Cp4.1LG04g03900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g03900
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG04: 6918406 .. 6919026 (-)
RNA-Seq ExpressionCp4.1LG04g03900
SyntenyCp4.1LG04g03900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAACCAATCACTCAAGTTCATCTCAAACCCACCATAGTTGTTGTTGAGTATAGTGATAAGAGATATCAACTAAAATGAGTGGTCGGAAGGGTTCAGTTCTTTTGGCTTTCTTGCTCTTCTTTTTCCTCTTCTCCTCCGAGCTGGCTGCTGCCCGGAAGCTGATGATGGCCGGAAACAACGGTGAGGTTCTTACATATTGTGCAGCCTACCGTTTTAGTTTTGCTCAAGTATATATAGTGAAAGCTTAAATTTGTTTGTGGATGCAGCAGCGGCCATACATGAAGACCCCACCGTTTTCAGCAGCCCCGCCACACAAAACCCCGACGAGCAAAATTGCTATTGTTATAGTGATTGCAACTCTTGCCTAACCTCGGTCTGCGATCCTTATACACAAGACTGCCCTCCGCGGAACTGAAGTGGACCCTAAGATCAAACACCATGGAAACTAAATAAACTAACCCACACCTACCTGGGTTTTTAATTACTATCTATCTTACCTTTGTTGTCTGTATTGAATCCTATTTATATGGTTATAAGTTTGGGAGATTCATGTTTTATGCCGATGATGCATGGGTATGATTCGTAACTCGATCAATAGTACATGTATGTCATGCTCTG

mRNA sequence

AGGAAACCAATCACTCAAGTTCATCTCAAACCCACCATAGTTGTTGTTGAGTATAGTGATAAGAGATATCAACTAAAATGAGTGGTCGGAAGGGTTCAGTTCTTTTGGCTTTCTTGCTCTTCTTTTTCCTCTTCTCCTCCGAGCTGGCTGCTGCCCGGAAGCTGATGATGGCCGGAAACAACGCAGCGGCCATACATGAAGACCCCACCGTTTTCAGCAGCCCCGCCACACAAAACCCCGACGAGCAAAATTGCTATTGTTATAGTGATTGCAACTCTTGCCTAACCTCGGTCTGCGATCCTTATACACAAGACTGCCCTCCGCGGAACTGAAGTGGACCCTAAGATCAAACACCATGGAAACTAAATAAACTAACCCACACCTACCTGGGTTTTTAATTACTATCTATCTTACCTTTGTTGTCTGTATTGAATCCTATTTATATGGTTATAAGTTTGGGAGATTCATGTTTTATGCCGATGATGCATGGGTATGATTCGTAACTCGATCAATAGTACATGTATGTCATGCTCTG

Coding sequence (CDS)

ATGAGTGGTCGGAAGGGTTCAGTTCTTTTGGCTTTCTTGCTCTTCTTTTTCCTCTTCTCCTCCGAGCTGGCTGCTGCCCGGAAGCTGATGATGGCCGGAAACAACGCAGCGGCCATACATGAAGACCCCACCGTTTTCAGCAGCCCCGCCACACAAAACCCCGACGAGCAAAATTGCTATTGTTATAGTGATTGCAACTCTTGCCTAACCTCGGTCTGCGATCCTTATACACAAGACTGCCCTCCGCGGAACTGA

Protein sequence

MSGRKGSVLLAFLLFFFLFSSELAAARKLMMAGNNAAAIHEDPTVFSSPATQNPDEQNCYCYSDCNSCLTSVCDPYTQDCPPRN
Homology
[Close]
BLAST of Cp4.1LG04g03900 vs. NCBI nr
Match: KAG6589129.1 (hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114 bits (284), Expect = 7.35e-31
Identity = 60/87 (68.97%), Postives = 65/87 (74.71%), Query Frame = 0 

Query: 1  MSGRKGSVLLAFLLFFFLFSSELAAARKLMMAGNNAAAIHEDPTVFSSPATQNPDEQNCY 60
          MSG KGSVLLAFLLFFFLFSSELAAARKLM+AGNNAA +HE  T F +P TQ  D   CY
Sbjct: 1  MSGGKGSVLLAFLLFFFLFSSELAAARKLMVAGNNAAVMHEGRTTFVTPRTQYSDRPPCY 60

Query: 61 C---YSDCNSCLTSVCDPYTQDCPPRN 84
              Y DC S    VCDPYTQ+CPP+N
Sbjct: 61 RTSPYEDCPSFQPPVCDPYTQNCPPKN 87

[Close]
BLAST of Cp4.1LG04g03900 vs. NCBI nr
Match: KAG6589128.1 (hypothetical protein SDJN03_17693, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 1.85e-17
Identity = 48/85 (56.47%), Postives = 54/85 (63.53%), Query Frame = 0 

Query: 1  MSGRKGSVLLAFLLFFFLFSSELAAARKLMMAGNNAAAIHEDPTVFSSPATQNPDEQNCY 60
          MSGRK SV LAFLLFFFL SSEL AARKLM+AG NAA          +P TQ  D  + Y
Sbjct: 1  MSGRKVSVFLAFLLFFFLVSSELGAARKLMVAGKNAAV---------NPRTQ--DSYDPY 60

Query: 61 C-YSDCNSCLTSVCDPYTQDCPPRN 84
          C  +   SCL   CDPY + CPP+N
Sbjct: 61 CDRNSYRSCLPQACDPYVEYCPPKN 74

[Close]
BLAST of Cp4.1LG04g03900 vs. NCBI nr
Match: KAG6589127.1 (hypothetical protein SDJN03_17692, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.0 bits (123), Expect = 2.99e-06
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 1  MSGRKGSVLLAFLLFFFLFSSELAAARKLMMAGNN 35
          MSG KG V LA LLFFFL SSEL AARKLM+AGNN
Sbjct: 1  MSGGKGWVFLALLLFFFLVSSELGAARKLMVAGNN 35

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03900 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03900 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589129.17.35e-3168.97hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589128.11.85e-1756.47hypothetical protein SDJN03_17693, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589127.12.99e-0680.00hypothetical protein SDJN03_17692, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG04g03900 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03900 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03900.1Cp4.1LG04g03900.1mRNA