCTCGAATTCCATGGATGACGATTGCGCCTTCTCAAAGTCTGAGCCGAGAAGCAGCTCACCGCACCGGCGTTCTCCTCCGGATCCACGAGAAGCTCGTCGAGTTCCGAAATTCACCGGGGAAGTATCTGCTTCTTACCCTGAGGATAATTGGAACCAACGCGTTAATGAACATTCTGAAGGGTCGGTTTCTCGGCAAAGGAGTGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAATGCTGATAATCAGAGTAGTAGTAAAGAGAAGACCGAGCAGAGCTCTTCTGCTCGGGTTTCTGAATCAATGTAGGAGGAGGAGGAGGAGCCGCAACCGCCGCAACCTCCGCGTCCTCTAGAAGCTGATGAGATATTCAGAAAATGAAGGAGACAGGTCTAATTCCTAACGCTGTCGCCATGCTTGATGGGCTATGAAACTCTTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTTACACCGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGAAGAAGCTATTAGGATCTTCAGGAAAATGCAGAATAATGGCATTTCTCCTAATGCTTGA

mRNA sequence

ATGGGAGCGTTGCTGTTGCAATTTCAATATCGCTTTCGAGTTTCAAAGATTTTGTTTTCAACAATTTGGAATTGGGAAAGAGCATCTCCTCTGCTCCACAATCCATTACGAACGCCGGATTTCTCGCTTTCGCCGGTGCAATCTCGCTGTTGCAGCTCGAATTCCATGGATGACGATTGCGCCTTCTCAAAGTCTGAGCCGAGAAGCAGCTCACCGCACCGGCGTTCTCCTCCGGATCCACGAGAAGCTCGTCGAGTTCCGAAATTCACCGGGGAAGTATCTGCTTCTTACCCTGAGGATAATTGGAACCAACGCGTTAATGAACATTCTGAAGGGTCGGTTTCTCGGCAAAGGAGTGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAATGCTGATAATCAGAGTAGTAGTAAAGAGAAGACCGAGCAGAGCTCTTCTGCTCGGGGTACAATTCCAGAAGTTGTGGTTTACACCGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGAAGAAGCTATTAGGATCTTCAGGAAAATGCAGAATAATGGCATTTCTCCTAATGCTTGA

Coding sequence (CDS)

ATGGGAGCGTTGCTGTTGCAATTTCAATATCGCTTTCGAGTTTCAAAGATTTTGTTTTCAACAATTTGGAATTGGGAAAGAGCATCTCCTCTGCTCCACAATCCATTACGAACGCCGGATTTCTCGCTTTCGCCGGTGCAATCTCGCTGTTGCAGCTCGAATTCCATGGATGACGATTGCGCCTTCTCAAAGTCTGAGCCGAGAAGCAGCTCACCGCACCGGCGTTCTCCTCCGGATCCACGAGAAGCTCGTCGAGTTCCGAAATTCACCGGGGAAGTATCTGCTTCTTACCCTGAGGATAATTGGAACCAACGCGTTAATGAACATTCTGAAGGGTCGGTTTCTCGGCAAAGGAGTGAGTCTTTGTCTCAGAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAATGCTGATAATCAGAGTAGTAGTAAAGAGAAGACCGAGCAGAGCTCTTCTGCTCGGGGTACAATTCCAGAAGTTGTGGTTTACACCGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGAAGAAGCTATTAGGATCTTCAGGAAAATGCAGAATAATGGCATTTCTCCTAATGCTTGA

Protein sequence

MGALLLQFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDCAFSKSEPRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGSVSRQRSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSARGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPNA

Homology

[Close]

BLAST of Cp4.1LG04g04250 vs. ExPASy Swiss-Prot
Match: Q9SZL5 (Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX=3702 GN=At4g38150 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-12
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 154 RGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPNA 196
           +GTIPEVV+YTAVV+ FCKA K+E+A RIFRKMQNNGI+PNA
Sbjct: 160 KGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNA 201

[Close]

BLAST of Cp4.1LG04g04250 vs. ExPASy Swiss-Prot
Match: Q940A6 (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 9.8e-05
Identity = 17/41 (41.46%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 154 RGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPN 195
           +G  P+V ++T  ++ FCK  K+EEA+++F KM+  G++PN
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPN 307

[Close]

BLAST of Cp4.1LG04g04250 vs. ExPASy Swiss-Prot
Match: Q9FLL3 (Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g41170 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 17/41 (41.46%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 154 RGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPN 195
           +G  P+VV YT++++GFCK +K+++A++IF +M   G++ N
Sbjct: 311 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGN 351

[Close]

BLAST of Cp4.1LG04g04250 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 6.4e-04
Identity = 19/46 (41.30%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 150 SSSARGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPNA 196
           S S +G  P V++YT ++ GFC+    EEA  +FR+M+ +G  PN+
Sbjct: 525 SLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNS 570

[Close]

BLAST of Cp4.1LG04g04250 vs. ExPASy Swiss-Prot
Match: Q9FMF6 (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.3e-04
Identity = 15/41 (36.59%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 154 RGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPN 195
           RG+ P++V + ++++G C+A ++E+ + +FRK+Q  GI P+
Sbjct: 628 RGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 668

[Close]

BLAST of Cp4.1LG04g04250 vs. NCBI nr
Match: XP_022969144.1 (pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima] >XP_022969146.1 pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima])

HSP 1 Score: 266 bits (681), Expect = 1.59e-85
Identity = 162/264 (61.36%), Postives = 171/264 (64.77%), Query Frame = 0


Query: 1   MGALLLQFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDC 60
           MGAL +Q Q R RVSKILFSTI NWER  PLLH+PLRTPD SLSPV+SRC SSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILFSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF GEVSA YPEDN NQR N H EGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHWEGSESRFANE 120

Query: 121 --VSRQRSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSA------------------ 180
             +SR+RSESLSQKDFSFLEKFKLN DN S+S EKTE SSSA                  
Sbjct: 121 GPMSRRRSESLSQKDFSFLEKFKLNTDNLSTSTEKTEPSSSAQFSESMQGKQSQPQCPPE 180

Query: 181 ------------------------------------------RGTIPEVVVYTAVVDGFC 195
                                                     +GTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

[Close]

BLAST of Cp4.1LG04g04250 vs. NCBI nr
Match: XP_022952706.1 (pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata] >XP_022952707.1 pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata])

HSP 1 Score: 266 bits (681), Expect = 1.59e-85
Identity = 162/264 (61.36%), Postives = 171/264 (64.77%), Query Frame = 0


Query: 1   MGALLLQFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDC 60
           MGAL +Q Q R RVSKIL STI NWER  PLLH+PLRTPD SLSPV+SRC SSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF GEVSA YPEDN NQR N HSEGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAND 120

Query: 121 --VSRQRSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSA------------------ 180
             +SR R+ESLSQKDFSFLEKFKLN DNQS+S EK E SSSA                  
Sbjct: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQISESMQGKQSQPQCPPE 180

Query: 181 ------------------------------------------RGTIPEVVVYTAVVDGFC 195
                                                     +GTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

[Close]

BLAST of Cp4.1LG04g04250 vs. NCBI nr
Match: KAG7011839.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266 bits (680), Expect = 2.25e-85
Identity = 162/264 (61.36%), Postives = 170/264 (64.39%), Query Frame = 0


Query: 1   MGALLLQFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDC 60
           MGAL +Q Q R RVSKIL STI NWER  PLLH+PLRTPD SLSPV+SRC SSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGS------- 120
            FSKSEPRSS P RRSPPDPREARRVPKF GEVSA YPEDN NQR N HSEGS       
Sbjct: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120

Query: 121 --VSRQRSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSA------------------ 180
             +SR R+ESLSQKDFSFLEKFKLN DNQS+S EK E SSSA                  
Sbjct: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180

Query: 181 ------------------------------------------RGTIPEVVVYTAVVDGFC 195
                                                     +GTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

[Close]

BLAST of Cp4.1LG04g04250 vs. NCBI nr
Match: KAG6572199.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266 bits (681), Expect = 2.51e-85
Identity = 162/264 (61.36%), Postives = 171/264 (64.77%), Query Frame = 0


Query: 1   MGALLLQFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDC 60
           MGAL +Q Q R RVSKIL STI NWER  PLLH+PLRTPD SLSPV+SRC SSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF GEVSA YPEDN NQR N HSEGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120

Query: 121 --VSRQRSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSA------------------ 180
             +SR R+ESLSQKDFSFLEKFKLN DNQS+S EK E SSSA                  
Sbjct: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGKQSQPQCPPE 180

Query: 181 ------------------------------------------RGTIPEVVVYTAVVDGFC 195
                                                     +GTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

[Close]

BLAST of Cp4.1LG04g04250 vs. NCBI nr
Match: XP_023554525.1 (pentatricopeptide repeat-containing protein At4g38150-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554526.1 pentatricopeptide repeat-containing protein At4g38150-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265 bits (676), Expect = 9.08e-85
Identity = 161/264 (60.98%), Postives = 171/264 (64.77%), Query Frame = 0


Query: 1   MGALLLQFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDC 60
           MGAL +Q Q R RVSKIL STI NWER  PLLH+PLRTPD SLSPV+SRC SSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF GE SA YPEDN NQR N HSEGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEGSAPYPEDNRNQRFNRHSEGSSSRFANE 120

Query: 121 --VSRQRSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSA------------------ 180
             +SR+R+ESLSQKDFSFLEKFKLN DNQS+S EK E SSSA                  
Sbjct: 121 GPMSRRRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQFSESMQGEQSQPQCPPE 180

Query: 181 ------------------------------------------RGTIPEVVVYTAVVDGFC 195
                                                     +GTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

[Close]

BLAST of Cp4.1LG04g04250 vs. ExPASy TrEMBL
Match: A0A6J1I1Q2 (pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita maxima OX=3661 GN=LOC111468227 PE=4 SV=1)

HSP 1 Score: 266 bits (681), Expect = 7.71e-86
Identity = 162/264 (61.36%), Postives = 171/264 (64.77%), Query Frame = 0


Query: 1   MGALLLQFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDC 60
           MGAL +Q Q R RVSKILFSTI NWER  PLLH+PLRTPD SLSPV+SRC SSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILFSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF GEVSA YPEDN NQR N H EGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHWEGSESRFANE 120

Query: 121 --VSRQRSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSA------------------ 180
             +SR+RSESLSQKDFSFLEKFKLN DN S+S EKTE SSSA                  
Sbjct: 121 GPMSRRRSESLSQKDFSFLEKFKLNTDNLSTSTEKTEPSSSAQFSESMQGKQSQPQCPPE 180

Query: 181 ------------------------------------------RGTIPEVVVYTAVVDGFC 195
                                                     +GTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

[Close]

BLAST of Cp4.1LG04g04250 vs. ExPASy TrEMBL
Match: A0A6J1GKZ0 (pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita moschata OX=3662 GN=LOC111455321 PE=4 SV=1)

HSP 1 Score: 266 bits (681), Expect = 7.71e-86
Identity = 162/264 (61.36%), Postives = 171/264 (64.77%), Query Frame = 0


Query: 1   MGALLLQFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDC 60
           MGAL +Q Q R RVSKIL STI NWER  PLLH+PLRTPD SLSPV+SRC SSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF GEVSA YPEDN NQR N HSEGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAND 120

Query: 121 --VSRQRSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSA------------------ 180
             +SR R+ESLSQKDFSFLEKFKLN DNQS+S EK E SSSA                  
Sbjct: 121 GPMSRPRNESLSQKDFSFLEKFKLNTDNQSTSTEKIEPSSSAQISESMQGKQSQPQCPPE 180

Query: 181 ------------------------------------------RGTIPEVVVYTAVVDGFC 195
                                                     +GTIPEVVVYTAVVDGFC
Sbjct: 181 ADEIFRKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVVYTAVVDGFC 240

[Close]

BLAST of Cp4.1LG04g04250 vs. ExPASy TrEMBL
Match: A0A6J1C2J3 (pentatricopeptide repeat-containing protein At4g38150 OS=Momordica charantia OX=3673 GN=LOC111007869 PE=4 SV=1)

HSP 1 Score: 243 bits (621), Expect = 9.00e-77
Identity = 151/264 (57.20%), Postives = 165/264 (62.50%), Query Frame = 0


Query: 1   MGALLLQFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDC 60
           M AL LQ Q R R+SKI+ S+IW  ER  PLLH+ LRT DFSL P QSRC SSNSMDDD 
Sbjct: 1   MAALQLQLQSRLRMSKIVSSSIWKCERQLPLLHDSLRTQDFSLLPTQSRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGS------- 120
           A S SEPRS+ PHRRSPPD RE RRVPKF+  VSASYP D+ N+R+N+ SEGS       
Sbjct: 61  AISNSEPRSNPPHRRSPPDSREPRRVPKFSDGVSASYPGDDRNRRINKRSEGSSFRFDNE 120

Query: 121 --VSRQRSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSAR----------------- 180
             +SRQRSE LSQKDFSFLEKFKLN DNQSSSKEKTEQSS+ R                 
Sbjct: 121 GGISRQRSEFLSQKDFSFLEKFKLNTDNQSSSKEKTEQSSAPRFSESVQEKQSQPQRPPE 180

Query: 181 -------------------------------------------GTIPEVVVYTAVVDGFC 195
                                                      GTIPEVV+YTAVVDGFC
Sbjct: 181 ADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTAVVDGFC 240

[Close]

BLAST of Cp4.1LG04g04250 vs. ExPASy TrEMBL
Match: A0A1S3CFW0 (pentatricopeptide repeat-containing protein At4g38150 OS=Cucumis melo OX=3656 GN=LOC103500481 PE=4 SV=1)

HSP 1 Score: 220 bits (561), Expect = 8.96e-68
Identity = 144/260 (55.38%), Postives = 157/260 (60.38%), Query Frame = 0


Query: 7   QFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDCAFSKSE 66
           QFQ R +VSKIL S+I  WE   PLLHNPLRTPDFSLSP  SR  SSNSMDDD AFS+SE
Sbjct: 5   QFQSRLQVSKILSSSIRKWEIDFPLLHNPLRTPDFSLSPAPSRRFSSNSMDDDRAFSESE 64

Query: 67  PRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGS---------VSRQ 126
           PR++ P RR PPD REARRVP+  G V+ SY  DN NQR N HSEGS          SRQ
Sbjct: 65  PRNTPPQRRFPPDHREARRVPR--GGVTDSY--DNRNQRFNRHSEGSSSRFTNEGSTSRQ 124

Query: 127 RSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSA------------------------ 186
           RSESLSQKDFSFLEKFKLN DNQSS  EKTE++SS+                        
Sbjct: 125 RSESLSQKDFSFLEKFKLNTDNQSSGNEKTEENSSSAPVSESMQEKQQSQHQRPPAADEI 184

Query: 187 --------------------------------------RGTIPEVVVYTAVVDGFCKAEK 195
                                                 +GTIPEVV+YTAVVDGFCKAEK
Sbjct: 185 FRKMKESGLIPNAVAMLDGLCKDGLIQEAMKLFALIREKGTIPEVVIYTAVVDGFCKAEK 244

[Close]

BLAST of Cp4.1LG04g04250 vs. ExPASy TrEMBL
Match: A0A5D3D5J5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00030 PE=4 SV=1)

HSP 1 Score: 220 bits (561), Expect = 8.96e-68
Identity = 144/260 (55.38%), Postives = 157/260 (60.38%), Query Frame = 0


Query: 7   QFQYRFRVSKILFSTIWNWERASPLLHNPLRTPDFSLSPVQSRCCSSNSMDDDCAFSKSE 66
           QFQ R +VSKIL S+I  WE   PLLHNPLRTPDFSLSP  SR  SSNSMDDD AFS+SE
Sbjct: 5   QFQSRLQVSKILSSSIRKWEIDFPLLHNPLRTPDFSLSPAPSRRFSSNSMDDDRAFSESE 64

Query: 67  PRSSSPHRRSPPDPREARRVPKFTGEVSASYPEDNWNQRVNEHSEGS---------VSRQ 126
           PR++ P RR PPD REARRVP+  G V+ SY  DN NQR N HSEGS          SRQ
Sbjct: 65  PRNTPPQRRFPPDHREARRVPR--GGVTDSY--DNRNQRFNRHSEGSSSRFTNEGSTSRQ 124

Query: 127 RSESLSQKDFSFLEKFKLNADNQSSSKEKTEQSSSA------------------------ 186
           RSESLSQKDFSFLEKFKLN DNQSS  EKTE++SS+                        
Sbjct: 125 RSESLSQKDFSFLEKFKLNTDNQSSGNEKTEENSSSAPVSESMQEKQQSQHQRPPAADEI 184

Query: 187 --------------------------------------RGTIPEVVVYTAVVDGFCKAEK 195
                                                 +GTIPEVV+YTAVVDGFCKAEK
Sbjct: 185 FRKMKESGLIPNAVAMLDGLCKDGLIQEAMKLFALIREKGTIPEVVIYTAVVDGFCKAEK 244

[Close]

BLAST of Cp4.1LG04g04250 vs. TAIR 10
Match: AT4G38150.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 154 RGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPNA 196
           +GTIPEVV+YTAVV+ FCKA K+E+A RIFRKMQNNGI+PNA
Sbjct: 160 KGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNA 201

[Close]

BLAST of Cp4.1LG04g04250 vs. TAIR 10
Match: AT4G38150.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 154 RGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPNA 196
           +GTIPEVV+YTAVV+ FCKA K+E+A RIFRKMQNNGI+PNA
Sbjct: 160 KGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNA 201

[Close]

BLAST of Cp4.1LG04g04250 vs. TAIR 10
Match: AT4G19440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 7.0e-06
Identity = 17/41 (41.46%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 154 RGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPN 195
           +G  P+V ++T  ++ FCK  K+EEA+++F KM+  G++PN
Sbjct: 254 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPN 294

[Close]

BLAST of Cp4.1LG04g04250 vs. TAIR 10
Match: AT4G19440.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 7.0e-06
Identity = 17/41 (41.46%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 154 RGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPN 195
           +G  P+V ++T  ++ FCK  K+EEA+++F KM+  G++PN
Sbjct: 254 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPN 294

[Close]

BLAST of Cp4.1LG04g04250 vs. TAIR 10
Match: AT5G41170.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 9.1e-06
Identity = 17/41 (41.46%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 154 RGTIPEVVVYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPN 195
           +G  P+VV YT++++GFCK +K+++A++IF +M   G++ N
Sbjct: 311 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGN 351

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g04250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL5	1.7e-12	78.57	Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX...	[more]
Q940A6	9.8e-05	41.46	Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidop...	[more]
Q9FLL3	1.3e-04	41.46	Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidop...	[more]
Q9LQ14	6.4e-04	41.30	Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop...	[more]
Q9FMF6	8.3e-04	36.59	Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop...	[more]

BLAST of Cp4.1LG04g04250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022969144.1	1.59e-85	61.36	pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima] >X...	[more]
XP_022952706.1	1.59e-85	61.36	pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata] ...	[more]
KAG7011839.1	2.25e-85	61.36	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG6572199.1	2.51e-85	61.36	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023554525.1	9.08e-85	60.98	pentatricopeptide repeat-containing protein At4g38150-like isoform X1 [Cucurbita...	[more]

BLAST of Cp4.1LG04g04250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1Q2	7.71e-86	61.36	pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita maxima O...	[more]
A0A6J1GKZ0	7.71e-86	61.36	pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita moschata...	[more]
A0A6J1C2J3	9.00e-77	57.20	pentatricopeptide repeat-containing protein At4g38150 OS=Momordica charantia OX=...	[more]
A0A1S3CFW0	8.96e-68	55.38	pentatricopeptide repeat-containing protein At4g38150 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3D5J5	8.96e-68	55.38	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG04g04250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38150.1	1.2e-13	78.57	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G38150.2	1.2e-13	78.57	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G19440.1	7.0e-06	41.46	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G19440.2	7.0e-06	41.46	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G41170.1	9.1e-06	41.46	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 113..195 e-value: 2.3E-11 score: 45.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 158..195 e-value: 3.9E-11 score: 43.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 161..195 e-value: 6.2E-11 score: 39.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 159..193 score: 13.098811
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..121
None	No IPR available	PANTHER	PTHR45613:SF39	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 154..195
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 154..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g04250.1	Cp4.1LG04g04250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding