Cp4.1LG04g03410 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g03410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L6
Location	Cp4.1LG04: 7182487 .. 7186001 (-)
RNA-Seq Expression	Cp4.1LG04g03410
Synteny	Cp4.1LG04g03410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGACACAAAAAAGTGGAGGAAAAATTTTCGTGGGTGATCATTGTGAAAAGCTTCCACAACAAAACAACACAAACAGGGATAGTATCGAGGTTTCATTAACTAGAAAGGTTGTTTTGGTCATTTTAGGTTTGGATAGCCTCCTCCCACAGCAGACCATATAACTGGTTCTAACTGGTTCTGTCAAACTGGGTGTTCACTGTAATAGGCTATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGGTATAACTCCTAAATTTGCTCTAATAATTGTTTTTCTGGGTTCAAACGTATTAGTGACCAATGGTAGACTTCATATTTTATAATTACAATATTTGCTGAACAAGCTCGGAAGTTCGTCTTAATTGGGTTCCCTTTCTAACCGTGGAGACGTTCTTACTCTTACATATTGCATTTGTGGAGTGTGAAGTCTCGAATAGACCATAATGGTCGGCAAAGGTTTTTCCTTTTGCGTTCAACTTGTTCGTCTTAGTGCACATTTCCTCGGGATGTGAATTTGGGGGTTTACGGTCATCGTTATCTTCTTTTATCTTGCCAAGCCTACAACTCTGATACACAGAGCTAAGTTTTTGGTTTTCTTGATATGAGTCAGCCTTTCTGGAGATTATTGGAGGCTACAGCTCTCGCTATTTGGTTGTACTTTGAGGATATCTTTCCTAGACCTTAGGGAACTTTTTTGGAGAACCATCTTCAATGTATCTAGATGATTTTCTAATTCTAGGAATTTTTCGAAATTATTTCTATTTTCATATTCAAGACTCCAAGTCAATTGGAAAATTTCTTCAAGCTTATCGGCTGATTGAAGTTATGTCTTCCATTTGGGTTTAATTATGAATTAGATAGTATCTTTAATTTCTTTGTCGTGTTTTCTTAGAGAGACGCTCTCCTAAAAACGTGAAATTTTCTACTGGTCATTAAGTCATTAAGGTGTGTAAATTACGCGGATAGAATTTAGAGGAAGTGTCCTTCCATGATCCTCAATTCTAGTTGTGTTTGTATGTTGTCCTTACACTGTGGTTGTATGGTACAAAACAAGTCATCTGCCAGACCACCACCAATGTGGAGATTTCGATTTTCTACTGTTTGAATGTGTTTTTTAGTGCTAAACTATTACACTGTCCTTTGATTGATTTTTGTGTGTTTTGAACCCTTCAGCCATCACTAACAATGGACGTCTACACATTACCTTTCTTTTCTGCTATAGACTGGGCTCCTTATAGTTGGCTTAGAGAGTGTGTCAAGCATAGAGTTTGTTCAATGTTAGTCGTGGTTGTCTTTTATTTAATCATTAAGCTCTTTTTTGTAAGAAGGAAACGTTCTTAAATTTGAAACCATTTTCCTTATTGTGGCTCAGCAATTTTCGGTCTACTTTTTTGGGAGAGAAAAATGGATTCTCTGCTTCGACAGTGCCTGTATCTCATATTGTTCGCTTGAGGAGGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTACAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCACTACTTTATCCACGAGAAGTGAAGATTGAGAGGGATGATGCAGGGATCTTAAGGGTTAAGAAGGCACTGGAGACTAGGAGAGCCAACCAAATGCATGGGCTTTTCAGGTAACCTCCACCTAATTTATTTACAATATTTTCACAGTAACCGATTAAGTTTAATCTTCTGAAACATTTAGCTTTTGTTTTTCTTCCTCTTAAATTTTAGTTTACATGGGTCACTTGCTATATGTATCTTCTCCAAAATTTGGTTGCCTCCTATGAAGATGCCTACTTGCCTCGCTAATCAAGTTGCTCATCTTTTTCATCAATTATGATCTGAAAAGTGCTTTTATGGATGAGAATACTAACGGAGTGGCCAACTCTAGATATTCCCTCCTTATTAATGATTATTTGTGGACGGCTAGAAAGAAACCAACTAAAATATCTTAAAATTCTGAAAACCCAAAACCACTTCATGTTATGAATGCAAACAACCAGCCATTGTTCCTTCATTTGTAATACAGATGAATGATGTCTGATGGAAAAAGAGTAATAAATGATGTACTCTGAGAAAATGCAGCTGTCGTGTCATATATGACCATTTCAACTGATTTCTTCAGGACCCTTACAGACAATATGGTGGTAGGAGTGTCCAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGACGGGCTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACCGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCTCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGATGGTTCGTTATTCATTGTTGGTTTTTCAATCTTTTTGAAATATGTACTAGTCTTTCTAGAATCAGAAAGGATTATTGGCATCATAATTTATTAGAGTTCATTTTTTTTCCTTCTCCCTTTTCTTATTAAATTTTCAGTTTAATATCATCATCACTTTTCAGTTCCTACCACATTTTTATCAGTTGGAAAAATGGCATCGAACTCCTAAAGATCGCCATCTAGTTTATACTTGCGCATGTAGCATGGACTCGGTTTTCTTCCGGTGCTAAGTGTGTCCGTGTGATAAGAACTGAACAATAATATAATTTCTTTTCTGCAACCTATGAATTTCTCTATATGTGCAAAGATAAAGCTACAGCAAGAAGCCACGCACCTAAGATCTGGCCATTTGTGTTAGCTCTCATGGCAGCCTGCTTTCCTACCTGCATATTTACAGCCACCGGACTTCTATGAGCATCTTTAAAATGTTGTTCTTACTTCAATTTGGATTAAACTTTGGCAGAGCCGGTGAAATTTTAAATGTAAAACCTATAAACCAAACTACAGTTTTACATGTACTATAATTGCAGAGAATGTAAGCTGTTATACGAAAGCATGAAAACAAGAGTCGCAATCTTATTTTTCACTTATGCACCAGGAAATTTCACTTGGAACATCATGCAAACTTTCTATGGTCATTCATAGAAGATGTGGAAAAATCAGTACAAACATAAAATTAAGTCCAGGAATCAGGATGCTTCATTTGATGCAATATGGTCATTCATATTCTTGTTCGTTTCTCCTAATCGTCTATTTTACATTTTCCTTATTAGCTATTACAATAAAACAAATACACAGCAGATAAAGGAAATCAAGCGAGGAAGCGATCAAAATTTGAAACACAGAAAGAAAAAAGAAACAACAAAAGTGAATCAGCGTCAAAGAGCTAAGCAAGAAGAGAGAACAATGAAGAACAGAGCACAGATTGTTTCCTCTTCGGACAAATCGTGGCAAAAACAA

mRNA sequence

CGGACACAAAAAAGTGGAGGAAAAATTTTCGTGGGTGATCATTGTGAAAAGCTTCCACAACAAAACAACACAAACAGGGATAGTATCGAGGTTTCATTAACTAGAAAGGTTGTTTTGGTCATTTTAGGTTTGGATAGCCTCCTCCCACAGCAGACCATATAACTGGTTCTAACTGGTTCTGTCAAACTGGGTGTTCACTGTAATAGGCTATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGGTATAACTCCTAAATTTGCTCTAATAATTGTTTTTCTGGGTTCAAACGTATTAGTGACCAATGGTAGACTTCATATTTTATAATTACAATATTTGCTGAACAAGCTCGGAAGTTCGTCTTAATTGGGTTCCCTTTCTAACCGTGGAGACGTTCTTACTCTTACATATTGCATTTGTGGAGTGTGAAGTCTCGAATAGACCATAATGGTCGGCAAAGGTTTTTCCTTTTGCGTTCAACTTGTTCGTCTTAGTGCACATTTCCTCGGGATGTGAATTTGGGGGTTTACGGTCATCGTTATCTTCTTTTATCTTGCCAAGCCTACAACTCTGATACACAGAGCTAAGTTTTTGGTTTTCTTGATATGAGTCAGCCTTTCTGGAGATTATTGGAGGCTACAGCTCTCGCTATTTGGTTGTACTTTGAGGATATCTTTCCTAGACCTTAGGGAACTTTTTTGGAGAACCATCTTCAATGTATCTAGATGATTTTCTAATTCTAGGAATTTTTCGAAATTATTTCTATTTTCATATTCAAGACTCCAAGTCAATTGGAAAATTTCTTCAAGCTTATCGGCTGATTGAAGTTATGTCTTCCATTTGGGTTTAATTATGAATTAGATAGTATCTTTAATTTCTTTGTCGTGTTTTCTTAGAGAGACGCTCTCCTAAAAACGTGAAATTTTCTACTGGTCATTAAGTCATTAAGGTGTGTAAATTACGCGGATAGAATTTAGAGGAAGTGTCCTTCCATGATCCTCAATTCTAGTTGTGTTTGTATGTTGTCCTTACACTGTGGTTGTATGGTACAAAACAAGTCATCTGCCAGACCACCACCAATGTGGAGATTTCGATTTTCTACTGTTTGAATGTGTTTTTTAGTGCTAAACTATTACACTGTCCTTTGATTGATTTTTGTGTGTTTTGAACCCTTCAGCCATCACTAACAATGGACGTCTACACATTACCTTTCTTTTCTGCTATAGACTGGGCTCCTTATAGTTGGCTTAGAGAGTGTGTCAAGCATAGAGTTTGTTCAATGTTAGTCGTGGTTGTCTTTTATTTAATCATTAAGCTCTTTTTTGTAAGAAGGAAACGTTCTTAAATTTGAAACCATTTTCCTTATTGTGGCTCAGCAATTTTCGGTCTACTTTTTTGGGAGAGAAAAATGGATTCTCTGCTTCGACAGTGCCTGTATCTCATATTGTTCGCTTGAGGAGGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTACAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCACTACTTTATCCACGAGAAGTGAAGATTGAGAGGGATGATGCAGGGATCTTAAGGGTTAAGAAGGCACTGGAGACTAGGAGAGCCAACCAAATGCATGGGCTTTTCAGGACCCTTACAGACAATATGGTGGTAGGAGTGTCCAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGACGGGCTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACCGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCTCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGATGCTATTACAATAAAACAAATACACAGCAGATAAAGGAAATCAAGCGAGGAAGCGATCAAAATTTGAAACACAGAAAGAAAAAAGAAACAACAAAAGTGAATCAGCGTCAAAGAGCTAAGCAAGAAGAGAGAACAATGAAGAACAGAGCACAGATTGTTTCCTCTTCGGACAAATCGTGGCAAAAACAA

Coding sequence (CDS)

ATGCATGGGCTTTTCAGGACCCTTACAGACAATATGGTGGTAGGAGTGTCCAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGACGGGCTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACCGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCTCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGA

Protein sequence

MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK

Homology

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BLAST of Cp4.1LG04g03410 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 3.1e-54
Identity = 102/117 (87.18%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRA +EGKDL+L+LGFSHPVRMAIPD LQV
Sbjct: 104 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQV 163

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENT++TVSG DK  +GQFAA+IR WRPPEPYKGKGV+Y DEVVRRKEGKAGKKK
Sbjct: 164 KVEENTKVTVSGRDKSVVGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

[Close]

BLAST of Cp4.1LG04g03410 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.9e-54
Identity = 101/117 (86.32%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IPD L+V
Sbjct: 107 MHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKV 166

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY+DE+VRRKEGKAGKKK
Sbjct: 167 KVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]

BLAST of Cp4.1LG04g03410 vs. ExPASy Swiss-Prot
Match: Q18CH5 (50S ribosomal protein L6 OS=Clostridioides difficile (strain 630) OX=272563 GN=rplF PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.8e-39
Identity = 76/116 (65.52%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           +HGL RTL DNMVVGV+ GFEKKL+L GVGYRA  +GK LV+NLGFSHPV M  P+G+ V
Sbjct: 65  LHGLTRTLLDNMVVGVNTGFEKKLELKGVGYRAQKQGKKLVMNLGFSHPVEMEDPEGITV 124

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 117
           +    T + V G DK  +G +AA IR WR PEPYKGKG+KY DEV+RRKEGK GKK
Sbjct: 125 EAPNQTELIVKGIDKQLVGNYAAKIRAWRKPEPYKGKGIKYVDEVIRRKEGKTGKK 180

[Close]

BLAST of Cp4.1LG04g03410 vs. ExPASy Swiss-Prot
Match: A6TWG7 (50S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826 GN=rplF PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-38
Identity = 76/115 (66.09%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           +HGL RTL  NMV GV+KG+EKKL+LVGVGYRA ++GK LVL+LGFSHPV +  P+GL +
Sbjct: 65  LHGLSRTLVANMVEGVTKGYEKKLELVGVGYRATMQGKKLVLSLGFSHPVEIDQPEGLTI 124

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK 116
           +V   T++TV G DK  +G FAA IR++R PEPYKGKGV+YA EVVRRKEGK GK
Sbjct: 125 EVPSQTQVTVKGIDKQQVGNFAAKIREYRKPEPYKGKGVRYAGEVVRRKEGKTGK 179

[Close]

BLAST of Cp4.1LG04g03410 vs. ExPASy Swiss-Prot
Match: A0PXW1 (50S ribosomal protein L6 OS=Clostridium novyi (strain NT) OX=386415 GN=rplF PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 9.0e-38
Identity = 74/115 (64.35%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           +HGL R L +NMVVGV++G+EK L+LVGVGYRA L+GKDL LNLG+SHPV +    G++ 
Sbjct: 65  LHGLTRALINNMVVGVTQGYEKTLELVGVGYRAQLKGKDLTLNLGYSHPVEIKAVKGVEY 124

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK 116
           KV E T++ VSG DK  +G  AA+IR WR PEPYKGKG+KYA EV+RRKEGK GK
Sbjct: 125 KVPEPTKVVVSGIDKELVGSVAANIRVWRKPEPYKGKGIKYAGEVIRRKEGKTGK 179

[Close]

BLAST of Cp4.1LG04g03410 vs. NCBI nr
Match: KAG7011912.1 (50S ribosomal protein L6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234 bits (596), Expect = 1.88e-77
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQV
Sbjct: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 60

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117

[Close]

BLAST of Cp4.1LG04g03410 vs. NCBI nr
Match: XP_022930652.1 (50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata] >KAG7022869.1 50S ribosomal protein L6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235 bits (600), Expect = 1.72e-76
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV
Sbjct: 110 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 169

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 170 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Cp4.1LG04g03410 vs. NCBI nr
Match: XP_023530191.1 (50S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235 bits (600), Expect = 1.72e-76
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV
Sbjct: 110 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 169

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 170 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Cp4.1LG04g03410 vs. NCBI nr
Match: XP_022930651.1 (50S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 235 bits (600), Expect = 3.19e-76
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV
Sbjct: 129 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 188

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 189 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

[Close]

BLAST of Cp4.1LG04g03410 vs. NCBI nr
Match: XP_022136314.1 (50S ribosomal protein L6, chloroplastic [Momordica charantia])

HSP 1 Score: 234 bits (597), Expect = 4.92e-76
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVS+GFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV
Sbjct: 110 MHGLFRTLTDNMVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 169

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 170 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Cp4.1LG04g03410 vs. ExPASy TrEMBL
Match: A0A6J1ER61 (50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1)

HSP 1 Score: 235 bits (600), Expect = 8.34e-77
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV
Sbjct: 110 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 169

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 170 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Cp4.1LG04g03410 vs. ExPASy TrEMBL
Match: A0A6J1ERI9 (50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1)

HSP 1 Score: 235 bits (600), Expect = 1.54e-76
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV
Sbjct: 129 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 188

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 189 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

[Close]

BLAST of Cp4.1LG04g03410 vs. ExPASy TrEMBL
Match: A0A6J1C3Z5 (50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008030 PE=3 SV=1)

HSP 1 Score: 234 bits (597), Expect = 2.38e-76
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVS+GFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV
Sbjct: 110 MHGLFRTLTDNMVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 169

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 170 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Cp4.1LG04g03410 vs. ExPASy TrEMBL
Match: A0A5D3C9U8 (50S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004180 PE=3 SV=1)

HSP 1 Score: 232 bits (592), Expect = 5.30e-76
Identity = 112/117 (95.73%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDG+Q+
Sbjct: 81  MHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQI 140

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 141 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 197

[Close]

BLAST of Cp4.1LG04g03410 vs. ExPASy TrEMBL
Match: A0A6J1GLT4 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455470 PE=3 SV=1)

HSP 1 Score: 233 bits (595), Expect = 5.65e-76
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQV
Sbjct: 115 MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQV 174

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 117
           KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 175 KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of Cp4.1LG04g03410 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 211.1 bits (536), Expect = 4.9e-55
Identity = 101/117 (86.32%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQV 60
           MHGLFRTLTDNMVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IPD L+V
Sbjct: 107 MHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKV 166

Query: 61  KVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 118
           KVEENTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY+DE+VRRKEGKAGKKK
Sbjct: 167 KVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]

BLAST of Cp4.1LG04g03410 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-20
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 20  FEKKLQLVGVGYRAMLE--GKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCA 79
           F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 80  IGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK 116
           + QFAA++R  +PPEPYKGKG+ Y DEVV++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g03410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82193	3.1e-54	87.18	50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=...	[more]
O23049	6.9e-54	86.32	50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ...	[more]
Q18CH5	2.8e-39	65.52	50S ribosomal protein L6 OS=Clostridioides difficile (strain 630) OX=272563 GN=r...	[more]
A6TWG7	1.4e-38	66.09	50S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826...	[more]
A0PXW1	9.0e-38	64.35	50S ribosomal protein L6 OS=Clostridium novyi (strain NT) OX=386415 GN=rplF PE=3...	[more]

BLAST of Cp4.1LG04g03410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011912.1	1.88e-77	99.15	50S ribosomal protein L6, chloroplastic [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_022930652.1	1.72e-76	100.00	50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata] >KAG7022...	[more]
XP_023530191.1	1.72e-76	100.00	50S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022930651.1	3.19e-76	100.00	50S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata]	[more]
XP_022136314.1	4.92e-76	99.15	50S ribosomal protein L6, chloroplastic [Momordica charantia]	[more]

BLAST of Cp4.1LG04g03410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ER61	8.34e-77	100.00	50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1ERI9	1.54e-76	100.00	50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1C3Z5	2.38e-76	99.15	50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5D3C9U8	5.30e-76	95.73	50S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1GLT4	5.65e-76	98.29	50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Cp4.1LG04g03410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05190.1	4.9e-55	86.32	Ribosomal protein L6 family	[more]
AT2G18400.1	1.0e-20	47.96	ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019906	Ribosomal protein L6, bacterial-type	PRINTS	PR00059	RIBOSOMALL6	coord: 8..33 score: 61.66 coord: 36..52 score: 49.15 coord: 78..99 score: 66.42
IPR019906	Ribosomal protein L6, bacterial-type	TIGRFAM	TIGR03654	TIGR03654	coord: 1..113 e-value: 9.7E-54 score: 179.7
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 20..117 e-value: 6.5E-42 score: 143.6
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 20..113
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 27..101 e-value: 5.8E-20 score: 71.7
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..117
None	No IPR available	PANTHER	PTHR11655:SF38	BNAA10G03220D PROTEIN	coord: 1..117
IPR002358	Ribosomal protein L6, conserved site	PROSITE	PS00525	RIBOSOMAL_L6_1	coord: 91..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g03410.1	Cp4.1LG04g03410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome