Cp4.1LG04g03600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g03600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ThiF domain-containing protein
Location	Cp4.1LG04: 7148805 .. 7149676 (-)
RNA-Seq Expression	Cp4.1LG04g03600
Synteny	Cp4.1LG04g03600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACCACTTTTCCCGCCTGTCCCCGCTCAATCCTCCACCTCCCGCCCACCCCACACTCCATAAATCCCCAAACCCCAATCTCCAATTTTCCTCATCCCAATCCCCTTCTTCCCTTCCAATTTCCGGCAACATGAATCGAAGATCCAGAGCGTTTTCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCTGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGCGTCAATTTGGTATCTCAGATCTACTCCACTCGTTCCTCATCGCTTTCGCCGCCGACTGCACCGATCGACTCCGCTTTGCTTCAGGTGAACATTGTTGATGCTTCTCCTTGCTTTGCTGGGAGGGTGTACGGTCCACTCTGCTTGCAGAGGAAGAAACTTTTGGCTGCTAAGTCGTTGTGGTTTCTTAGTTCTAGTCCGACGAATTTGACTCCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGAATAGTGTTGATGTGTCGACGAATGGAATAGTTTTGAACCTTGTGAATCGATGTTTTCGTTGTGAATTTCATATCAATGTGTAATACATGATACCTTTTGTAGGTACTCGTTGATGAGTTCTGTGAAAATTTTTCTTGATATTAACGGAATTGATATAATAAGATCTCTCATATTTTCGATCTATTGTGCTTGAGACTTCAAGTAGGGCTTTTTCTACTTAATTTTTGGTCAATATATTTGGGATTCTATTGAACTACTCTAATCTAGGTCTCATTTTGGACCTTAAAGCTTGGGGATTATGTTGAACTTCTGACCGAACTTCACATTGACTTCAAACTGAACTCAACTCTAGTCTACGAC

mRNA sequence

TCCACCACTTTTCCCGCCTGTCCCCGCTCAATCCTCCACCTCCCGCCCACCCCACACTCCATAAATCCCCAAACCCCAATCTCCAATTTTCCTCATCCCAATCCCCTTCTTCCCTTCCAATTTCCGGCAACATGAATCGAAGATCCAGAGCGTTTTCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCTGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGCGTCAATTTGGTATCTCAGATCTACTCCACTCGTTCCTCATCGCTTTCGCCGCCGACTGCACCGATCGACTCCGCTTTGCTTCAGGTCTCATTTTGGACCTTAAAGCTTGGGGATTATGTTGAACTTCTGACCGAACTTCACATTGACTTCAAACTGAACTCAACTCTAGTCTACGAC

Coding sequence (CDS)

ATGAATCGAAGATCCAGAGCGTTTTCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCTGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGCGTCAATTTGGTATCTCAGATCTACTCCACTCGTTCCTCATCGCTTTCGCCGCCGACTGCACCGATCGACTCCGCTTTGCTTCAGGTCTCATTTTGGACCTTAAAGCTTGGGGATTATGTTGAACTTCTGACCGAACTTCACATTGACTTCAAACTGAACTCAACTCTAGTCTACGAC

Protein sequence

MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPPTAPIDSALLQVSFWTLKLGDYVELLTELHIDFKLNSTLVYD

Homology

[Close]

BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match: KAG6589164.1 (hypothetical protein SDJN03_17729, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (463), Expect = 1.56e-57
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSRAF RSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNL+SQIYSTRSSSLSPP
Sbjct: 1  MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLISQIYSTRSSSLSPP 60

Query: 61 TAPIDSALLQVSFWTLKLGDYVELLTELHIDFKLNST 97
          TAPIDSALLQVSFWTLKLGDYVELLT+LHIDFKLNST
Sbjct: 61 TAPIDSALLQVSFWTLKLGDYVELLTKLHIDFKLNST 97

[Close]

BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match: XP_023530330.1 (uncharacterized protein LOC111792933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135 bits (340), Expect = 1.37e-38
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP
Sbjct: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60

Query: 61 TAPIDSALLQVS 72
          TAPIDSALLQV+
Sbjct: 61 TAPIDSALLQVN 72

[Close]

BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match: XP_022989505.1 (uncharacterized protein LOC111486563 [Cucurbita maxima])

HSP 1 Score: 133 bits (335), Expect = 7.91e-38
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSRAF RSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP
Sbjct: 1  MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60

Query: 61 TAPIDSALLQVS 72
          TAPIDSALLQV+
Sbjct: 61 TAPIDSALLQVN 72

[Close]

BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match: KAG7022864.1 (hypothetical protein SDJN02_16600, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133 bits (334), Expect = 1.12e-37
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSRAF RSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNL+SQIYSTRSSSLSPP
Sbjct: 1  MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLISQIYSTRSSSLSPP 60

Query: 61 TAPIDSALLQVS 72
          TAPIDSALLQV+
Sbjct: 61 TAPIDSALLQVN 72

[Close]

BLAST of Cp4.1LG04g03600 vs. NCBI nr
Match: XP_022930695.1 (uncharacterized protein LOC111437092 [Cucurbita moschata])

HSP 1 Score: 131 bits (329), Expect = 6.47e-37
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSRAF RSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTR SSLSPP
Sbjct: 1  MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP 60

Query: 61 TAPIDSALLQVS 72
          TAPIDSALLQV+
Sbjct: 61 TAPIDSALLQVN 72

[Close]

BLAST of Cp4.1LG04g03600 vs. ExPASy TrEMBL
Match: A0A6J1JMJ5 (uncharacterized protein LOC111486563 OS=Cucurbita maxima OX=3661 GN=LOC111486563 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 3.83e-38
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSRAF RSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP
Sbjct: 1  MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60

Query: 61 TAPIDSALLQVS 72
          TAPIDSALLQV+
Sbjct: 61 TAPIDSALLQVN 72

[Close]

BLAST of Cp4.1LG04g03600 vs. ExPASy TrEMBL
Match: A0A6J1EXJ2 (uncharacterized protein LOC111437092 OS=Cucurbita moschata OX=3662 GN=LOC111437092 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 3.13e-37
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSRAF RSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTR SSLSPP
Sbjct: 1  MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP 60

Query: 61 TAPIDSALLQVS 72
          TAPIDSALLQV+
Sbjct: 61 TAPIDSALLQVN 72

[Close]

BLAST of Cp4.1LG04g03600 vs. ExPASy TrEMBL
Match: A0A6J1GLZ8 (uncharacterized protein LOC111455201 OS=Cucurbita moschata OX=3662 GN=LOC111455201 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 1.45e-30
Identity = 63/72 (87.50%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSR   RS  SHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSP 
Sbjct: 1  MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPS 60

Query: 61 TAPIDSALLQVS 72
          TAPI S LLQV+
Sbjct: 61 TAPIGSGLLQVN 69

[Close]

BLAST of Cp4.1LG04g03600 vs. ExPASy TrEMBL
Match: A0A6J1C424 (uncharacterized protein LOC111007734 OS=Momordica charantia OX=3673 GN=LOC111007734 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 1.29e-29
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSR F RS  S SE+FHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS RSS LSPP
Sbjct: 1  MNRRSRTFHRSGNSRSESFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSNRSS-LSPP 60

Query: 61 TAPIDSALLQVS 72
          +AP+DS LLQV+
Sbjct: 61 SAPLDSGLLQVN 71

[Close]

BLAST of Cp4.1LG04g03600 vs. ExPASy TrEMBL
Match: A0A6J1HVZ0 (uncharacterized protein LOC111468346 OS=Cucurbita maxima OX=3661 GN=LOC111468346 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 1.58e-27
Identity = 59/72 (81.94%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MNRRSRAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60
          MNRRSR   RS  SHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTR SSLS  
Sbjct: 1  MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRPSSLSSS 60

Query: 61 TAPIDSALLQVS 72
          T P+ S LLQV+
Sbjct: 61 TTPMGSGLLQVN 69

[Close]

BLAST of Cp4.1LG04g03600 vs. TAIR 10
Match: AT5G54970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 5.2e-05
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 9  SRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPPTAPIDSAL 68
          S+S    S+ FH+YLKPGALAQIRNSR+ AR +  +LVS+   +  S L  P +P ++++
Sbjct: 5  SKSPARRSDGFHRYLKPGALAQIRNSRINAR-STTSLVSR---SSLSQLVDPISPSENSV 60

[Close]

BLAST of Cp4.1LG04g03600 vs. TAIR 10
Match: AT4G26960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54970.1); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 5.8e-04
Identity = 26/89 (29.21%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 6   RAFSRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPPTAPID 65
           +  SRS    ++ FH+Y+KPGALAQIRN    AR N       +  + S  + PP++  +
Sbjct: 31  KGISRSPVRRNDGFHRYMKPGALAQIRN----ARINNARSNFPLTRSLSDPVDPPSSSSE 90

Query: 66  SALLQVSFWTLKLGDYVELLTELHIDFKL 95
           S +      T+ +     LL++++  +++
Sbjct: 91  SPIAATP-QTITMDQMPHLLSKIYGPYRI 114

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g03600 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g03600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589164.1	1.56e-57	96.91	hypothetical protein SDJN03_17729, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023530330.1	1.37e-38	98.61	uncharacterized protein LOC111792933 [Cucurbita pepo subsp. pepo]	[more]
XP_022989505.1	7.91e-38	97.22	uncharacterized protein LOC111486563 [Cucurbita maxima]	[more]
KAG7022864.1	1.12e-37	95.83	hypothetical protein SDJN02_16600, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022930695.1	6.47e-37	95.83	uncharacterized protein LOC111437092 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG04g03600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMJ5	3.83e-38	97.22	uncharacterized protein LOC111486563 OS=Cucurbita maxima OX=3661 GN=LOC111486563...	[more]
A0A6J1EXJ2	3.13e-37	95.83	uncharacterized protein LOC111437092 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1GLZ8	1.45e-30	87.50	uncharacterized protein LOC111455201 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1C424	1.29e-29	83.33	uncharacterized protein LOC111007734 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1HVZ0	1.58e-27	81.94	uncharacterized protein LOC111468346 OS=Cucurbita maxima OX=3661 GN=LOC111468346...	[more]

BLAST of Cp4.1LG04g03600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54970.1	5.2e-05	46.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G26960.1	5.8e-04	29.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35495:SF10	SUBFAMILY NOT NAMED	coord: 1..57
None	No IPR available	PANTHER	PTHR35495	OS06G0679600 PROTEIN	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g03600.1	Cp4.1LG04g03600.1	mRNA