Cp4.1LG04g03390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g03390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	B box-type domain-containing protein
Location	Cp4.1LG04: 7256555 .. 7256956 (-)
RNA-Seq Expression	Cp4.1LG04g03390
Synteny	Cp4.1LG04g03390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAAAGGAGTAGAGCAAGAAGCACCACCCCAACCCGCCGTCGAGCGGCGGCGGAGAATCGACAAGACGACGGCTGCGGGCGGGGGAGGCGAGCCAGTGGCGTGCGAGCTCTGCGGTTCGAGGGCGTCGATGTACTGCCAAGCCGACGAAGCGTATCTGTGCGGAAAGTGCGACAAGTCGGTTCATAGCGCTAATTTCTTAGCGCAGCGGCACGTGCGGTGCCTTCTGTGCAGCACGTGCCAGAGCCATACGCAGAGATATCTGTTGGGAGCTTCCATGGAAATGGAGATCCTGCTTCCTAGTATTGTGAGAGGTTTGGTGGAGAGGAATTACCGAAATTATCCCTGTCATCCACGTGATTTTGAGGACAATTTGGTAACTCGCTGCTTGTTTCTTTGA

mRNA sequence

ATGTGCAAAGGAGTAGAGCAAGAAGCACCACCCCAACCCGCCGTCGAGCGGCGGCGGAGAATCGACAAGACGACGGCTGCGGGCGGGGGAGGCGAGCCAGTGGCGTGCGAGCTCTGCGGTTCGAGGGCGTCGATGTACTGCCAAGCCGACGAAGCGTATCTGTGCGGAAAGTGCGACAAGTCGGTTCATAGCGCTAATTTCTTAGCGCAGCGGCACGTGCGGTGCCTTCTGTGCAGCACGTGCCAGAGCCATACGCAGAGATATCTGTTGGGAGCTTCCATGGAAATGGAGATCCTGCTTCCTAGTATTGTGAGAGGTTTGGTGGAGAGGAATTACCGAAATTATCCCTGTCATCCACGTGATTTTGAGGACAATTTGGTAACTCGCTGCTTGTTTCTTTGA

Coding sequence (CDS)

ATGTGCAAAGGAGTAGAGCAAGAAGCACCACCCCAACCCGCCGTCGAGCGGCGGCGGAGAATCGACAAGACGACGGCTGCGGGCGGGGGAGGCGAGCCAGTGGCGTGCGAGCTCTGCGGTTCGAGGGCGTCGATGTACTGCCAAGCCGACGAAGCGTATCTGTGCGGAAAGTGCGACAAGTCGGTTCATAGCGCTAATTTCTTAGCGCAGCGGCACGTGCGGTGCCTTCTGTGCAGCACGTGCCAGAGCCATACGCAGAGATATCTGTTGGGAGCTTCCATGGAAATGGAGATCCTGCTTCCTAGTATTGTGAGAGGTTTGGTGGAGAGGAATTACCGAAATTATCCCTGTCATCCACGTGATTTTGAGGACAATTTGGTAACTCGCTGCTTGTTTCTTTGA

Protein sequence

MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDKSVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPRDFEDNLVTRCLFL

Homology

[Close]

BLAST of Cp4.1LG04g03390 vs. ExPASy Swiss-Prot
Match: Q1G3I2 (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-17
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRID---KTTAAGGGGEPVACELCGSRASMYCQADEAYLCGK 60
           MC+G E+E       E RR  +   +         PV+CELCG  A++YC+AD A+LC K
Sbjct: 1   MCRGFEKE-------EERRSDNGGCQRLCTESHKAPVSCELCGENATVYCEADAAFLCRK 60

Query: 61  CDKSVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSI 104
           CD+ VHSANFLA+RH+R ++C+TC+  T+R L+G +    ++LP I
Sbjct: 61  CDRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDN--FNVVLPEI 97

[Close]

BLAST of Cp4.1LG04g03390 vs. ExPASy Swiss-Prot
Match: Q9LRM4 (B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-16
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGG--------GEPVACELCGSRASMYCQADEA 60
           MC+G+  E       E RR      + GGG          PV CELC   AS++C+AD A
Sbjct: 1   MCRGLNNE-------ESRR------SDGGGCRSLCTRPSVPVRCELCDGDASVFCEADSA 60

Query: 61  YLCGKCDKSVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSI 104
           +LC KCD+ VH ANFLA RHVR +LC++CQ  T+R L+G   +  ++LPS+
Sbjct: 61  FLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLTRRCLVG-DHDFHVVLPSV 97

[Close]

BLAST of Cp4.1LG04g03390 vs. ExPASy Swiss-Prot
Match: Q9LJB7 (B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.2e-11
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 36 CELCGSRASMYCQADEAYLCGKCDKSVHSANFLAQRHVRCLLCSTCQSHTQRYLLG 92
          CELCG+ A ++C AD A+LC  CD   H++NFL  RH R ++C  C+S TQ ++ G
Sbjct: 5  CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSG 60

[Close]

BLAST of Cp4.1LG04g03390 vs. ExPASy Swiss-Prot
Match: O22800 (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 34 VACELCGSR-ASMYCQADEAYLCGKCDKSVHSANFLAQRHVRCLLCSTC 82
          VACE CG R A ++C+AD A LC  CD+ VHSAN L+++HVR  +C  C
Sbjct: 10 VACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNC 58

[Close]

BLAST of Cp4.1LG04g03390 vs. ExPASy Swiss-Prot
Match: Q96502 (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-08
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 35 ACELCGSRA-SMYCQADEAYLCGKCDKSVHSANFLAQRHVRCLLCSTCQSHTQRYLLGA 93
          AC+ C S A ++YC+AD AYLC  CD  VH+AN +A RH R  +C +C+S    +L  A
Sbjct: 15 ACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKA 73

[Close]

BLAST of Cp4.1LG04g03390 vs. NCBI nr
Match: XP_023530332.1 (B-box domain protein 30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281 bits (720), Expect = 7.52e-96
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK
Sbjct: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60

Query: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR 120
           SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR
Sbjct: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR 120

Query: 121 DFEDNLVTRCLFL 133
           DFEDNLVTRCLFL
Sbjct: 121 DFEDNLVTRCLFL 133

[Close]

BLAST of Cp4.1LG04g03390 vs. NCBI nr
Match: KAG6589180.1 (B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022880.1 B-box domain protein 31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272 bits (696), Expect = 3.45e-92
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQE PPQPAVE+RRR DKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK
Sbjct: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60

Query: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR 120
           SVH ANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVR LVERNYRNYPCHPR
Sbjct: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR 120

Query: 121 DFEDNLVTRCLFL 133
           DFEDNLVTRCLFL
Sbjct: 121 DFEDNLVTRCLFL 133

[Close]

BLAST of Cp4.1LG04g03390 vs. NCBI nr
Match: XP_022989503.1 (B-box domain protein 30-like [Cucurbita maxima])

HSP 1 Score: 244 bits (623), Expect = 1.63e-80
Identity = 115/126 (91.27%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQE PPQ AVE+RRR DK TA GGGGEPVACELCGSRASMYCQADEAYLCGKCDK
Sbjct: 1   MCKGVEQEEPPQLAVEQRRRTDKKTAVGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60

Query: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR 120
           SVH ANFLAQRHVRCLLCS CQSH+QRYLLG SMEMEILLPSIVR LVERNYRNYPCHPR
Sbjct: 61  SVHGANFLAQRHVRCLLCSPCQSHSQRYLLGTSMEMEILLPSIVRSLVERNYRNYPCHPR 120

Query: 121 DFEDNL 126
           DFEDNL
Sbjct: 121 DFEDNL 126

[Close]

BLAST of Cp4.1LG04g03390 vs. NCBI nr
Match: KGN43541.1 (hypothetical protein Csa_020490 [Cucumis sativus])

HSP 1 Score: 177 bits (450), Expect = 1.06e-54
Identity = 94/137 (68.61%), Postives = 103/137 (75.18%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQE   Q AV +RR  D    A GGG+PV CELCGSRAS+YC+ADEAYLCGKCDK
Sbjct: 1   MCKGVEQEETTQVAVRQRRTTDD--GAAGGGDPVRCELCGSRASLYCEADEAYLCGKCDK 60

