Cp4.1LG04g03560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g03560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptioncysteine-rich repeat secretory protein 38-like
LocationCp4.1LG04: 7260409 .. 7261666 (+)
RNA-Seq ExpressionCp4.1LG04g03560
SyntenyCp4.1LG04g03560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTTTTATTGTTGGATATAGATAAAAGAAAATATATTTGTTACCTAAATATTGGATACATAAGCAAAATACTCTTACAATTTTCTCTCTTATACATCCAACCGTGCACTTTTAAATTGTGGTGGTAGTTTTATCGAATAATTTTTTCAAACAAGTGGGATGTTATTAATGCAAGCAGGTCGAGACAATTAGGTAAAACGAGACCTTTACGTCACCTAATTGCCTTCACCTCAACATGCTTCGGGCTTGGGGTCAGACACGTATCTGTTGGCTGTTGAGTTGTATGGAAAGTCGTATGATTTGACTCGTAACCATAATTTTTGAATGATATCTATATATTGTGGTGATTACATTCAACAATTTTTTGTTAATACAAAAATTAAGAATACTCGATATTTTTTAAATTTTCTTCTAGAAGGTTGACTTAGCTTGGTTTGAACTTGATTGCCATCAACACTAACACAACTAAGAAAATTATGGAGGTCATATTAATTCATGAAAATGACCCCTATTCGGGGGACATCAATTATTAAAGTCAACAATTTCAACTCCATTATTTGACTATACACACTTGTTGATTTTTTTTTTTTTTTAAGTACAAATCAAGTCAACAAGTCGACTCTATACTGTGGTGACGGTTCACCCACCGATTACGAGAACTGCATCACCACAACTAGATAAGTGATCCAACGACATCTTCCCAAAAAACGAGGTATGATTTTTGTCACTTGAAATATTCTAATACCCAAACAAAGATTCCTAGGTAGTTTAATGGGCTAAGTCAAGCTTCGACAGCGACACGCGACACCGTGAATAACATCTACACTTCCAACTTGTAACTACTCGACCAATAGTGTCCCATCCTCTAGCTTCGACCTTAGCTCGACAAGGGCGAAAGTTGACAAAACCAAGTTAATGGCCTAGTTCTATGTCACACGGACATCTCACCACTGGAAGAGATCCAACATCGATTCGGTTACAAGAAAGACTCCAACATATGGTACAATTCCGGCCAAATTCTTTGGGAAGAACCAAAATGGAGGGTTTAGATTCAACTTGAGGAACGTCCAAGAGGTGGATGATCCAACGTCGTTTATAGACCAAGTAAAGAACTTACTTGATGATGCCATTGTTGAGCTTCCATATTGGTGTGCAAATGGAGCTGAAGTTGGAGGAAGGGTGGTCGGTGGGAGATGTAACTTTTTTGTCGAAGTTGATCAAACTTCGATCCCACACGCCACGATTCCCACTTGA

mRNA sequence

ATGGTACAAATCAAGTCAACAAGTCGACTCTATACTGTGGTGACGTTCTATGTCACACGGACATCTCACCACTGGAAGAGATCCAACATCGATTCGGTTACAAGAAAGACTCCAACATATGGTACAATTCCGGCCAAATTCTTTGGGAAGAACCAAAATGGAGGGTTTAGATTCAACTTGAGGAACGTCCAAGAGGTGGATGATCCAACGTCGTTTATAGACCAAGTAAAGAACTTACTTGATGATGCCATTGTTGAGCTTCCATATTGGTGTGCAAATGGAGCTGAAGTTGGAGGAAGGGTGGTCGGTGGGAGATGTAACTTTTTTGTCGAAGTTGATCAAACTTCGATCCCACACGCCACGATTCCCACTTGA

Coding sequence (CDS)

ATGGTACAAATCAAGTCAACAAGTCGACTCTATACTGTGGTGACGTTCTATGTCACACGGACATCTCACCACTGGAAGAGATCCAACATCGATTCGGTTACAAGAAAGACTCCAACATATGGTACAATTCCGGCCAAATTCTTTGGGAAGAACCAAAATGGAGGGTTTAGATTCAACTTGAGGAACGTCCAAGAGGTGGATGATCCAACGTCGTTTATAGACCAAGTAAAGAACTTACTTGATGATGCCATTGTTGAGCTTCCATATTGGTGTGCAAATGGAGCTGAAGTTGGAGGAAGGGTGGTCGGTGGGAGATGTAACTTTTTTGTCGAAGTTGATCAAACTTCGATCCCACACGCCACGATTCCCACTTGA

Protein sequence

MVQIKSTSRLYTVVTFYVTRTSHHWKRSNIDSVTRKTPTYGTIPAKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLLDDAIVELPYWCANGAEVGGRVVGGRCNFFVEVDQTSIPHATIPT
Homology
[Close]
BLAST of Cp4.1LG04g03560 vs. NCBI nr
Match: KAG6589182.1 (Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135 bits (341), Expect = 1.34e-38
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLLDDAIVELPYWCANGAEVGGRVVGG 104
           AKFFGKNQNGGFRF LRNVQEVDDPTSFIDQVKNLLDDAI ELPYWCANGAEVGGRVVGG
Sbjct: 36  AKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQVKNLLDDAIAELPYWCANGAEVGGRVVGG 95

Query: 105 RCNFFVE 111
            CNFF+ 
Sbjct: 96  SCNFFLS 102

[Close]
BLAST of Cp4.1LG04g03560 vs. NCBI nr
Match: KAG7022882.1 (Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (341), Expect = 5.53e-38
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLLDDAIVELPYWCANGAEVGGRVVGG 104
           AKFFGKNQNGGFRF LRNVQEVDDPTSFIDQVKNLLDDAI ELPYWCANGAEVGGRVVGG
Sbjct: 83  AKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQVKNLLDDAIAELPYWCANGAEVGGRVVGG 142

Query: 105 RCNFFVE 111
            CNFF+ 
Sbjct: 143 SCNFFLS 149

[Close]
BLAST of Cp4.1LG04g03560 vs. NCBI nr
Match: XP_023554592.1 (cysteine-rich repeat secretory protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 1.90e-21
Identity = 55/113 (48.67%), Postives = 59/113 (52.21%), Query Frame = 0 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLL------------------------ 104
           AKFFGKNQNGGFRF LRNV++ DDPTSF +QVKNLL                        
Sbjct: 130 AKFFGKNQNGGFRFYLRNVRDADDPTSFGEQVKNLLSGLSEKVKTSRNLYAIGELEIGGS 189

Query: 105 ----------------------DDAIVELPYWCANGAEVGGRVVGGRCNFFVE 111
                                 DDAI ELPY CANGA+VGGRVVGG CNF  E
Sbjct: 190 KKVYGLVQCTRDLWTADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 242

[Close]
BLAST of Cp4.1LG04g03560 vs. NCBI nr
Match: KAG7011922.1 (Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 1.90e-21
Identity = 55/113 (48.67%), Postives = 59/113 (52.21%), Query Frame = 0 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLL------------------------ 104
           AKFFGKNQNGGFRF LRNV++ DDPTSF +QVKNLL                        
Sbjct: 130 AKFFGKNQNGGFRFYLRNVRDADDPTSFGEQVKNLLSGLSEKVKTSRNLYAIGELEIGGS 189

Query: 105 ----------------------DDAIVELPYWCANGAEVGGRVVGGRCNFFVE 111
                                 DDAI ELPY CANGA+VGGRVVGG CNF  E
Sbjct: 190 KKVYGLVQCTRDLWTADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 242

[Close]
BLAST of Cp4.1LG04g03560 vs. NCBI nr
Match: KAG6572311.1 (Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 1.90e-21
Identity = 55/113 (48.67%), Postives = 59/113 (52.21%), Query Frame = 0 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLL------------------------ 104
           AKFFGKNQNGGFRF LRNV++ DDPTSF +QVKNLL                        
Sbjct: 130 AKFFGKNQNGGFRFYLRNVRDADDPTSFGEQVKNLLSGLSEKVKTSRNLYAIGELEIGGS 189

Query: 105 ----------------------DDAIVELPYWCANGAEVGGRVVGGRCNFFVE 111
                                 DDAI ELPY CANGA+VGGRVVGG CNF  E
Sbjct: 190 KKVYGLVQCTRDLWTADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 242

[Close]
BLAST of Cp4.1LG04g03560 vs. ExPASy TrEMBL
Match: A0A5D3C568 (Cysteine-rich repeat secretory protein 38-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004010 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.59e-21
Identity = 55/113 (48.67%), Postives = 58/113 (51.33%), Query Frame = 0 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLL------------------------ 104
           AKFFGKNQNGGFRF L NV+E DDPTSF +QVKNLL                        
Sbjct: 130 AKFFGKNQNGGFRFYLVNVREADDPTSFKEQVKNLLNGLSEMAKTSRNLYAIGDLEIGSS 189

Query: 105 ----------------------DDAIVELPYWCANGAEVGGRVVGGRCNFFVE 111
                                 DDAI ELPY CANGA+VGGRVVGG CNF  E
Sbjct: 190 KKLYGLVQCTRDLWTADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 242

[Close]
BLAST of Cp4.1LG04g03560 vs. ExPASy TrEMBL
Match: A0A6J1I0D9 (cysteine-rich repeat secretory protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111468294 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.59e-21
Identity = 54/113 (47.79%), Postives = 59/113 (52.21%), Query Frame = 0 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLL------------------------ 104
           AKFFGKNQNGGFRF LRNV++ +DPTSF +QVKNLL                        
Sbjct: 130 AKFFGKNQNGGFRFYLRNVRDAEDPTSFGEQVKNLLSGLSEKVKTSRNLYAIGELEIGSS 189

Query: 105 ----------------------DDAIVELPYWCANGAEVGGRVVGGRCNFFVE 111
                                 DDAI ELPY CANGA+VGGRVVGG CNF  E
Sbjct: 190 KKVYGLVQCTRDLWSADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 242

[Close]
BLAST of Cp4.1LG04g03560 vs. ExPASy TrEMBL
Match: A0A6J1GJK5 (cysteine-rich repeat secretory protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111454897 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.59e-21
Identity = 54/113 (47.79%), Postives = 59/113 (52.21%), Query Frame = 0 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLL------------------------ 104
           AKFFGKNQNGGFRF LRNV++ +DPTSF +QVKNLL                        
Sbjct: 130 AKFFGKNQNGGFRFYLRNVRDAEDPTSFGEQVKNLLSGLSEKVKTSRNLFAIGELEIGSS 189

Query: 105 ----------------------DDAIVELPYWCANGAEVGGRVVGGRCNFFVE 111
                                 DDAI ELPY CANGA+VGGRVVGG CNF  E
Sbjct: 190 KKVYGLVQCTRDLWTADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 242

[Close]
BLAST of Cp4.1LG04g03560 vs. ExPASy TrEMBL
Match: A0A1S3C1J7 (cysteine-rich repeat secretory protein 38-like OS=Cucumis melo OX=3656 GN=LOC103495573 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.59e-21
Identity = 55/113 (48.67%), Postives = 58/113 (51.33%), Query Frame = 0 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLL------------------------ 104
           AKFFGKNQNGGFRF L NV+E DDPTSF +QVKNLL                        
Sbjct: 130 AKFFGKNQNGGFRFYLVNVREADDPTSFKEQVKNLLNGLSEMAKTSRNLYAIGDLEIGSS 189

Query: 105 ----------------------DDAIVELPYWCANGAEVGGRVVGGRCNFFVE 111
                                 DDAI ELPY CANGA+VGGRVVGG CNF  E
Sbjct: 190 KKLYGLVQCTRDLWTADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 242

[Close]
BLAST of Cp4.1LG04g03560 vs. ExPASy TrEMBL
Match: A0A0A0K6W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044860 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.66e-21
Identity = 55/113 (48.67%), Postives = 58/113 (51.33%), Query Frame = 0 

Query: 45  AKFFGKNQNGGFRFNLRNVQEVDDPTSFIDQVKNLL------------------------ 104
           AKFFGKNQNGGFRF L NV+E DDPTSF +QVKNLL                        
Sbjct: 131 AKFFGKNQNGGFRFYLVNVREADDPTSFKEQVKNLLNGLSETAKTSRNLYAIGDLEIGSS 190

Query: 105 ----------------------DDAIVELPYWCANGAEVGGRVVGGRCNFFVE 111
                                 DDAI ELPY CANGA+VGGRVVGG CNF  E
Sbjct: 191 RKLYGLVQCTRDLWTADCKKCLDDAIAELPYCCANGAKVGGRVVGGSCNFRYE 243

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03560 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589182.11.34e-3892.54Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp... [more]
KAG7022882.15.53e-3892.54Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp... [more]
XP_023554592.11.90e-2148.67cysteine-rich repeat secretory protein 38-like [Cucurbita pepo subsp. pepo][more]
KAG7011922.11.90e-2148.67Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp... [more]
KAG6572311.11.90e-2148.67Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp... [more]
BLAST of Cp4.1LG04g03560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C5683.59e-2148.67Cysteine-rich repeat secretory protein 38-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A6J1I0D93.59e-2147.79cysteine-rich repeat secretory protein 38-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1GJK53.59e-2147.79cysteine-rich repeat secretory protein 38-like OS=Cucurbita moschata OX=3662 GN=... [more]
A0A1S3C1J73.59e-2148.67cysteine-rich repeat secretory protein 38-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A0A0K6W43.66e-2148.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044860 PE=4 SV=1[more]
BLAST of Cp4.1LG04g03560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03560.1Cp4.1LG04g03560.1mRNA