Cp4.1LG04g04240 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g04240
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	AP complex subunit sigma
Location	Cp4.1LG04: 6748981 .. 6752891 (-)
RNA-Seq Expression	Cp4.1LG04g04240
Synteny	Cp4.1LG04g04240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGCTTGGCATTAGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCTTCTTCACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGACGTTCCTCGAGAGCATGATCGGGATTCTGTCGGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCTACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCAAAGAGCCGCATCGTGGCGGCGGATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGGGTTCACCGGAGAAGATTTGGTGAGCCAACTGCATAGATGTAGCCATATTTTTCATTATGAATGTATTGAGAATTGGCTCCATAGAAATCATTTTACCTGCCCTTTGTGCAGATCCTTCCTCTCTTCTACAGTGTAAATCCTTTTGGAACTTGAACTCCAATGTCCATGGTTTATAGATAGTAGTAGTAAAATTTAATTCGAATTTCGTAGTTTTAGCTTGGATTGTCGTCGTACTCATCAAACGACGACAGAATATACTCTTTTTGTGTAGTATTTGACATATCATTTGATGATTTATTATCTTGATTTACAAGCTCAACAACGTTCTTAAATGTTTCATTAAAATTGTTATTGAATTGCAACCTCGAGCAATTTTATTGTAATGTTTATGATTACGATAGATTTGTTTTTGTAGTTTTTTAAAACCCAATTGTTTTTGGAATATTTGCTTTTATTTTTGTAAAAAAAAAAAAAAAAAAAATATTTGGCTTTTTTTATAGTTAAAATGTAGTTTTAATTGCTCATTTTTTATACTTTGTTTTTTTTTTCTTTATAATTTAATCCCACGCGCTCACGCTTGGGAACAAGGTCAACGCTTTAAAAAACAATAAAATGTCAACGACTAGAACTTTTTTTTTAAATGTCAACGATTTTCCGGGAAAAAGAACTATCAGATTCGCAGAGCTTTGAGATTGGGCTTGTAATTCGCTGGTGGACTCGGCCCAATATCACTAAATGGGCCTAAATGGACTCGGCCCATTTTGCACCCCGAAGCCGCAAAGCTTGTAATTCGCTTGTATAAAAGCCCAACGGCCCAATATCACTAAATGGGCCTAAATGAACTCGGCCCATTTTGCACCCCGAAGCCTTCGGCGGGTAGGAATTCTGAGTGAAATATATTTTTGCAGCGGAACAACGGACAAGGAACTGTCCTTGATCGGAGGGATCGGTTGAGGATTCTGGAATTGAAACTTTTGATACCTGAAAGTTCAGACCAAAATGGTAATTGATTTCATTGCTTTGATTCATTTCTAGGCTTTGATTGTTTCAATGTTGAAATTGCTACGCTCTTGTTGTTGTTAGTCCACCGGTTCGCGCATCTGCTTTGCTCTTTCTTGATGCGATGGAAATTAACCAAAGAGAAAATGACGACTTAAAAACACAGCAAACTTTAATAAACCTCACTAGAGCCACAACATTTCTAAGTATAGAAACGAAAGCTGACATCCGAATTGCTCAACTTTTGTTTCTTTTTGTTGTTTGATTCGTCGTGTTCGTTCCTGCTGAATTGTTGTGGCGATTCTTGTTTCACTTCGTTTGTTCTCAAGCTTGTGAATGTGCTTCAGCCATGGGTTCCTGAACGATTAAATTCTCAACGACTTTTGTAAATTACCTGTAAGATCTTATTATTGTGGATTGGAGCCCCCTTCTATATCTCCTAATCATTCAAACTTTCTCAATAATGCGTGGTTTCTCATAGAAAAATAAACTTTCTTCAGTGCAACTTAGGTTATCTTCAACCTTTTGTTGCTCCAGTAAAGAAAATTTGGCCTAGCGTATGTCTTGCATGGTGCTCTAACTGATGTTGTTGGTGTAAATGTCCAGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGCTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTGGGTTAGCCATTTGCCTCATTCTGTAATGTCATTCTAATAGCTTTTCTTAATTTCTAATCCAAAGACATTTGAATGCTTATTTGCTTCAATAAGTCTTAGTACCCCTAGGATCTATTGGACTTACCATATTATGGCACGTGCTCGGGTCTGCTCTCGTTCTTTAAAAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGCGCCTAAACTCTGCAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAACGGTACGACGTGGTATATTAATGTGTTCTGCAATCCAAATATTTACCTCTTTTACAGATGATTAATGATTCTATTGGATGTGCAATGCAGATATGCTAGTCTTTACTTTTGCCTATGCATTGATCAGGAGGACAATGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGATCGTTACTTCGGCAGTGTAAGTGAATTTAATTTTAGTTCATAAAGTGTTTGAGATCATTCTTTGTGATCTTTTATTCATGTTTGTAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGTATTATTCACTTGCTTATATTAAAGATGCACATTTTATTTAATTTGCATCTCGTTGCCTCTGCTAGACATTTGTGTAAGTAAGCCCGATGCATTTGAATTACTCGTCCTCTTGCTTGTTCGTCAGTAACATTGTCTTAAGCGAACGTCCACATTCATGTCCTTGATATGAAACCTTGAATGCACTGTGTACTTGGTATTATTCACTTGCTTATATTAAAGATGCACATTTTCTTTAATTTACATCTCGTTGCCTCTGCTAGACATTTGTGTAAGTAAGCCCGATGCATTTGAATTACTCGTCCTCTTGCTTGTTCGTCAGTAACATTGTCTTAAGCGAACGTCCACATTCATGTCCTTGATATGAAACCTTGAATGCACTGTGTACTTGGTATTATTCACTTGCTTATATTAAAGATGCACATTTTCTTTAATTTACATCTCGTTGCCTCTGCTAGACATTTGTGTAAGTAAGCCCGATGCATCTGAATTACGTGTCCTCTTGCTTGCTCGCCAGTAACATTGTCTTAAGTGAACGTTCACGTTCACGCCCTTGAGATGAAACCTTGAATGCGTTGTGTACTTTTCTTTCACCTACCGTGTAAGCCCAATGCATCTGAATTACTTGTCCTCTTGCTTGCTCGCCAGTAACATTGTCTTAAGTGAACATTCACGTTCACGTCCTTGATATGAAACTTTGAATGTGTTGTGTACTTTTTTCCTTTTTCTAACATTGAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGCAAGAAAACAGTAGCAAGATTGATAGCTGCACAGGTACTATCTCATTTTATCTTTGGATTACCTTATGATCTCAGTTTGGGTGTGTATGTTAATTGATTTTGGTTTGTAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAGAAATACTTCAAGAGTTTTTGGGGCTTGTGTTTTTTTTTTTTTTTTTTTTTTTTTTGGTAGGGGATGATGATGGGTCAGACTCCCTTCTTTTAGGGGCTTGTTTTTTGTTTGACCTTTCATTCTTTCCTTCTCTCTCGGTTTCATATAAATATATACATAAACATGTTTGAAAACGGACTCTCCACAATGGTATGATATTGTCCACTTTGTGCATAAGCTCTCATGGTTTTGCTTTCGACTTCCTCAAAAAGCCTCATACCAATAGAGATGGTATTCTTTGATTATAAACTCATGATCTGCTTCCTCAAAATGTCTCGTATCAATGGATATAGTATTCTTTGATTATAAACCCATGATCATTCCCTAACCCATGATCATTCCCTATCTCGTATCAATGGAGATAGTATTCTTTGATTATAAACCCATGA

mRNA sequence

ATGATAAGCTTGGCATTAGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCTTCTTCACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGACGTTCCTCGAGAGCATGATCGGGATTCTGTCGGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCTACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCAAAGAGCCGCATCGTGGCGGCGGATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGGGTTCACCGGAGAAGATTTGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGCTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGATCTATTGGACTTACCATATTATGGCACGTGCTCGGGTCTGCTCTCGTTCTTTAAAAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGCGCCTAAACTCTGCAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAACGATATGCTAGTCTTTACTTTTGCCTATGCATTGATCAGGAGGACAATGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGATCGTTACTTCGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGCAAGAAAACAGTAGCAAGATTGATAGCTGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAGAAATACTTCAAGAGTTTTTGGGGCTTGTGTTTTTTTTTTTTTTTTTTTTTTTTTTGGTAGGGGATGATGATGGGTCAGACTCCCTTCTTTTAGGGGCTTGTTTTTTGTTTGACCTTTCATTCTTTCCTTCTCTCTCGGTTTCATATAAATATATACATAAACATGTTTGAAAACGGACTCTCCACAATGGTATGATATTGTCCACTTTGTGCATAAGCTCTCATGGTTTTGCTTTCGACTTCCTCAAAAAGCCTCATACCAATAGAGATGGTATTCTTTGATTATAAACTCATGATCTGCTTCCTCAAAATGTCTCGTATCAATGGATATAGTATTCTTTGATTATAAACCCATGATCATTCCCTAACCCATGATCATTCCCTATCTCGTATCAATGGAGATAGTATTCTTTGATTATAAACCCATGA

Coding sequence (CDS)

ATGATAAGCTTGGCATTAGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCTTCTTCACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGACGTTCCTCGAGAGCATGATCGGGATTCTGTCGGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCTACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCAAAGAGCCGCATCGTGGCGGCGGATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGGGTTCACCGGAGAAGATTTGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGCTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGATCTATTGGACTTACCATATTATGGCACGTGCTCGGGTCTGCTCTCGTTCTTTAAAAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGCGCCTAAACTCTGCAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAACGATATGCTAGTCTTTACTTTTGCCTATGCATTGATCAGGAGGACAATGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGATCGTTACTTCGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGCAAGAAAACAGTAGCAAGATTGATAGCTGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAG

Protein sequence

MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLPVCRFKEPHRGGGSEEDICSVCLAGFTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Homology

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BLAST of Cp4.1LG04g04240 vs. ExPASy Swiss-Prot
Match: O23685 (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 5.1e-76
Identity = 146/180 (81.11%), Postives = 155/180 (86.11%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 149
           +IHFVLL+SRQGKVRLTKWYSPY+QKERS                    KVIRELSG+IL
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERS--------------------KVIRELSGVIL 60

Query: 150 NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 209
           NR PKLCNFVEWRG K VYKRYASLYFC+CIDQEDNELE+LEIIHHYVEILDRYFGSVCE
Sbjct: 61  NRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCE 120

Query: 210 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 269
           LDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 LDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Cp4.1LG04g04240 vs. ExPASy Swiss-Prot
Match: Q8LEZ8 (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.9e-75
Identity = 144/181 (79.56%), Postives = 155/181 (85.64%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 149
           +IHFVLL+SRQGKVRLTKWYSPY+QKERS                    KVIRELSG+IL
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERS--------------------KVIRELSGVIL 60

Query: 150 NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 209
           NR PKLCNF+EWRG K VYKRYASLYFC+CID+ DNELE+LEIIHHYVEILDRYFGSVCE
Sbjct: 61  NRGPKLCNFIEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCE 120

Query: 210 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 269
           LDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 LDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 161

Query: 270 K 271
           K
Sbjct: 181 K 161

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BLAST of Cp4.1LG04g04240 vs. ExPASy Swiss-Prot
Match: B0G185 (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-54
Identity = 103/161 (63.98%), Postives = 126/161 (78.26%), Query Frame = 0


Query: 92  HFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMILNR 151
           HF+LL+SRQGK RLTKWYSP++ KE+S                    +  RE+  M+LNR
Sbjct: 4   HFLLLLSRQGKTRLTKWYSPFTNKEKS--------------------RFTREIGNMVLNR 63

Query: 152 APKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELD 211
            PKLCNF+EW+  K ++KRYASLYF +C D+EDNEL +LEIIHH+VEILDRYFG+VCELD
Sbjct: 64  PPKLCNFLEWKEYKIIFKRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELD 123

Query: 212 LIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVE 253
           LIFNFHKAYYILDEL++AGELQE+SKKTV RLI+ QD+L+E
Sbjct: 124 LIFNFHKAYYILDELIMAGELQETSKKTVLRLISQQDTLLE 144

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BLAST of Cp4.1LG04g04240 vs. ExPASy Swiss-Prot
Match: Q3ZBS3 (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.2e-46
Identity = 95/166 (57.23%), Postives = 114/166 (68.67%), Query Frame = 0


Query: 91  IHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMILN 150
           + F+LL SRQGK+RL KWY P S KE+                    KK+ REL   +L 
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEK--------------------KKITRELVQTVLA 60

Query: 151 RAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCEL 210
           R PK+C+F+EWR LK VYKRYASLYFC  I+ +DNEL  LEIIH YVE+LD+YFGSVCEL
Sbjct: 61  RKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCEL 120

Query: 211 DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE 257
           D+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct: 121 DIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Cp4.1LG04g04240 vs. ExPASy Swiss-Prot
Match: Q9DB50 (AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.2e-46
Identity = 95/166 (57.23%), Postives = 114/166 (68.67%), Query Frame = 0


Query: 91  IHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMILN 150
           + F+LL SRQGK+RL KWY P S KE+                    KK+ REL   +L 
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEK--------------------KKITRELVQTVLA 60

Query: 151 RAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCEL 210
           R PK+C+F+EWR LK VYKRYASLYFC  I+ +DNEL  LEIIH YVE+LD+YFGSVCEL
Sbjct: 61  RKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCEL 120

Query: 211 DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE 257
           D+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct: 121 DIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Cp4.1LG04g04240 vs. NCBI nr
Match: KAG7022803.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 474 bits (1221), Expect = 5.05e-168
Identity = 244/270 (90.37%), Postives = 246/270 (91.11%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60
           MISLALGRGPTCVATIV FTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP
Sbjct: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60

Query: 61  VCRFKEPHRGGGSEEDICSVCLAGFTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKD 120
           VCRF+E HRG  SEEDICSVCLAG+TGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSK 
Sbjct: 61  VCRFEELHRGSASEEDICSVCLAGYTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSK- 120

Query: 121 LLDLPYYGTCSGLLSFFKKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCI 180
                              VIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCI
Sbjct: 121 -------------------VIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCI 180

Query: 181 DQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTV 240
           DQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTV
Sbjct: 181 DQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTV 240

Query: 241 ARLIAAQDSLVETAKEQASSISNIIAQATK 270
           ARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 241 ARLIAAQDSLVETAKEQASSISNIIAQATK 250

[Close]

BLAST of Cp4.1LG04g04240 vs. NCBI nr
Match: KAG6589096.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 472 bits (1214), Expect = 6.57e-167
Identity = 246/273 (90.11%), Postives = 246/273 (90.11%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60
           MISLALGRGPTCVATIV FTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP
Sbjct: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60

Query: 61  VCRFKEPHRGGGSEEDICSVCLAGFTGEDL---IHFVLLISRQGKVRLTKWYSPYSQKER 120
           VCRFKE HRG  SEEDICSVCLAGFTGEDL   IHFVLLISRQGKVRLTKWYSPYSQKER
Sbjct: 61  VCRFKELHRGSASEEDICSVCLAGFTGEDLTKMIHFVLLISRQGKVRLTKWYSPYSQKER 120

Query: 121 SKDLLDLPYYGTCSGLLSFFKKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFC 180
           SK                    VIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFC
Sbjct: 121 SK--------------------VIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFC 180

Query: 181 LCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSK 240
           LCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSK
Sbjct: 181 LCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSK 240

Query: 241 KTVARLIAAQDSLVETAKEQASSISNIIAQATK 270
           KTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 241 KTVARLIAAQDSLVETAKEQASSISNIIAQATK 253

[Close]

BLAST of Cp4.1LG04g04240 vs. NCBI nr
Match: KAE8645705.1 (hypothetical protein Csa_020389 [Cucumis sativus])

HSP 1 Score: 400 bits (1029), Expect = 4.28e-138
Identity = 215/277 (77.62%), Postives = 223/277 (80.51%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60
           MI +AL RG   +ATIVF TCVWIPL QLK  + SM  ILSGRT Q LT   LPCEVKL 
Sbjct: 38  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 97

Query: 61  VCRFKEPHRGGGSEEDICSVCLAGFTGEDL-------IHFVLLISRQGKVRLTKWYSPYS 120
           VCRF+E  R  GSEE+ICSVCL  FT E L       IHFVLLISRQGKVRLTKWYSPY+
Sbjct: 98  VCRFEELQRAVGSEEEICSVCLTEFTREHLLKGYDFKIHFVLLISRQGKVRLTKWYSPYT 157

Query: 121 QKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYAS 180
           QKERSK                    VIRELSGMILNR PKLCNFVEWRGLKAVYKRYAS
Sbjct: 158 QKERSK--------------------VIRELSGMILNRGPKLCNFVEWRGLKAVYKRYAS 217

Query: 181 LYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQ 240
           LYFC+CIDQEDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQ
Sbjct: 218 LYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQ 277

Query: 241 ESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 270
           ESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 278 ESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 294

[Close]

BLAST of Cp4.1LG04g04240 vs. NCBI nr
Match: KAA0050549.1 (AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa])

HSP 1 Score: 392 bits (1006), Expect = 1.86e-135
Identity = 206/257 (80.16%), Postives = 215/257 (83.66%), Query Frame = 0


Query: 14  ATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLPVCRFKEPHRGGGS 73
           AT+VF TCVWIPL QLK  + SM  ILSGRT   LT   +PCEVKL VCRF+E  RG GS
Sbjct: 4   ATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--VPCEVKLLVCRFEELQRGVGS 63

Query: 74  EEDICSVCLAGFTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGL 133
           EE+ICS+CL  FT E LIHFVLLISRQGKVRLTKWYSPYSQKERSK              
Sbjct: 64  EEEICSICLTEFTREHLIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------- 123

Query: 134 LSFFKKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEII 193
                 VIRELSGMILNR PKLCNFVEWRGLKAVYKRYASLYFC+CIDQ+DNELE+LEII
Sbjct: 124 ------VIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEII 183

Query: 194 HHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET 253
           HHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET
Sbjct: 184 HHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET 238

Query: 254 AKEQASSISNIIAQATK 270
           AKEQASSISNIIAQATK
Sbjct: 244 AKEQASSISNIIAQATK 238

[Close]

BLAST of Cp4.1LG04g04240 vs. NCBI nr
Match: XP_022989479.1 (AP-1 complex subunit sigma-1 isoform X1 [Cucurbita maxima] >XP_023529798.1 AP-1 complex subunit sigma-1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358 bits (920), Expect = 3.06e-123
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 149
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 60

Query: 150 NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 209
           NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE
Sbjct: 61  NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 120

Query: 210 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 269
           LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT
Sbjct: 121 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 180

[Close]

BLAST of Cp4.1LG04g04240 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 9.00e-136
Identity = 206/257 (80.16%), Postives = 215/257 (83.66%), Query Frame = 0


Query: 14  ATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLPVCRFKEPHRGGGS 73
           AT+VF TCVWIPL QLK  + SM  ILSGRT   LT   +PCEVKL VCRF+E  RG GS
Sbjct: 4   ATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--VPCEVKLLVCRFEELQRGVGS 63

Query: 74  EEDICSVCLAGFTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGL 133
           EE+ICS+CL  FT E LIHFVLLISRQGKVRLTKWYSPYSQKERSK              
Sbjct: 64  EEEICSICLTEFTREHLIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------- 123

Query: 134 LSFFKKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEII 193
                 VIRELSGMILNR PKLCNFVEWRGLKAVYKRYASLYFC+CIDQ+DNELE+LEII
Sbjct: 124 ------VIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEII 183

Query: 194 HHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET 253
           HHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET
Sbjct: 184 HHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET 238

Query: 254 AKEQASSISNIIAQATK 270
           AKEQASSISNIIAQATK
Sbjct: 244 AKEQASSISNIIAQATK 238

[Close]

BLAST of Cp4.1LG04g04240 vs. ExPASy TrEMBL
Match: A0A6J1JPF9 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111486525 PE=3 SV=1)

HSP 1 Score: 358 bits (920), Expect = 1.48e-123
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 149
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 60

Query: 150 NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 209
           NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE
Sbjct: 61  NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 120

Query: 210 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 269
           LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT
Sbjct: 121 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 180

[Close]

BLAST of Cp4.1LG04g04240 vs. ExPASy TrEMBL
Match: A0A6J1EK11 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111435057 PE=3 SV=1)

HSP 1 Score: 357 bits (917), Expect = 4.24e-123
Identity = 179/181 (98.90%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 149
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKV+RELSGMIL
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVMRELSGMIL 60

Query: 150 NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 209
           NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE
Sbjct: 61  NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 120

Query: 210 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 269
           LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT
Sbjct: 121 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 180

[Close]

BLAST of Cp4.1LG04g04240 vs. ExPASy TrEMBL
Match: A0A7J6EPV4 (Clat_adaptor_s domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_000501 PE=3 SV=1)

HSP 1 Score: 322 bits (824), Expect = 4.37e-107
Identity = 184/328 (56.10%), Postives = 208/328 (63.41%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTY-------QQLTMELL 60
           MI L + +   CV TI+F+TC+WIPL QLK   +S+IG+L    +        ++     
Sbjct: 1   MICLVVSQSRFCVVTIIFYTCIWIPLLQLK---KSLIGLLKNIIFFNFDQNDYEINNHAN 60

Query: 61  PCEVKLPVCRF------------KEPHRGGGSEEDICSVCLAGFTGED------------ 120
             +  LP+ R+            +E       EE +CS+CL  F  ED            
Sbjct: 61  AVQPWLPISRYVDLKLKSQNKKVEEEEEEEEEEEALCSICLVDFEKEDVLVCGVELWWDD 120

Query: 121 ---------------------------LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLL 180
                                      +IHFVLLISRQGKVRLTKWYSPYSQKER+K   
Sbjct: 121 VYDKNNVVQFEKGKPSSSSRSLQNLEEMIHFVLLISRQGKVRLTKWYSPYSQKERTK--- 180

Query: 181 DLPYYGTCSGLLSFFKKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQ 240
                            V+RELSG+IL R PKLCNFVEWRG K VYKRYASLYFC+CIDQ
Sbjct: 181 -----------------VLRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQ 240

Query: 241 EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR 270
           EDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR
Sbjct: 241 EDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR 300

[Close]

BLAST of Cp4.1LG04g04240 vs. ExPASy TrEMBL
Match: A0A6J1JMH4 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111486525 PE=3 SV=1)

HSP 1 Score: 305 bits (780), Expect = 1.51e-102
Identity = 160/181 (88.40%), Postives = 161/181 (88.95%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 149
           +IHFVLLISRQGKVRLTKWYSPYSQKERSK                    VIRELSGMIL
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSK--------------------VIRELSGMIL 60

Query: 150 NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 209
           NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE
Sbjct: 61  NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 120

Query: 210 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 269
           LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT
Sbjct: 121 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 161

[Close]

BLAST of Cp4.1LG04g04240 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 285.8 bits (730), Expect = 3.6e-77
Identity = 146/180 (81.11%), Postives = 155/180 (86.11%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 149
           +IHFVLL+SRQGKVRLTKWYSPY+QKERS                    KVIRELSG+IL
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERS--------------------KVIRELSGVIL 60

Query: 150 NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 209
           NR PKLCNFVEWRG K VYKRYASLYFC+CIDQEDNELE+LEIIHHYVEILDRYFGSVCE
Sbjct: 61  NRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCE 120

Query: 210 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 269
           LDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 LDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Cp4.1LG04g04240 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 283.9 bits (725), Expect = 1.4e-76
Identity = 144/181 (79.56%), Postives = 155/181 (85.64%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 149
           +IHFVLL+SRQGKVRLTKWYSPY+QKERS                    KVIRELSG+IL
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERS--------------------KVIRELSGVIL 60

Query: 150 NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 209
           NR PKLCNF+EWRG K VYKRYASLYFC+CID+ DNELE+LEIIHHYVEILDRYFGSVCE
Sbjct: 61  NRGPKLCNFIEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCE 120

Query: 210 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 269
           LDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 LDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 161

Query: 270 K 271
           K
Sbjct: 181 K 161

[Close]

BLAST of Cp4.1LG04g04240 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 206.1 bits (523), Expect = 3.6e-53
Identity = 100/129 (77.52%), Postives = 106/129 (82.17%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 149
           +IHFVLL+SRQGKVRLTKWYSPY+QKERS                    KVIRELSG+IL
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERS--------------------KVIRELSGVIL 60

Query: 150 NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 209
           NR PKLCNFVEWRG K VYKRYASLYFC+CIDQEDNELE+LEIIHHYVEILDRYFGSVCE
Sbjct: 61  NRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCE 109

Query: 210 LDLIFNFHK 219
           LDLIFNFHK
Sbjct: 121 LDLIFNFHK 109

[Close]

BLAST of Cp4.1LG04g04240 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-34
Identity = 73/161 (45.34%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMIL 149
           +I F+LL +RQGK RL K+Y P  + E+                     KV  E+  +++
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEK--------------------HKVEYEVHRLVV 60

Query: 150 NRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCE 209
           NR  K  NFVE+R  K +Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCE
Sbjct: 61  NRDAKFTNFVEFRTHKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCE 120

Query: 210 LDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSL 251
           LDL+FNFHK Y ILDE ++AGELQE+SK+ +   ++  + L
Sbjct: 121 LDLVFNFHKVYLILDEFILAGELQETSKRAIIERMSELEKL 141

[Close]

BLAST of Cp4.1LG04g04240 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 3.5e-24
Identity = 57/158 (36.08%), Postives = 95/158 (60.13%), Query Frame = 0


Query: 91  IHFVLLISRQGKVRLTKWYSPYSQKERSKDLLDLPYYGTCSGLLSFFKKVIRELSGMILN 150
           I F+L++++QG+ RL ++Y   + +ER                    + +  E+    L 
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEER--------------------RALEGEIVRKCLA 62

Query: 151 RAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCEL 210
           R  + C+FVE R  K VY+RYASL+F + +D ++NEL ILE IH  VE +D++FG+VCEL
Sbjct: 63  RNDQQCSFVEHRNYKIVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCEL 122

Query: 211 DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQD 249
           D++F+  KA+++L+E+++ G + E+SK  +   I   D
Sbjct: 123 DIMFHLEKAHFMLEEMVMNGCIVETSKANILSPIQLMD 140

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g04240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23685	5.1e-76	81.11	AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=...	[more]
Q8LEZ8	1.9e-75	79.56	AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=...	[more]
B0G185	1.1e-54	63.98	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ...	[more]
Q3ZBS3	3.2e-46	57.23	AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1	[more]
Q9DB50	3.2e-46	57.23	AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1	[more]

BLAST of Cp4.1LG04g04240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022803.1	5.05e-168	90.37	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6589096.1	6.57e-167	90.11	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAE8645705.1	4.28e-138	77.62	hypothetical protein Csa_020389 [Cucumis sativus]	[more]
KAA0050549.1	1.86e-135	80.16	AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex...	[more]
XP_022989479.1	3.06e-123	99.45	AP-1 complex subunit sigma-1 isoform X1 [Cucurbita maxima] >XP_023529798.1 AP-1 ...	[more]

BLAST of Cp4.1LG04g04240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5G1	9.00e-136	80.16	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1JPF9	1.48e-123	99.45	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111486525 PE=3 SV=1	[more]
A0A6J1EK11	4.24e-123	98.90	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111435057 PE=3 SV=1	[more]
A0A7J6EPV4	4.37e-107	56.10	Clat_adaptor_s domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_000...	[more]
A0A6J1JMH4	1.51e-102	88.40	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111486525 PE=3 SV=1	[more]

BLAST of Cp4.1LG04g04240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35410.2	3.6e-77	81.11	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	1.4e-76	79.56	associated protein 19	[more]
AT4G35410.1	3.6e-53	77.52	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	1.3e-34	45.34	SNARE-like superfamily protein	[more]
AT2G19790.1	3.5e-24	36.08	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 251..270
None	No IPR available	GENE3D	3.30.450.60		coord: 90..266 e-value: 6.7E-61 score: 206.7
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 90..124
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 138..260
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 138..249 e-value: 7.4E-41 score: 139.4 coord: 91..121 e-value: 7.8E-6 score: 25.9
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 90..124
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 138..260
IPR044733	AP-1 complex subunit sigma	CDD	cd14831	AP1_sigma	coord: 92..252 e-value: 8.96351E-98 score: 280.984
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 91..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g04240.1	Cp4.1LG04g04240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030121	AP-1 adaptor complex
molecular_function	GO:0035615	clathrin adaptor activity