Query: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR 120
           SVHSANFLA RHVRCLLC+TCQSHTQRYLLGASME+ +L PS+V    ERN+ NY C   
Sbjct: 61  SVHSANFLALRHVRCLLCNTCQSHTQRYLLGASMEV-VLPPSLVSR--ERNFLNYHCDSD 120

Query: 121 DFEDN----LVTRCLFL 133
            F  N    L T CLFL
Sbjct: 121 SFVQNCSQVLKTPCLFL 132

[Close]

BLAST of Cp4.1LG04g03390 vs. NCBI nr
Match: KAG6572307.1 (B-box domain protein 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011919.1 B-box domain protein 30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (434), Expect = 3.18e-52
Identity = 90/138 (65.22%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGV QE   Q  V+RRR  +   A GGGG+P  CELCGSRAS+YCQADEAYLC KCDK
Sbjct: 1   MCKGVGQEET-QATVQRRRTTEMARAKGGGGDPEPCELCGSRASLYCQADEAYLCQKCDK 60

Query: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRG-LVERNYRNYPCHP 120
            VHSANFLA RHVRCLLC+TCQ  T+RYLLGASME  ++LPSIV   L+ERN++NY C  
Sbjct: 61  MVHSANFLALRHVRCLLCNTCQRATRRYLLGASME--VVLPSIVSSSLMERNFQNYHCGS 120

Query: 121 RDFEDN----LVTRCLFL 133
            D++ N    L T CLFL
Sbjct: 121 DDYDQNSSQLLQTPCLFL 135

[Close]

BLAST of Cp4.1LG04g03390 vs. ExPASy TrEMBL
Match: A0A6J1JQG3 (B-box domain protein 30-like OS=Cucurbita maxima OX=3661 GN=LOC111486560 PE=4 SV=1)

HSP 1 Score: 244 bits (623), Expect = 7.89e-81
Identity = 115/126 (91.27%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQE PPQ AVE+RRR DK TA GGGGEPVACELCGSRASMYCQADEAYLCGKCDK
Sbjct: 1   MCKGVEQEEPPQLAVEQRRRTDKKTAVGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60

Query: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR 120
           SVH ANFLAQRHVRCLLCS CQSH+QRYLLG SMEMEILLPSIVR LVERNYRNYPCHPR
Sbjct: 61  SVHGANFLAQRHVRCLLCSPCQSHSQRYLLGTSMEMEILLPSIVRSLVERNYRNYPCHPR 120

Query: 121 DFEDNL 126
           DFEDNL
Sbjct: 121 DFEDNL 126

[Close]

BLAST of Cp4.1LG04g03390 vs. ExPASy TrEMBL
Match: A0A0A0K6V9 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044810 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 5.12e-55
Identity = 94/137 (68.61%), Postives = 103/137 (75.18%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQE   Q AV +RR  D    A GGG+PV CELCGSRAS+YC+ADEAYLCGKCDK
Sbjct: 1   MCKGVEQEETTQVAVRQRRTTDD--GAAGGGDPVRCELCGSRASLYCEADEAYLCGKCDK 60

Query: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR 120
           SVHSANFLA RHVRCLLC+TCQSHTQRYLLGASME+ +L PS+V    ERN+ NY C   
Sbjct: 61  SVHSANFLALRHVRCLLCNTCQSHTQRYLLGASMEV-VLPPSLVSR--ERNFLNYHCDSD 120

Query: 121 DFEDN----LVTRCLFL 133
            F  N    L T CLFL
Sbjct: 121 SFVQNCSQVLKTPCLFL 132

[Close]

BLAST of Cp4.1LG04g03390 vs. ExPASy TrEMBL
Match: A0A5A7TAC0 (B-box zinc finger protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004060 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 1.53e-51
Identity = 89/137 (64.96%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQE    P    R+R+     A  GG+PV CELCGSRAS+YC+ADEAYLCGKCDK
Sbjct: 1   MCKGVEQEETKAPV---RQRLTTDDRAARGGDPVRCELCGSRASLYCEADEAYLCGKCDK 60

Query: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR 120
           SVH+ANFLA RHVRCLLC+TCQSHTQRYLLGASME  +++PSIV    ERN+ NY C   
Sbjct: 61  SVHNANFLALRHVRCLLCNTCQSHTQRYLLGASME--VVVPSIVSR--ERNFLNYHCDSD 120

Query: 121 DFEDN----LVTRCLFL 133
            F  N    L T CLFL
Sbjct: 121 GFVQNCSQVLKTPCLFL 130

[Close]

BLAST of Cp4.1LG04g03390 vs. ExPASy TrEMBL
Match: A0A1S3C0U6 (B-box zinc finger protein 21 OS=Cucumis melo OX=3656 GN=LOC103495577 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 1.53e-51
Identity = 89/137 (64.96%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQE    P    R+R+     A  GG+PV CELCGSRAS+YC+ADEAYLCGKCDK
Sbjct: 1   MCKGVEQEETKAPV---RQRLTTDDRAARGGDPVRCELCGSRASLYCEADEAYLCGKCDK 60

Query: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR 120
           SVH+ANFLA RHVRCLLC+TCQSHTQRYLLGASME  +++PSIV    ERN+ NY C   
Sbjct: 61  SVHNANFLALRHVRCLLCNTCQSHTQRYLLGASME--VVVPSIVSR--ERNFLNYHCDSD 120

Query: 121 DFEDN----LVTRCLFL 133
            F  N    L T CLFL
Sbjct: 121 GFVQNCSQVLKTPCLFL 130

[Close]

BLAST of Cp4.1LG04g03390 vs. ExPASy TrEMBL
Match: A0A6J1GNE7 (B-box domain protein 30 OS=Cucurbita moschata OX=3662 GN=LOC111455519 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 9.28e-45
Identity = 77/113 (68.14%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 26  AAGGGGEPVACELCGSRASMYCQADEAYLCGKCDKSVHSANFLAQRHVRCLLCSTCQSHT 85
           A GGGG+P  CELCGSRAS+YCQADEAYLC KCDK VHSANFLA RHVRCLLC+TCQ  T
Sbjct: 4   AKGGGGDPEPCELCGSRASLYCQADEAYLCQKCDKMVHSANFLALRHVRCLLCNTCQRAT 63

Query: 86  QRYLLGASMEMEILLPSIVRGL-VERNYRNYPCHPRDFEDN----LVTRCLFL 133
           +RYLLGASME  ++LPSIV    +ERN++NY C   D++ N    L T CLFL
Sbjct: 64  RRYLLGASME--VVLPSIVSSSSMERNFQNYHCGSDDYDQNSSQLLQTPCLFL 114

[Close]

BLAST of Cp4.1LG04g03390 vs. TAIR 10
Match: AT4G15248.1 (B-box type zinc finger family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-18
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRID---KTTAAGGGGEPVACELCGSRASMYCQADEAYLCGK 60
           MC+G E+E       E RR  +   +         PV+CELCG  A++YC+AD A+LC K
Sbjct: 1   MCRGFEKE-------EERRSDNGGCQRLCTESHKAPVSCELCGENATVYCEADAAFLCRK 60

Query: 61  CDKSVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSI 104
           CD+ VHSANFLA+RH+R ++C+TC+  T+R L+G +    ++LP I
Sbjct: 61  CDRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDN--FNVVLPEI 97

[Close]

BLAST of Cp4.1LG04g03390 vs. TAIR 10
Match: AT3G21890.1 (B-box type zinc finger family protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-17
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGG--------GEPVACELCGSRASMYCQADEA 60
           MC+G+  E       E RR      + GGG          PV CELC   AS++C+AD A
Sbjct: 1   MCRGLNNE-------ESRR------SDGGGCRSLCTRPSVPVRCELCDGDASVFCEADSA 60

Query: 61  YLCGKCDKSVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSI 104
           +LC KCD+ VH ANFLA RHVR +LC++CQ  T+R L+G   +  ++LPS+
Sbjct: 61  FLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLTRRCLVG-DHDFHVVLPSV 97

[Close]

BLAST of Cp4.1LG04g03390 vs. TAIR 10
Match: AT5G54470.1 (B-box type zinc finger family protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-14
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 36 CELCGSRASMYCQADEAYLCGKCDKSVHSANFLAQRHVRCLLCSTCQSHT 86
          CELC   A MYC++D+A LC  CD  VH ANFL  +H+RCLLCS CQSHT
Sbjct: 6  CELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHT 55

[Close]

BLAST of Cp4.1LG04g03390 vs. TAIR 10
Match: AT4G27310.1 (B-box type zinc finger family protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-13
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 36 CELCGSRASMYCQADEAYLCGKCDKSVHSANFLAQRHVRCLLCSTCQSHT 86
          C+LC   A MYC++D+A LC  CD  VH ANFL  +H RCLLCS CQS T
Sbjct: 5  CDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLT 54

[Close]

BLAST of Cp4.1LG04g03390 vs. TAIR 10
Match: AT3G21150.1 (B-box 32 )

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-12
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 36 CELCGSRASMYCQADEAYLCGKCDKSVHSANFLAQRHVRCLLCSTCQSHTQRYLLG 92
          CELCG+ A ++C AD A+LC  CD   H++NFL  RH R ++C  C+S TQ ++ G
Sbjct: 5  CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSG 60

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g03390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3I2	2.6e-17	44.34	B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1	[more]
Q9LRM4	3.8e-16	44.14	B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1	[more]
Q9LJB7	8.2e-11	48.21	B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1	[more]
O22800	1.7e-08	55.10	Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE...	[more]
Q96502	2.2e-08	47.46	Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1...	[more]

BLAST of Cp4.1LG04g03390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530332.1	7.52e-96	100.00	B-box domain protein 30-like [Cucurbita pepo subsp. pepo]	[more]
KAG6589180.1	3.45e-92	96.24	B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG702...	[more]
XP_022989503.1	1.63e-80	91.27	B-box domain protein 30-like [Cucurbita maxima]	[more]
KGN43541.1	1.06e-54	68.61	hypothetical protein Csa_020490 [Cucumis sativus]	[more]
KAG6572307.1	3.18e-52	65.22	B-box domain protein 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG701...	[more]

BLAST of Cp4.1LG04g03390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JQG3	7.89e-81	91.27	B-box domain protein 30-like OS=Cucurbita maxima OX=3661 GN=LOC111486560 PE=4 SV...	[more]
A0A0A0K6V9	5.12e-55	68.61	B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044810 ...	[more]
A0A5A7TAC0	1.53e-51	64.96	B-box zinc finger protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C0U6	1.53e-51	64.96	B-box zinc finger protein 21 OS=Cucumis melo OX=3656 GN=LOC103495577 PE=4 SV=1	[more]
A0A6J1GNE7	9.28e-45	68.14	B-box domain protein 30 OS=Cucurbita moschata OX=3662 GN=LOC111455519 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g03390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15248.1	1.9e-18	44.34	B-box type zinc finger family protein	[more]
AT3G21890.1	2.7e-17	44.14	B-box type zinc finger family protein	[more]
AT5G54470.1	2.1e-14	64.00	B-box type zinc finger family protein	[more]
AT4G27310.1	5.3e-13	60.00	B-box type zinc finger family protein	[more]
AT3G21150.1	5.8e-12	48.21	B-box 32	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 31..77 e-value: 4.6E-11 score: 52.8
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 35..74 e-value: 1.9E-6 score: 27.9
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 31..77 score: 8.730886
None	No IPR available	PANTHER	PTHR31717:SF100	B-BOX ZINC FINGER PROTEIN 29	coord: 33..113
None	No IPR available	PANTHER	PTHR31717	ZINC FINGER PROTEIN CONSTANS-LIKE 10	coord: 33..113
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 35..77 e-value: 5.81588E-15 score: 62.3151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g03390.1	Cp4.1LG04g03390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding