Cp4.1LG04g03520 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g03520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger CCCH domain-containing protein 40-like isoform X1
Location	Cp4.1LG04: 7237854 .. 7246295 (+)
RNA-Seq Expression	Cp4.1LG04g03520
Synteny	Cp4.1LG04g03520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCCGACAATTAGCTTTGAGAAGAATCGGCGCCATTGCTTAAAACGCGGGGAATGAAATGAAACCCTGAGAATCATTTTCATCACGGCGTTCGTCTCAGCCGTCGCGTTTTGCTTTGGATAGCTCAGGAAGTTCTGCTATCGCGATTTACCGCCGTCGAATATGTTCTATTGGACTACTGTTTCCATATTTTCTGATTCTTTGTAATCTATAGAACCTGATTTTAGCGGCTGAACTACTTCGATTCGGTTCTACATCTATTATTTCTAAATCGTCGCTGCGGAGCGTTTTCAGCCGGCGATTGCTGCGAATTTGACTATATACTTATTTTCAGTTACTGTTTATGTTCAACCATGGTGGTTGGGAGCAAACTCTTCAAAACGAAGTTATGCGTTCTTTACCAGAAAGGCCGCTGTTCTCGGCCAAGTTGTTCGTTCGCGCATGGAACCGCTGAACTCAGGCGATTTGCTGGTGCTCACGACGGTAATTTGCTCCTTATATCTTTAATCTTTCAATGTGTTCTCTAATTTTGGGATTTAGGTTGATGAAAATGGAAGTTTATAGTAGTTAGAGGCTACATGTGTCTGCAAGTTTGGTTATATGTTGTTAACAGTGGTATAGTGGTGAGATGATGTTGTTGAGTTTAGTTGTTTGGGTATGAGTTTGATTCAAGGGATCTCTGTGTTTAATCCCTGGGGAGAGGAATAGAGTAGTTTAGGATTAATGGTGCTTCTTTCTTCCATTATGATCGATCGATTTGTTATAATTAATGTTGAGGGCTTGATTTGCAGCATTCTATTTTTTAGTCCTATTAATGTCTGGTCTTCATATTCTTTCTTCTTTCTTTCTGTTCCTGTTAAGTACCGTTTTCTAAGGTGTATGTTTTTTTTTCTTAATTATACGTTCATATTTCCCGATTAGAGGCGCTTCTTTAGATTAATAAGTAGGTTCTTTCAGTTAATGATCTGAAAGTATTCTGTCTCCTGTGTATTTATAGCTATACGAACACAATCTTCCTCATCTATGGCTCTATGGTTTGGGTATCTTGTTGCTTGCTATCTTCAATATTTTAATTGGTTCAGCACGAGTTGTCACATGAGATTCCACGCCTCTACCAATGGATATTTATTATAGAAGGAAGTCGAATGATTCCGAATAAAAATTTCTTCAAGTTGCTGGCCACTGAAGTGCTAGTAAAAAATAATCATCGGGATCAGAGTTTTTTTTTCATTGGAATGGATATGGTGGATTTTTCTCTATAGAGCTGCCTGTTATATATTCCTGGAGATGTTTATGGCCCTTGTGGTGCATCAACTAAACCAGAAAGTACTTGTTGAAGAGTATAATTGTTTTCCCTAATTTATATATCTCCCACGGCTTTTGTTAATTATTCCATTATGGTTTTCTCGGTTATGCTACTGTTGTTCACGGGGCTTCATTTATCTTAGAAGAGGTTCTTTGTTGAAGAGTATAATTGTTTTCCCTAATTTATATATCTCCCACGGCTTTTGTTAATTATTCCGTTATGGTTTTCTCGGTTAAGCCACCGTTGTTCACGGGGCTTCATTGATCTTAGAAGAGGTTCTTCATTGGTTTATGCCTCCTGAGTATGCCAAATGGACATCTTGTTGGAGTGATGCAATTTTTATGGGAGTATTGCATGAAGAATTGAAATTGAATCGATATCATTGGAATGTACTTGTATCATTATGTGGAATCCCGGAGATATCTCCCATTTAGATAAAAGTTATGTGAACTTATTGTTCATCGAGGACACAGGAGTTAATCCTTCGTTCTATTCTGAATATGAAGGTTATCCAAAGGGTTTTATCCCAGGCATGGATTTTTCTATATCTTTTCATTATTTCTATGGCCCTTTTGGAACTGGCATGGCGGCACTATTACTGTTCCTTATTTTGTTTCTCATCTTTTCCATGTAATGGTAAGATAATCCTTGTAAGGACTCCATTGCTTCATTAACTTTTTTAGAAAGAATATCTGGCGATAACTAAACTTGTTAAAATAAAATTTCCCCATCTTTGCAGGTAGACGGGAATATAGAGGAAATGATTTAAGGCATAAGCTTGACAGCAGGCATTCTCCTTTGCAGGAAAGGGATTCCAGGGGGCGACATGGACCTCGTGGTATTAAAGTTATATGTTTTTCTTCGTGTGTGTGTATGTGTGTGTCTCCTTCCCCCTCCACCAAGTAGTCTTTTCTCGATGTCACCTATGCTGCGATCCCTAATTTATATGATGCTTTCTTTTTACATTTTCTAATTAAGGAATGTAGGAAGCATGATTCTTAACATACTGATGCAATTATATTTTAAGAGAATATGTGGACTGCACAATTCTTTTACATGTACTAATAGCAAAGTTCCTTTCTGATTTCTCTCATGTGGAATTGGAATTGCAGATTATAGCTCATCCTGGTCACTTGAACGACAAAGGTAAATTGTGACAATCTTTCTTTTTAAAAAATTGTATTCTCATGTTATTTTATCACTGGAGGCCGTGCTGGCTCTCAATTTATGATCCCCATCTTATATGTTTATGTTGTAGCAGTGATACTTGATTGCCTTTTACTATTAGATTGATACTAATAGTGTGAAAGATAATAAGAAAATTGATCTGCAGTCAGATTATATTATCTAAGAATTCAAGTGAAGGAAAGGTAGGAATGGATCCTGTGATGGAAATATCTATTGAGGGATCAAATTTTATTTGAAGCTCTCACAAGGAATGTTTATGACATTTTCCTCATGGGAAAATAGCCATGTATATTGATGACTTCCTTCTTACTTGAGTATTTCCAGTCCTTTTTTTTTTTGTTTTGTTAAGAGAGTACTTCCAGTGCCTGATTCCATTATTTCCTGAGCCATGCTTGAACTTTACAATTTCTTTTACTTCTTGGTTTGAAGATCTTATGTGGCATATTAGTATGGCCTGATTTCATTCTTCTACACCCAATTTTTTTTTTCATGAGTACTGGAACAAAAAATTGCTTCGTAGTAATTTTCTGGTGAATATCTTGAAATGGTACACATTCTTGTCTCAGTGATCGTAAAAGAAGGAAAAAAGAATATGGGGATTCCCGTAATGATTATTCTGGGAATTTGAGGATTTCAGATAGGAGTGAAGAACGAGATAGAGAAGGGAAAATCTCATCTGCTTCTAGAGACACTCTTGAGGGGCAGGTAAACAAAACGATGGTTTCTAACTTTTATCTTCTATTTAAAAAACAGTTACGCTCTGGAAATCTTGTTTGATCGTCTTTGAATCACACAGTTAAACAAGATGCAGGCAGATATTGAGATGGCTGAGCACCACAAACACCAAGCTGAGGTAAGTATTGTCTCTTTATTTTCTGATTCCTGCCTCAAATTCTGTGCAGGCAGTAGGCAATAGGCAATACATATTTCCTTTTCTCTATCCATGCAATAGGCAATACAATCTAACTCTTTTTAAAAATTTCCTTTATGTATTTTCCCAAATGTATTCTTGGGAGTGGTTTGAGATGTATGGTCCCTTGTTAGGTTCTATGTTTCTATCTAGGCTTCAGTGATGTGACCTTTTTGTAATTACCCTCTAGGTCTTATTTTACTGGATTGGAGTCCGTCCTTGTAGTTTGGCTCCCGTGTGTGGGCTTTATTTTTGTATTTCTTGTATTCTTTTATTTTTTCCTCGATGAAAATTCTTTTATTCCTAAAAAAAAGAAAAGAAAAGGTCCACTCATTTTTAATGAAGTTTTAAGCTTCAGTTTTTGTTTTTATTGGACAACAAATTGGCATGAGAGCAAATTAATAGGGATTGGATCCGAAACTTAGGCAAGAGTAGCTGAAGTTTATGAGACGGTGAAAGGGTGGAAGATGATTTAGCATCAATGAAGTCAGTGAAGAGCCATTAGTCTGACCGCTAAACCTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAGAAATAGAACTTTTAATTGATTGAATGAGAAGATTAATGCTCATAAGACGTGAACTCCAAAATTTTTCATTGTAATTCGCTTTTGGTGGACTAATGCTCAAGGGCCCAAAAGCTAACTACAAAAAAGGCTCCAATTTGTAAGGACAAATCCAAGACCATAAATACAAAAAGGTCAAGTGACTGATACCCACAAGGAAGCATTAAACCTCACAAGCTCCTGAACCTCCTCACTCGACTTCTCTTCGTCTCTAAAAATTCTATTAGGAGAATGCAAGAACACCTTTTTCTACCACCAAAAGAACTCATCCACCAATCCCACATGAAGTTAGCAAACTGGCCCTCTCACAGTAAATGGGACCAATGCTCTTCATTCCTCCTACAGAGAAGGCACCATTGCAGATAAAATATTGAGGTAGAGTGCCTTTAGATGTGATTTTGAGTGTTAACTTCCCCAAGTAAAACTTGGAACGCTAAAAAGTTCACCTTCTTAGAATATTAACCTTCAAGAAAGAAGCAAAAATAGAAGCCTCAGGATCAGTTAACTAGGCAAGTGAGGAAGACAAAGAACAAAAAAAGGAATGACTAGAAAAAGCACCTAAAAGGTTTGGGGTTTAGACTCTAGTACCTCTCCTCCCCAAAATAATAACCTATTCTCAAAGGGTATAAAGAAGGCCACCTTATCAATTGCCTCCATACTAATTAGAGAATGATAAAACCCTAAGGAGATCTAACAAGAGAGATTATGAGAAGACAACACTAATGCCATTGAATGCAATCTCTTATTTGAAAGGAAATAGAGACGAGGAAAAAGGATGCACAAAGATCCTCTAAAAAAAAAATAAACTCTTGAAGTTTTCCCACATTGCATTGACGTTTGAAATTTACAAAAGGGATGCATTATCCATGATTTTGACAAAAAGTCCTTCCCAATTTACAAAGAGGGAGGTACGACTATAGGAAGCAAAGATATTAGACAATTGACACCAAGATATAATGTGGTAAACAATATTGTTGAAGAGTTTTGTATAAGTTTGTGTCTTTTCTGTGAATACTCTTTGATTTCCTTCTTTCCACATATTCCAAAAGAAACCAATGATGAGGTTCTTCCATAGTATGGTTTTTGTATTCTTGAAGGGGTGGTACGTTATGGCCGTGTCCAATAAATTCTTTACCTTCCTAGGAAAAGTGAGATGCCATCCGAAGGTATTAAGAATTTTTGTCCAAAAATTTTAAGCTTACGTGCAATGCATAAATAAATGCATTCGTTATTCGTTTTCTTTCTTACCTAATAGGCACCAATTTGGGAATAGAGTCATGTTTTTAAAGATTTTCAGTTGTAATAATGGCTTTATGCACTATTTCCCAAAGGAAATATTTTAACTTTTTAAGATGATACTTTTTAAGATGATTTCCTTTCCATATTATTTTTGCTAGCACAAGATTTATTGCTTCTACTTTTTTCCCTGTCTGTCATCAAAGATTTTGTAGAGGACTTTGTCAGTGATGGGAAGTCATGTCAATGAGTCTGCTTCGTTAGACCATACAACTGGGGCAAGCTTGAGGCTTAATTTGGCTCATTTTGTAGTGTCGTTATCCTTTAGGTTTCTACCAAGCTTCAGGTCCCAAAAATGGTTGACATTATTCCATGTTTCTTTCATCATTCCATGTGGTGGTTAGTGTTGATACCAGCTTATCGCTTTGGTCGGCCTGTAGGTGACTGAGTGAGCTTGTTGGTCAGTATGGGGTTGAAATAATCAGCCTAGGGTCGGGGATTTGTGGGGTAAGTAGGGTATGGGAACAGTTATGACTGAACTAAGCATCTTGAATGTATAATAAACATTTGTATTTTCCTCTTTCACAGTAATGTAGATTCATTCCTAACGGAGATTATTTTAATGTCTACTGGTTGCAAACTTTGCAACCTGGTTGACCCAAAATTTGCCCCTAGAGTGCGTAGTGGTCACTTAATTCTTATCATATGGTTGAAACTGGAACTCCCTTAACTGGGAAGGCGCTTTTATGCTGTTTCAAGTGTCATATGCTATTGATTGGTATTTTGACTGAGCAATATTTTCAAGATAATGTATATTTCATTCGCTCGGTGAAATGATAAATATATATTGAAAATATTAGCAAATTGTACTTCATTTTTGAAGGTCTATCTGGATGAGAGGATCCAAGAAGTGGATAGTTTAACTTCTAGAATTCAGGAGCTAGAATCCCAATTATATAAAGAGAGGGAGGATTCTAGAAGGTACTCATAATCGTCTTTTAAGTACACGTTGACATGTTGCCTGCTGAAAGTGGACACCTACCTCTTATTCCTATTTTTCTTGGATCTTTAATATTCAGGATCAAATCAAAAATCAAGAAATTTGTCAAAGCACATAATCGTTACTCAAGGATACAAGATGAACTGAAGCGGCAAGTATACTTGTCCAATTCTTTTGGTTGCGCTTTCTAATGCTTATGACTTTCTGAAAATTATGATAACTTTTCTGAACTTGTAGTTCGCAAGTCCGACTTGAACAGTTGGGGGATCAGCTGGGGTCGGATGTTAATAAAATTGGTGCCAACGAAGAAGACTCGAGCATTAATATTGTGAGCGATGGAGAGGACCCTGGTTTTCATGCAGTTAGCCCTCTTCATGACCTGCAAAAAGACAATTCTGCAAGCAAGAAGAAGCATATTGTTCAAGATATTGCGGAAAACTCAAAACGAGGTGCCTTTTGAGAACTAACTTCTTTACATTGATGTGTCATTTAAAAAAAAAATCTTTTATTTGGTTTGAAATCTCTTAATATGCCTTCAGCCCTAGTGGGCTGTGATAATTTGTAATTATGATGTTTTTCCGTCTTGGACCTTTATTTCCTTCATACTTGGAATAAAATTTGTGCATGCTACATTAGCTGATTTAAACAAAGGAAGTAAAGAGGCAGTGGGCAGATTGAGAAGGTTCTCTCGGTGGAATGCCCATCCTTCTCAATCGGTATATAGCAAAATTGAGGCAGTTGGCAATGAAGTCAATGCTTTGATACCTACAGCAAATGACAGCAAGCAGAAAAGAGGAAGGACATCTACTGCTGTTTCTTCTGCGGACAAGGTGACTTTGATATTTTTATATTCAATTTTATTTGTTTGTACAATGTACAACGTGCTGTGCATTTGAGGTTTGGATGTCTGATTTGTTATCGACATATGGAACACGAAGCCTATAGGTTTTGGCAAGCATGAAGTGTGCTACTCTCTAGCTATATAATTCATCTTTTCGTAGTTCTTGTTGTTTTCAGGACCTAGGATAACATTCTCCCTCTGTCTTGCAAGATTAATATGAAGCTTTCCTTGTATGCTTTGCAAATGACATCGTTAAATTCTTTGTACGTCTATGCACTCAATTTCTCAACTCAAATCTGCGCAGGTTAGGGGTCTGGAATCAGGTGTTGTGCCATTAACCAGCATGGCTGCCCATGCAGTTGATGAAGAAGTTGATATTGAATTGGACGTCAACAATAAAGTGAACGAAACGAGGGAAAATACTAAGGAAGCTTCGTTCGGTAGCCTGCCCTTTCCGCCCCCTCCACCTCCAATCCGTGAAATTAACCATTCAAGGGTTAGCAAGTTCTCTGAATTTCACGACTTTCACTTTTTTCGTTTAATCCATATACAATTGGAACTTTTCTACTTTGTTTCTTCTATAAGTTTGAACCTAGAAAGGTAGATATGAGATCCCACATTGATTATCGATTAGAGAAGGGAATGAGTGCCAGTGTTTGAAGGGAGGTGGATTGTGAGATCCCACATCGGCTGGAGAGGAGAACGAAGCAGGGTGTGGAAACCTCTTCCTATCAGACATATTTTAAAAACCTTGAGGGAAACCCCTGCTAGCAGTGGGCTTGAGCTGTTGGAGAACGAAGCACGGTGTGGAAACCTCTTCCTATCAGACATATTTTAAAAACCTTGAGGGAAATCCCTGCTAGCGGTGGGCTTGAGCTGTTACCGTAGAAAGTCGAGAGTGTTATTCAATATGGTTTTATTTCTTTAACAAAGAATAAAGCTATTGTCACCTCTTACTTGTAGCATCTAACATAATATTTGATTTGCAGTATGAAAGTGAAGATCAAAATGTAGATGTGGTGGCGCTCGATGACGAAAGGGCACGCTTGGACAATGCCTAACATTGAATCCTGTTGTAGAGATTAAATGAATTCTTAGCAAAGTAATTAGTTTTAGTTTCATAGAGTTGCGCACAGGTTAGGGTTTTATATGTTCTTGTTTAATACACTTGTAATTTCTATATGTTCTTGTTTAATACACTTGTAATTTCGAGTTTGTGATTTAGCATATCAGATACCGATGACCTCTCCATTCTATTTTTTCATGGTAGATTTTGGTTGCTTTTTTTGAATTATCATGGCGAAGATATTCTCTCTGAACTAGTACAAGCATTTCAATGCACTAATTTACTTTGTGATTCGTCACAAATTTC

mRNA sequence

TAGCCGACAATTAGCTTTGAGAAGAATCGGCGCCATTGCTTAAAACGCGGGGAATGAAATGAAACCCTGAGAATCATTTTCATCACGGCGTTCGTCTCAGCCGTCGCGTTTTGCTTTGGATAGCTCAGGAAGTTCTGCTATCGCGATTTACCGCCGTCGAATATGTTCTATTGGACTACTGTTTCCATATTTTCTGATTCTTTGTAATCTATAGAACCTGATTTTAGCGGCTGAACTACTTCGATTCGGTTCTACATCTATTATTTCTAAATCGTCGCTGCGGAGCGTTTTCAGCCGGCGATTGCTGCGAATTTGACTATATACTTATTTTCAGTTACTGTTTATGTTCAACCATGGTGGTTGGGAGCAAACTCTTCAAAACGAAGTTATGCGTTCTTTACCAGAAAGGCCGCTGTTCTCGGCCAAGTTGTTCGTTCGCGCATGGAACCGCTGAACTCAGGCGATTTGCTGGTGCTCACGACGGTAGACGGGAATATAGAGGAAATGATTTAAGGCATAAGCTTGACAGCAGGCATTCTCCTTTGCAGGAAAGGGATTCCAGGGGGCGACATGGACCTCGTGATTATAGCTCATCCTGGTCACTTGAACGACAAAGTGATCGTAAAAGAAGGAAAAAAGAATATGGGGATTCCCGTAATGATTATTCTGGGAATTTGAGGATTTCAGATAGGAGTGAAGAACGAGATAGAGAAGGGAAAATCTCATCTGCTTCTAGAGACACTCTTGAGGGGCAGTTAAACAAGATGCAGGCAGATATTGAGATGGCTGAGCACCACAAACACCAAGCTGAGGTCTATCTGGATGAGAGGATCCAAGAAGTGGATAGTTTAACTTCTAGAATTCAGGAGCTAGAATCCCAATTATATAAAGAGAGGGAGGATTCTAGAAGGATCAAATCAAAAATCAAGAAATTTGTCAAAGCACATAATCGTTACTCAAGGATACAAGATGAACTGAAGCGGCAAGTATACTTTTCGCAAGTCCGACTTGAACAGTTGGGGGATCAGCTGGGGTCGGATGTTAATAAAATTGGTGCCAACGAAGAAGACTCGAGCATTAATATTGTGAGCGATGGAGAGGACCCTGGTTTTCATGCAGTTAGCCCTCTTCATGACCTGCAAAAAGACAATTCTGCAAGCAAGAAGAAGCATATTGTTCAAGATATTGCGGAAAACTCAAAACGAGCTGATTTAAACAAAGGAAGTAAAGAGGCAGTGGGCAGATTGAGAAGGTTCTCTCGGTGGAATGCCCATCCTTCTCAATCGGTATATAGCAAAATTGAGGCAGTTGGCAATGAAGTCAATGCTTTGATACCTACAGCAAATGACAGCAAGCAGAAAAGAGGAAGGACATCTACTGCTGTTTCTTCTGCGGACAAGGTTAGGGGTCTGGAATCAGGTGTTGTGCCATTAACCAGCATGGCTGCCCATGCAGTTGATGAAGAAGTTGATATTGAATTGGACGTCAACAATAAAGTGAACGAAACGAGGGAAAATACTAAGGAAGCTTCGTTCGGTAGCCTGCCCTTTCCGCCCCCTCCACCTCCAATCCGTGAAATTAACCATTCAAGGTATGAAAGTGAAGATCAAAATGTAGATGTGGTGGCGCTCGATGACGAAAGGGCACGCTTGGACAATGCCTAACATTGAATCCTGTTGTAGAGATTAAATGAATTCTTAGCAAAGTAATTAGTTTTAGTTTCATAGAGTTGCGCACAGGTTAGGGTTTTATATGTTCTTGTTTAATACACTTGTAATTTCTATATGTTCTTGTTTAATACACTTGTAATTTCGAGTTTGTGATTTAGCATATCAGATACCGATGACCTCTCCATTCTATTTTTTCATGGTAGATTTTGGTTGCTTTTTTTGAATTATCATGGCGAAGATATTCTCTCTGAACTAGTACAAGCATTTCAATGCACTAATTTACTTTGTGATTCGTCACAAATTTC

Coding sequence (CDS)

ATGGTGGTTGGGAGCAAACTCTTCAAAACGAAGTTATGCGTTCTTTACCAGAAAGGCCGCTGTTCTCGGCCAAGTTGTTCGTTCGCGCATGGAACCGCTGAACTCAGGCGATTTGCTGGTGCTCACGACGGTAGACGGGAATATAGAGGAAATGATTTAAGGCATAAGCTTGACAGCAGGCATTCTCCTTTGCAGGAAAGGGATTCCAGGGGGCGACATGGACCTCGTGATTATAGCTCATCCTGGTCACTTGAACGACAAAGTGATCGTAAAAGAAGGAAAAAAGAATATGGGGATTCCCGTAATGATTATTCTGGGAATTTGAGGATTTCAGATAGGAGTGAAGAACGAGATAGAGAAGGGAAAATCTCATCTGCTTCTAGAGACACTCTTGAGGGGCAGTTAAACAAGATGCAGGCAGATATTGAGATGGCTGAGCACCACAAACACCAAGCTGAGGTCTATCTGGATGAGAGGATCCAAGAAGTGGATAGTTTAACTTCTAGAATTCAGGAGCTAGAATCCCAATTATATAAAGAGAGGGAGGATTCTAGAAGGATCAAATCAAAAATCAAGAAATTTGTCAAAGCACATAATCGTTACTCAAGGATACAAGATGAACTGAAGCGGCAAGTATACTTTTCGCAAGTCCGACTTGAACAGTTGGGGGATCAGCTGGGGTCGGATGTTAATAAAATTGGTGCCAACGAAGAAGACTCGAGCATTAATATTGTGAGCGATGGAGAGGACCCTGGTTTTCATGCAGTTAGCCCTCTTCATGACCTGCAAAAAGACAATTCTGCAAGCAAGAAGAAGCATATTGTTCAAGATATTGCGGAAAACTCAAAACGAGCTGATTTAAACAAAGGAAGTAAAGAGGCAGTGGGCAGATTGAGAAGGTTCTCTCGGTGGAATGCCCATCCTTCTCAATCGGTATATAGCAAAATTGAGGCAGTTGGCAATGAAGTCAATGCTTTGATACCTACAGCAAATGACAGCAAGCAGAAAAGAGGAAGGACATCTACTGCTGTTTCTTCTGCGGACAAGGTTAGGGGTCTGGAATCAGGTGTTGTGCCATTAACCAGCATGGCTGCCCATGCAGTTGATGAAGAAGTTGATATTGAATTGGACGTCAACAATAAAGTGAACGAAACGAGGGAAAATACTAAGGAAGCTTCGTTCGGTAGCCTGCCCTTTCCGCCCCCTCCACCTCCAATCCGTGAAATTAACCATTCAAGGTATGAAAGTGAAGATCAAAATGTAGATGTGGTGGCGCTCGATGACGAAAGGGCACGCTTGGACAATGCCTAA

Protein sequence

MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQLGDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENSKRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTSTAVSSADKVRGLESGVVPLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPPPPPIREINHSRYESEDQNVDVVALDDERARLDNA

Homology

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BLAST of Cp4.1LG04g03520 vs. ExPASy Swiss-Prot
Match: Q93XW7 (Zinc finger CCCH domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=At3g21810 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.0e-46
Identity = 164/457 (35.89%), Postives = 239/457 (52.30%), Query Frame = 0


Query: 4   GSKLFKTKLCVLYQK-GRCSRPSCSFAHGTAELRR-----FAGAHDG-------RREYRG 63
           GS ++KTKLC+L+ K G CSRP+C+FAHG AELRR     F G           RR    
Sbjct: 3   GSSMYKTKLCILFNKTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHNMD 62

Query: 64  NDLRHKLDSRHSPLQERDSRGRHGPR-----DYSSSWSLERQSDRKRRKKEYGDSRNDYS 123
           +DLR +L  + SP + R S  R G R      + +S   E + D+  R+    D R DY+
Sbjct: 63  SDLRDRLGRQFSP-ERRPSLDRSGRRVQRFSGHDNSMPFENRRDKDYRENRRFDERRDYA 122

Query: 124 GNLRISDRSEERDREGKIS-SASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVD 183
           G L++ +R E+R  +G+       + LE QL  ++ D++M    K + E  ++ +  EVD
Sbjct: 123 GGLKVGNRIEDRAEDGRNKFHGYNNVLEEQLKDVEMDVKMLTDDKLRLEASVERKAHEVD 182

Query: 184 SLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQLGD 243
            LTSRIQELE+QL +E+++ RRI S  KKFVK +NR+ R QD+LKR    S+ RL++LG+
Sbjct: 183 ILTSRIQELETQLDREKDECRRITSSSKKFVKEYNRFLRAQDDLKR----SEARLQKLGN 242

Query: 244 QLGSDVNKIGANEEDSSINIVSDGEDPGFH---AVSPLHDLQKDNSASKKKHIVQDIAEN 303
           QL + +     N  D  ++IVSD E  G +   A  P ++LQ  +S S+KKH V      
Sbjct: 243 QLSTYLAGSEGNNRDVGLDIVSDEETNGRNLRTACDPHNELQNTSSLSRKKHYVDQYTTK 302

Query: 304 SKRAD--LNKGSKEAV-GRLRRFSRWNAHPSQSVYSKIEAVGNEVNAL-IPTANDSKQKR 363
               D  + +G +E V    +R   WN   S+S   +     N+ + +   ++ +   KR
Sbjct: 303 EPVEDGLIGRGEEEKVENEKKRPPCWNMLSSKSYSEEESGAWNDEDTINRSSSKEDNWKR 362

Query: 364 GRTSTAVSSADKVRGLESGVVPLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGS- 423
            R S   S+ DK       V+  TSMAA   D+           V E+ E   EA+ GS 
Sbjct: 363 RRFSIGTSATDK-------VILSTSMAAREFDD-----------VAESEEENPEAANGSP 422

Query: 424 LPFPPPPPPIREINHSRYESEDQNVDVV----ALDDE 430
           L   PPPPP R+  H + + +D N DV+    A DD+
Sbjct: 423 LISLPPPPPFRDA-HVQRDEDDVNGDVMEQKKAYDDD 435

[Close]

BLAST of Cp4.1LG04g03520 vs. ExPASy Swiss-Prot
Match: Q6H7U2 (Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0161200 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.4e-45
Identity = 155/441 (35.15%), Postives = 237/441 (53.74%), Query Frame = 0


Query: 8   FKTKLCVLYQKGRCSRPSCSFAHGTAELRR---FAGA---HDGRREYRGNDLRHKLDSRH 67
           +KTKLC L+Q+G C+R +CSFAHG  ++RR     GA   H GRR+YR  D R ++D R 
Sbjct: 11  YKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAGDFRGRIDRRF 70

Query: 68  SPLQE----RDSRGRHGP----------RDYSSSWSLERQSDRKRRKKEYGDSRNDYSGN 127
           SP +     R+SRG H P          RD S S S  R+S+R+  KK   D   + S +
Sbjct: 71  SPRRRHSPGRESRG-HRPLYDRRPSSRERDSSYSRSPSRKSERRHEKKT-DDGETNSSRS 130

Query: 128 LRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLT 187
           L +SD ++E+ ++   S   ++  E QL +++ D+E     K Q EV LDE+I EV  ++
Sbjct: 131 LSLSDNNDEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEKIDEVRKIS 190

Query: 188 SRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQLGDQLG 247
           S++ +LE QL +E+++  R+ SK+KKF+KAH R+ + Q+E+KR    SQ R E+LGD L 
Sbjct: 191 SKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKR----SQARFERLGDLLA 250

Query: 248 SDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENSKRADL 307
           SD+ K GANEE SS+N     ED        L++   + +A+KK+ I    +E +K   +
Sbjct: 251 SDILKRGANEEGSSVN-----ED--------LNERSPNTAATKKRSIPYSTSEEAKA--V 310

Query: 308 NKGSKEAVGRLRRFSRWNAHPSQ-SVYSKIEAVGNEVNALIPTANDSKQKRGRTSTAVSS 367
            K  +     + R  ++ +  +     SK       +        D K K G    A   
Sbjct: 311 KKRRERDSDTMTRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWEDEKSKLG----ANIF 370

Query: 368 ADKVRGLE-SGVVPLTSMAAHAVD---EEVDIELDVNNKVNETRENTKEASFGSLPFPPP 424
            +KV+G     V+P T MAAHA+D   E +++E D +  ++   EN  +    S   P  
Sbjct: 371 TEKVKGSPVRHVLPSTGMAAHAIDDLNEAIELE-DRHESIDALLENDADDKTRSPAIPLQ 425

[Close]

BLAST of Cp4.1LG04g03520 vs. NCBI nr
Match: XP_023530203.1 (zinc finger CCCH domain-containing protein 40-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 820 bits (2117), Expect = 9.83e-299
Identity = 432/436 (99.08%), Postives = 432/436 (99.08%), Query Frame = 0


Query: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60
           MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR
Sbjct: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60

Query: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120
           HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE
Sbjct: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120

Query: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180
           GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE
Sbjct: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180

Query: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQLGDQLGSDVNKIGANEEDS 240
           REDSRRIKSKIKKFVKAHNRYSRIQDELKR    SQVRLEQLGDQLGSDVNKIGANEEDS
Sbjct: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKR----SQVRLEQLGDQLGSDVNKIGANEEDS 240

Query: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENSKRADLNKGSKEAVGRLRR 300
           SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENSKRADLNKGSKEAVGRLRR
Sbjct: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENSKRADLNKGSKEAVGRLRR 300

Query: 301 FSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTSTAVSSADKVRGLESGVVPL 360
           FSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTSTAVSSADKVRGLESGVVPL
Sbjct: 301 FSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTSTAVSSADKVRGLESGVVPL 360

Query: 361 TSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPPPPPIREINHSRYESEDQN 420
           TSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPPPPPIREINHSRYESEDQN
Sbjct: 361 TSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPPPPPIREINHSRYESEDQN 420

Query: 421 VDVVALDDERARLDNA 436
           VDVVALDDERARLDNA
Sbjct: 421 VDVVALDDERARLDNA 432

[Close]

BLAST of Cp4.1LG04g03520 vs. NCBI nr
Match: XP_022930759.1 (zinc finger CCCH domain-containing protein 40-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 801 bits (2068), Expect = 2.99e-291
Identity = 423/437 (96.80%), Postives = 429/437 (98.17%), Query Frame = 0


Query: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60
           MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR
Sbjct: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60

Query: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120
           HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE
Sbjct: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120

Query: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180
           GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE
Sbjct: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180

Query: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQLGDQLGSDVNKIGANEEDS 240
           REDSRRIKSKIKKFVKAHNRYSRIQDELKR    SQVRL+QLGDQLGSDVNKIGANEEDS
Sbjct: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKR----SQVRLQQLGDQLGSDVNKIGANEEDS 240

Query: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENSKRADLNKGSKEAVGRLRR 300
           SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIA NSKRADLNKGSKEAVGRLRR
Sbjct: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAGNSKRADLNKGSKEAVGRLRR 300

Query: 301 FSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTSTAVSSADKVRGLESGVV-P 360
           FSRWNAHPSQSVYSKIEAVGNEVN LIPTAN+SKQKRGRTST VSSADKVRGLESGVV P
Sbjct: 301 FSRWNAHPSQSVYSKIEAVGNEVNDLIPTANESKQKRGRTSTTVSSADKVRGLESGVVVP 360

Query: 361 LTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPPPPPIREINHSRYESEDQ 420
           LTSMAAHAVDEEVDIEL++N+KVNETRENTKEASFGSLPFPPPPPPIREINHS+YESEDQ
Sbjct: 361 LTSMAAHAVDEEVDIELEINSKVNETRENTKEASFGSLPFPPPPPPIREINHSKYESEDQ 420

Query: 421 NVDVVALDDERARLDNA 436
           NVDVVALDDERARLDNA
Sbjct: 421 NVDVVALDDERARLDNA 433

[Close]

BLAST of Cp4.1LG04g03520 vs. NCBI nr
Match: XP_022988786.1 (zinc finger CCCH domain-containing protein 40-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 798 bits (2062), Expect = 2.55e-290
Identity = 423/438 (96.58%), Postives = 428/438 (97.72%), Query Frame = 0


Query: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60
           MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR
Sbjct: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60

Query: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120
           HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE
Sbjct: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120

Query: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180
           GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE
Sbjct: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180

Query: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQLGDQLGSDVNKIGANEEDS 240
           REDSRRIKSKIKKFVKAHNRYSRIQDELKR    SQ RL+QLGDQLGSDVNKIGANEEDS
Sbjct: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKR----SQARLQQLGDQLGSDVNKIGANEEDS 240

Query: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENSKRADLNKGSKEAVGRLRR 300
           SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKH+VQDIAENSKRADLNKGSKEAVGRLRR
Sbjct: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHVVQDIAENSKRADLNKGSKEAVGRLRR 300

Query: 301 FSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTSTAVSSADKVRGLESGVV-P 360
           FSRWNAHPSQSVYSKIEAVGNEVN LIPTAN+SKQKRGRTST VSSADKVRGLESGVV P
Sbjct: 301 FSRWNAHPSQSVYSKIEAVGNEVNDLIPTANESKQKRGRTSTTVSSADKVRGLESGVVVP 360

Query: 361 LTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPPPPP-IREINHSRYESED 420
           LTSMAAHAVDEEVDIEL++NNKVNETRENTKEASFGSLPFPPPPPP IREINHSRYESED
Sbjct: 361 LTSMAAHAVDEEVDIELEINNKVNETRENTKEASFGSLPFPPPPPPPIREINHSRYESED 420

Query: 421 QNVDVVALDDERARLDNA 436
           QNVDVV LDDERARLDNA
Sbjct: 421 QNVDVVTLDDERARLDNA 434

[Close]

BLAST of Cp4.1LG04g03520 vs. NCBI nr
Match: XP_023530200.1 (zinc finger CCCH domain-containing protein 40-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 732 bits (1889), Expect = 5.76e-264
Identity = 389/394 (98.73%), Postives = 390/394 (98.98%), Query Frame = 0


Query: 43  DGRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN 102
           +GRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN
Sbjct: 45  NGRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN 104

Query: 103 DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE 162
           DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE
Sbjct: 105 DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE 164

Query: 163 VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQL 222
           VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKR    SQVRLEQL
Sbjct: 165 VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKR----SQVRLEQL 224

Query: 223 GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENS 282
           GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENS
Sbjct: 225 GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENS 284

Query: 283 KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTST 342
           KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTST
Sbjct: 285 KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTST 344

Query: 343 AVSSADKVRGLESGVVPLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPP 402
           AVSSADKVRGLESGVVPLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPP
Sbjct: 345 AVSSADKVRGLESGVVPLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPP 404

Query: 403 PPPIREINHSRYESEDQNVDVVALDDERARLDNA 436
           PPPIREINHSRYESEDQNVDVVALDDERARLDNA
Sbjct: 405 PPPIREINHSRYESEDQNVDVVALDDERARLDNA 434

[Close]

BLAST of Cp4.1LG04g03520 vs. NCBI nr
Match: XP_023530198.1 (zinc finger CCCH domain-containing protein 13-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 732 bits (1889), Expect = 9.02e-264
Identity = 389/394 (98.73%), Postives = 390/394 (98.98%), Query Frame = 0


Query: 43  DGRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN 102
           +GRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN
Sbjct: 57  NGRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN 116

Query: 103 DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE 162
           DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE
Sbjct: 117 DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE 176

Query: 163 VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQL 222
           VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKR    SQVRLEQL
Sbjct: 177 VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKR----SQVRLEQL 236

Query: 223 GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENS 282
           GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENS
Sbjct: 237 GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENS 296

Query: 283 KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTST 342
           KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTST
Sbjct: 297 KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTST 356

Query: 343 AVSSADKVRGLESGVVPLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPP 402
           AVSSADKVRGLESGVVPLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPP
Sbjct: 357 AVSSADKVRGLESGVVPLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPP 416

Query: 403 PPPIREINHSRYESEDQNVDVVALDDERARLDNA 436
           PPPIREINHSRYESEDQNVDVVALDDERARLDNA
Sbjct: 417 PPPIREINHSRYESEDQNVDVVALDDERARLDNA 446

[Close]

BLAST of Cp4.1LG04g03520 vs. ExPASy TrEMBL
Match: A0A6J1ESE6 (zinc finger CCCH domain-containing protein 40-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437138 PE=4 SV=1)

HSP 1 Score: 801 bits (2068), Expect = 1.45e-291
Identity = 423/437 (96.80%), Postives = 429/437 (98.17%), Query Frame = 0


Query: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60
           MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR
Sbjct: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60

Query: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120
           HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE
Sbjct: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120

Query: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180
           GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE
Sbjct: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180

Query: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQLGDQLGSDVNKIGANEEDS 240
           REDSRRIKSKIKKFVKAHNRYSRIQDELKR    SQVRL+QLGDQLGSDVNKIGANEEDS
Sbjct: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKR----SQVRLQQLGDQLGSDVNKIGANEEDS 240

Query: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENSKRADLNKGSKEAVGRLRR 300
           SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIA NSKRADLNKGSKEAVGRLRR
Sbjct: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAGNSKRADLNKGSKEAVGRLRR 300

Query: 301 FSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTSTAVSSADKVRGLESGVV-P 360
           FSRWNAHPSQSVYSKIEAVGNEVN LIPTAN+SKQKRGRTST VSSADKVRGLESGVV P
Sbjct: 301 FSRWNAHPSQSVYSKIEAVGNEVNDLIPTANESKQKRGRTSTTVSSADKVRGLESGVVVP 360

Query: 361 LTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPPPPPIREINHSRYESEDQ 420
           LTSMAAHAVDEEVDIEL++N+KVNETRENTKEASFGSLPFPPPPPPIREINHS+YESEDQ
Sbjct: 361 LTSMAAHAVDEEVDIELEINSKVNETRENTKEASFGSLPFPPPPPPIREINHSKYESEDQ 420

Query: 421 NVDVVALDDERARLDNA 436
           NVDVVALDDERARLDNA
Sbjct: 421 NVDVVALDDERARLDNA 433

[Close]

BLAST of Cp4.1LG04g03520 vs. ExPASy TrEMBL
Match: A0A6J1JI85 (zinc finger CCCH domain-containing protein 40-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486025 PE=4 SV=1)

HSP 1 Score: 798 bits (2062), Expect = 1.23e-290
Identity = 423/438 (96.58%), Postives = 428/438 (97.72%), Query Frame = 0


Query: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60
           MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR
Sbjct: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60

Query: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120
           HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE
Sbjct: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120

Query: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180
           GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE
Sbjct: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180

Query: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQLGDQLGSDVNKIGANEEDS 240
           REDSRRIKSKIKKFVKAHNRYSRIQDELKR    SQ RL+QLGDQLGSDVNKIGANEEDS
Sbjct: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKR----SQARLQQLGDQLGSDVNKIGANEEDS 240

Query: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENSKRADLNKGSKEAVGRLRR 300
           SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKH+VQDIAENSKRADLNKGSKEAVGRLRR
Sbjct: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHVVQDIAENSKRADLNKGSKEAVGRLRR 300

Query: 301 FSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTSTAVSSADKVRGLESGVV-P 360
           FSRWNAHPSQSVYSKIEAVGNEVN LIPTAN+SKQKRGRTST VSSADKVRGLESGVV P
Sbjct: 301 FSRWNAHPSQSVYSKIEAVGNEVNDLIPTANESKQKRGRTSTTVSSADKVRGLESGVVVP 360

Query: 361 LTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPPPPP-IREINHSRYESED 420
           LTSMAAHAVDEEVDIEL++NNKVNETRENTKEASFGSLPFPPPPPP IREINHSRYESED
Sbjct: 361 LTSMAAHAVDEEVDIELEINNKVNETRENTKEASFGSLPFPPPPPPPIREINHSRYESED 420

Query: 421 QNVDVVALDDERARLDNA 436
           QNVDVV LDDERARLDNA
Sbjct: 421 QNVDVVTLDDERARLDNA 434

[Close]

BLAST of Cp4.1LG04g03520 vs. ExPASy TrEMBL
Match: A0A6J1EWA4 (zinc finger CCCH domain-containing protein 40-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437138 PE=4 SV=1)

HSP 1 Score: 713 bits (1840), Expect = 8.39e-257
Identity = 380/395 (96.20%), Postives = 387/395 (97.97%), Query Frame = 0


Query: 43  DGRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN 102
           +GRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN
Sbjct: 45  NGRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN 104

Query: 103 DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE 162
           DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE
Sbjct: 105 DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE 164

Query: 163 VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQL 222
           VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKR    SQVRL+QL
Sbjct: 165 VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKR----SQVRLQQL 224

Query: 223 GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENS 282
           GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIA NS
Sbjct: 225 GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAGNS 284

Query: 283 KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTST 342
           KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVN LIPTAN+SKQKRGRTST
Sbjct: 285 KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNDLIPTANESKQKRGRTST 344

Query: 343 AVSSADKVRGLESGVV-PLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPP 402
            VSSADKVRGLESGVV PLTSMAAHAVDEEVDIEL++N+KVNETRENTKEASFGSLPFPP
Sbjct: 345 TVSSADKVRGLESGVVVPLTSMAAHAVDEEVDIELEINSKVNETRENTKEASFGSLPFPP 404

Query: 403 PPPPIREINHSRYESEDQNVDVVALDDERARLDNA 436
           PPPPIREINHS+YESEDQNVDVVALDDERARLDNA
Sbjct: 405 PPPPIREINHSKYESEDQNVDVVALDDERARLDNA 435

[Close]

BLAST of Cp4.1LG04g03520 vs. ExPASy TrEMBL
Match: A0A6J1JMK2 (zinc finger CCCH domain-containing protein 40-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486025 PE=4 SV=1)

HSP 1 Score: 711 bits (1834), Expect = 3.27e-256
Identity = 380/396 (95.96%), Postives = 386/396 (97.47%), Query Frame = 0


Query: 43  DGRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN 102
           +GRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN
Sbjct: 24  NGRREYRGNDLRHKLDSRHSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRN 83

Query: 103 DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE 162
           DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE
Sbjct: 84  DYSGNLRISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQE 143

Query: 163 VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQL 222
           VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKR    SQ RL+QL
Sbjct: 144 VDSLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKR----SQARLQQL 203

Query: 223 GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENS 282
           GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKH+VQDIAENS
Sbjct: 204 GDQLGSDVNKIGANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHVVQDIAENS 263

Query: 283 KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTST 342
           KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVN LIPTAN+SKQKRGRTST
Sbjct: 264 KRADLNKGSKEAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNDLIPTANESKQKRGRTST 323

Query: 343 AVSSADKVRGLESGVV-PLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPP 402
            VSSADKVRGLESGVV PLTSMAAHAVDEEVDIEL++NNKVNETRENTKEASFGSLPFPP
Sbjct: 324 TVSSADKVRGLESGVVVPLTSMAAHAVDEEVDIELEINNKVNETRENTKEASFGSLPFPP 383

Query: 403 PPPP-IREINHSRYESEDQNVDVVALDDERARLDNA 436
           PPPP IREINHSRYESEDQNVDVV LDDERARLDNA
Sbjct: 384 PPPPPIREINHSRYESEDQNVDVVTLDDERARLDNA 415

[Close]

BLAST of Cp4.1LG04g03520 vs. ExPASy TrEMBL
Match: A0A6J1JKJ8 (zinc finger CCCH domain-containing protein 13-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111486025 PE=4 SV=1)

HSP 1 Score: 690 bits (1781), Expect = 1.46e-248
Identity = 379/438 (86.53%), Postives = 384/438 (87.67%), Query Frame = 0


Query: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60
           MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR
Sbjct: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAGAHDGRREYRGNDLRHKLDSR 60

Query: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120
           HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE
Sbjct: 61  HSPLQERDSRGRHGPRDYSSSWSLERQSDRKRRKKEYGDSRNDYSGNLRISDRSEERDRE 120

Query: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180
           GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE
Sbjct: 121 GKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSRIQELESQLYKE 180

Query: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQLGDQLGSDVNKIGANEEDS 240
           REDSRRIKSKIKKFVKAHNRYSRIQDELKR    SQ RL+QLGDQLGSDVNKIGANEEDS
Sbjct: 181 REDSRRIKSKIKKFVKAHNRYSRIQDELKR----SQARLQQLGDQLGSDVNKIGANEEDS 240

Query: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHIVQDIAENSKRADLNKGSKEAVGRLRR 300
           SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKH+VQDIAENSKRA               
Sbjct: 241 SINIVSDGEDPGFHAVSPLHDLQKDNSASKKKHVVQDIAENSKRA--------------- 300

Query: 301 FSRWNAHPSQSVYSKIEAVGNEVNALIPTANDSKQKRGRTSTAVSSADKVRGLESGVV-P 360
                                         N+SKQKRGRTST VSSADKVRGLESGVV P
Sbjct: 301 ------------------------------NESKQKRGRTSTTVSSADKVRGLESGVVVP 360

Query: 361 LTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGSLPFPPPPPP-IREINHSRYESED 420
           LTSMAAHAVDEEVDIEL++NNKVNETRENTKEASFGSLPFPPPPPP IREINHSRYESED
Sbjct: 361 LTSMAAHAVDEEVDIELEINNKVNETRENTKEASFGSLPFPPPPPPPIREINHSRYESED 389

Query: 421 QNVDVVALDDERARLDNA 436
           QNVDVV LDDERARLDNA
Sbjct: 421 QNVDVVTLDDERARLDNA 389

[Close]

BLAST of Cp4.1LG04g03520 vs. TAIR 10
Match: AT3G21810.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 189.1 bits (479), Expect = 7.4e-48
Identity = 164/457 (35.89%), Postives = 239/457 (52.30%), Query Frame = 0


Query: 4   GSKLFKTKLCVLYQK-GRCSRPSCSFAHGTAELRR-----FAGAHDG-------RREYRG 63
           GS ++KTKLC+L+ K G CSRP+C+FAHG AELRR     F G           RR    
Sbjct: 3   GSSMYKTKLCILFNKTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHNMD 62

Query: 64  NDLRHKLDSRHSPLQERDSRGRHGPR-----DYSSSWSLERQSDRKRRKKEYGDSRNDYS 123
           +DLR +L  + SP + R S  R G R      + +S   E + D+  R+    D R DY+
Sbjct: 63  SDLRDRLGRQFSP-ERRPSLDRSGRRVQRFSGHDNSMPFENRRDKDYRENRRFDERRDYA 122

Query: 124 GNLRISDRSEERDREGKIS-SASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVD 183
           G L++ +R E+R  +G+       + LE QL  ++ D++M    K + E  ++ +  EVD
Sbjct: 123 GGLKVGNRIEDRAEDGRNKFHGYNNVLEEQLKDVEMDVKMLTDDKLRLEASVERKAHEVD 182

Query: 184 SLTSRIQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKRQVYFSQVRLEQLGD 243
            LTSRIQELE+QL +E+++ RRI S  KKFVK +NR+ R QD+LKR    S+ RL++LG+
Sbjct: 183 ILTSRIQELETQLDREKDECRRITSSSKKFVKEYNRFLRAQDDLKR----SEARLQKLGN 242

Query: 244 QLGSDVNKIGANEEDSSINIVSDGEDPGFH---AVSPLHDLQKDNSASKKKHIVQDIAEN 303
           QL + +     N  D  ++IVSD E  G +   A  P ++LQ  +S S+KKH V      
Sbjct: 243 QLSTYLAGSEGNNRDVGLDIVSDEETNGRNLRTACDPHNELQNTSSLSRKKHYVDQYTTK 302

Query: 304 SKRAD--LNKGSKEAV-GRLRRFSRWNAHPSQSVYSKIEAVGNEVNAL-IPTANDSKQKR 363
               D  + +G +E V    +R   WN   S+S   +     N+ + +   ++ +   KR
Sbjct: 303 EPVEDGLIGRGEEEKVENEKKRPPCWNMLSSKSYSEEESGAWNDEDTINRSSSKEDNWKR 362

Query: 364 GRTSTAVSSADKVRGLESGVVPLTSMAAHAVDEEVDIELDVNNKVNETRENTKEASFGS- 423
            R S   S+ DK       V+  TSMAA   D+           V E+ E   EA+ GS 
Sbjct: 363 RRFSIGTSATDK-------VILSTSMAAREFDD-----------VAESEEENPEAANGSP 422

Query: 424 LPFPPPPPPIREINHSRYESEDQNVDVV----ALDDE 430
           L   PPPPP R+  H + + +D N DV+    A DD+
Sbjct: 423 LISLPPPPPFRDA-HVQRDEDDVNGDVMEQKKAYDDD 435

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g03520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93XW7	1.0e-46	35.89	Zinc finger CCCH domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6H7U2	3.4e-45	35.15	Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Cp4.1LG04g03520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530203.1	9.83e-299	99.08	zinc finger CCCH domain-containing protein 40-like isoform X4 [Cucurbita pepo su...	[more]
XP_022930759.1	2.99e-291	96.80	zinc finger CCCH domain-containing protein 40-like isoform X2 [Cucurbita moschat...	[more]
XP_022988786.1	2.55e-290	96.58	zinc finger CCCH domain-containing protein 40-like isoform X1 [Cucurbita maxima]	[more]
XP_023530200.1	5.76e-264	98.73	zinc finger CCCH domain-containing protein 40-like isoform X3 [Cucurbita pepo su...	[more]
XP_023530198.1	9.02e-264	98.73	zinc finger CCCH domain-containing protein 13-like isoform X1 [Cucurbita pepo su...	[more]

BLAST of Cp4.1LG04g03520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESE6	1.45e-291	96.80	zinc finger CCCH domain-containing protein 40-like isoform X2 OS=Cucurbita mosch...	[more]
A0A6J1JI85	1.23e-290	96.58	zinc finger CCCH domain-containing protein 40-like isoform X1 OS=Cucurbita maxim...	[more]
A0A6J1EWA4	8.39e-257	96.20	zinc finger CCCH domain-containing protein 40-like isoform X1 OS=Cucurbita mosch...	[more]
A0A6J1JMK2	3.27e-256	95.96	zinc finger CCCH domain-containing protein 40-like isoform X2 OS=Cucurbita maxim...	[more]
A0A6J1JKJ8	1.46e-248	86.53	zinc finger CCCH domain-containing protein 13-like isoform X3 OS=Cucurbita maxim...	[more]

BLAST of Cp4.1LG04g03520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21810.1	7.4e-48	35.89	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..148
None	No IPR available	COILS	Coil	Coil	coord: 156..190
None	No IPR available	GENE3D	4.10.1000.10		coord: 2..37 e-value: 1.7E-8 score: 35.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 387..407
None	No IPR available	PANTHER	PTHR38160	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40	coord: 4..432
None	No IPR available	PANTHER	PTHR38160:SF1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40	coord: 4..432
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 7..33 score: 12.492763

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g03520.1	Cp4.1LG04g03520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding