Cp4.1LG04g03170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g03170
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor bHLH162-like
Location	Cp4.1LG04: 7458963 .. 7459872 (+)
RNA-Seq Expression	Cp4.1LG04g03170
Synteny	Cp4.1LG04g03170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGCCATTTCCAGTTCTCGACTTCGTCTTCCTCGGCTGCAAAGATCGAACGGCGAATCGTAGAGAAAAACAGAAGAAACCAGATGAAAACCCTCTGTTCTCAGCTCAATTCCCTTCTCCCAAATCAGGATTCCAAGGTCCTTTCTTATCTTCCTTCACATAAAACAGAGCAAAAACAGAGAAAAACAGAGCAAAAACAGAGCAAAAACAGAGAAAAACAGAGCAAAACAGAGCAAAACAGAGAAAAACAGAGCATCCTCTGTTCTTGAATGAATTTTACATGAAATTAACGAACACCCACGAACCAAAATCTTGATTTGTTGTGTAATTTTATGCAGGAGATTTCATTAGCATTGCCGGATCAAATCGATGAAGCTGTTAAGTACATAAAAGAGCTGGAGAAGAAAGTGAATTTAGCTAAGGAGAAGAAGGAAAAGCTAGAGGGGAAGAACAAGAGCTCCATGAATATCGAGTCTTCGTCGTCGTCGTCGGCTTCGCCTCAGCTCAAAATCCATCAATCTGGTCGAAGCTTGGAGATAATTTTAAGCAGTGGATTGGATAATCAGTATCTCTTCTCTGAAACCATTAGCATTCTTCAAGAAGAAGGCGTTGAAGTTGTGAATGCTAGCTTCTCTGTTTCTGGGAGCTCTGTTTTTCAAACATTCCATGCACAAGTAATATCAATTCTCAAGAACTGATATCATATTGATTATGGTGAGTTTGTTCTTGTTGTTAATGGGTTTTTGTGGTTTGATCATACAGCTCGAGGGCTCGATGATCGAATTCGAGGCAGCGAAGGTGACGGAGAGATTGAAGCGATTGGTTTACGGATCAAACAGCGACATGGAATTGCAGAAGGAGAAGCAATGGTGGGATGAATTCCCTTCTGATGATTTGGATTATTAA

mRNA sequence

ATGGATCGCCATTTCCAGTTCTCGACTTCGTCTTCCTCGGCTGCAAAGATCGAACGGCGAATCGTAGAGAAAAACAGAAGAAACCAGATGAAAACCCTCTGTTCTCAGCTCAATTCCCTTCTCCCAAATCAGGATTCCAAGGAGATTTCATTAGCATTGCCGGATCAAATCGATGAAGCTGTTAAGTACATAAAAGAGCTGGAGAAGAAAGTGAATTTAGCTAAGGAGAAGAAGGAAAAGCTAGAGGGGAAGAACAAGAGCTCCATGAATATCGAGTCTTCGTCGTCGTCGTCGGCTTCGCCTCAGCTCAAAATCCATCAATCTGGTCGAAGCTTGGAGATAATTTTAAGCAGTGGATTGGATAATCAGTATCTCTTCTCTGAAACCATTAGCATTCTTCAAGAAGAAGGCGTTGAAGTTGTGAATGCTAGCTTCTCTGTTTCTGGGAGCTCTGTTTTTCAAACATTCCATGCACAACTCGAGGGCTCGATGATCGAATTCGAGGCAGCGAAGGTGACGGAGAGATTGAAGCGATTGGTTTACGGATCAAACAGCGACATGGAATTGCAGAAGGAGAAGCAATGGTGGGATGAATTCCCTTCTGATGATTTGGATTATTAA

Coding sequence (CDS)

ATGGATCGCCATTTCCAGTTCTCGACTTCGTCTTCCTCGGCTGCAAAGATCGAACGGCGAATCGTAGAGAAAAACAGAAGAAACCAGATGAAAACCCTCTGTTCTCAGCTCAATTCCCTTCTCCCAAATCAGGATTCCAAGGAGATTTCATTAGCATTGCCGGATCAAATCGATGAAGCTGTTAAGTACATAAAAGAGCTGGAGAAGAAAGTGAATTTAGCTAAGGAGAAGAAGGAAAAGCTAGAGGGGAAGAACAAGAGCTCCATGAATATCGAGTCTTCGTCGTCGTCGTCGGCTTCGCCTCAGCTCAAAATCCATCAATCTGGTCGAAGCTTGGAGATAATTTTAAGCAGTGGATTGGATAATCAGTATCTCTTCTCTGAAACCATTAGCATTCTTCAAGAAGAAGGCGTTGAAGTTGTGAATGCTAGCTTCTCTGTTTCTGGGAGCTCTGTTTTTCAAACATTCCATGCACAACTCGAGGGCTCGATGATCGAATTCGAGGCAGCGAAGGTGACGGAGAGATTGAAGCGATTGGTTTACGGATCAAACAGCGACATGGAATTGCAGAAGGAGAAGCAATGGTGGGATGAATTCCCTTCTGATGATTTGGATTATTAA

Protein sequence

MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGSNSDMELQKEKQWWDEFPSDDLDY

Homology

[Close]

BLAST of Cp4.1LG04g03170 vs. ExPASy Swiss-Prot
Match: F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-18
Identity = 67/184 (36.41%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 9   TSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELE 68
           +++  +  ++R+ VEKNRR QMK+L S+L SLLP+  S E  L LPDQ+DEA  YIK+L+
Sbjct: 6   SNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKLQ 65

Query: 69  KKVNLAKEKKEKLEGKNK-SSMNIESSSSSSAS---------PQLKIHQSGRSLEIILSS 128
             V   +E+K  L        +N   SSS S+S         P+++I ++G    I L +
Sbjct: 66  VNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVT 125

Query: 129 GLDNQYLFSETISILQEE-GVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEA-AKVTERL 181
            L+++++F E I +L EE G E+ +A +S+   +VF T H ++E    ++ A +++ ERL
Sbjct: 126 SLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEH--DYGARSQIPERL 185

[Close]

BLAST of Cp4.1LG04g03170 vs. ExPASy Swiss-Prot
Match: F4I4E1 (Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 53/183 (28.96%), Postives = 93/183 (50.82%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           M R  +    +SS+ + +R + EK+RR +MK     L S+L +  S    L +P  ID+A
Sbjct: 1   MGRAREIGEGNSSSLREQRNLREKDRRMRMK----HLFSILSSHVSPTRKLPVPHLIDQA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 120
             Y+ +L++ VN  KEKK  L      ++       S   P+L I     ++E+ L   L
Sbjct: 61  TSYMIQLKENVNYLKEKKRTLLQGELGNL----YEGSFLLPKLSIRSRDSTIEMNLIMDL 120

Query: 121 D-NQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRL 180
           +  + +  E +SI +EEG +V++A+          T  AQ   S I  + +++ ER++++
Sbjct: 121 NMKRVMLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKI 175

Query: 181 VYG 183
           +YG
Sbjct: 181 IYG 175

[Close]

BLAST of Cp4.1LG04g03170 vs. ExPASy Swiss-Prot
Match: Q9XIJ1 (Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.0e-07
Identity = 52/181 (28.73%), Postives = 92/181 (50.83%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           M+R  +    S+S+ + +R + EK RR +MK     L S+L +  S    L +P  ID+A
Sbjct: 1   MERAREIGEGSASSLREQRNLREKERRMRMK----HLFSILSSHVSPTRRLPVPQLIDQA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 120
           V Y+ +L++KVN   E K ++ G    +     S  SS  P+L I      +E+ L   L
Sbjct: 61  VSYMIQLKEKVNYLNEMKRRMLGGEVKN----RSEGSSLLPKLSIRSLDSIIEMNLVMDL 120

Query: 121 DNQ-YLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRL 180
           + +  +  + +S+ +EEG +V++A+        F T  AQ     I  + +++ ERL+ +
Sbjct: 121 NMKGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERLRDI 173

[Close]

BLAST of Cp4.1LG04g03170 vs. ExPASy Swiss-Prot
Match: A2WZ60 (Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. indica OX=39946 GN=IRO2 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04
Identity = 50/182 (27.47%), Postives = 87/182 (47.80%), Query Frame = 0


Query: 8   STSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKEL 67
           S  S S  K+     E++RR Q+  L S L +LLP+ D  +  L++P  +   +KYI EL
Sbjct: 62  SGGSGSHRKLSHNAYERDRRKQLNELYSSLRALLPDADHTK-KLSIPTTVSRVLKYIPEL 121

Query: 68  EKKVNLAKEKKEKLEGKNKSSMN---IESSSSSSASPQLKIHQSGRSLEI-----ILSSG 127
           +K+V   + KK++L   + ++     + S   S     +        +EI     +LS+ 
Sbjct: 122 QKQVENLERKKKELTTTSTTNCKPGVLGSQLMSEGMAPIVSATCINDMEIMVQVSLLSNV 181

Query: 128 LDNQYLFSETISILQEEGVEVVNASFSVS-GSSVFQTFHAQLEGSMIEFEAAKVTERLKR 181
             +    S+ I +L+ EG+  +++S S   G+  F + H Q     I  E     ERL++
Sbjct: 182 AGSVLPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQRSEGTINEECPAFCERLEK 241

[Close]

BLAST of Cp4.1LG04g03170 vs. ExPASy Swiss-Prot
Match: Q0JFZ0 (Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. japonica OX=39947 GN=IRO2 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04
Identity = 50/182 (27.47%), Postives = 87/182 (47.80%), Query Frame = 0


Query: 8   STSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKEL 67
           S  S S  K+     E++RR Q+  L S L +LLP+ D  ++S  +P  +   +KYI EL
Sbjct: 62  SGGSGSHRKLSHNAYERDRRKQLNELYSSLRALLPDADHTKLS--IPTTVSRVLKYIPEL 121

Query: 68  EKKVNLAKEKKEKLEGKNKSSMN---IESSSSSSASPQLKIHQSGRSLEI-----ILSSG 127
           +K+V   + KK++L   + ++     + S   S     +        +EI     +LS+ 
Sbjct: 122 QKQVENLERKKKELTTTSTTNCKPGVLGSQLMSEGMAPIVSATCINDMEIMVQVSLLSNV 181

Query: 128 LDNQYLFSETISILQEEGVEVVNASFSVS-GSSVFQTFHAQLEGSMIEFEAAKVTERLKR 181
             +    S+ I +L+ EG+  +++S S   G+  F + H Q     I  E     ERL++
Sbjct: 182 AGSVLPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQRSEGTINEECPAFCERLEK 241

[Close]

BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match: XP_023531689.1 (transcription factor bHLH162-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379 bits (974), Expect = 1.73e-131
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA
Sbjct: 46  MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 105

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 120
           VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL
Sbjct: 106 VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 165

Query: 121 DNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLV 180
           DNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLV
Sbjct: 166 DNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLV 225

Query: 181 YGSNSDMELQKEKQWWDEFPSDDLDY 206
           YGSNSDMELQKEKQWWDEFPSDDLDY
Sbjct: 226 YGSNSDMELQKEKQWWDEFPSDDLDY 251

[Close]

BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match: XP_022930718.1 (transcription factor bHLH162-like [Cucurbita moschata])

HSP 1 Score: 374 bits (960), Expect = 3.01e-129
Identity = 206/209 (98.56%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA
Sbjct: 50  MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 109

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSS---ASPQLKIHQSGRSLEIILS 120
           VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSS   ASPQLKIHQSGRSLEIILS
Sbjct: 110 VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 169

Query: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180
           SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK
Sbjct: 170 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 229

Query: 181 RLVYGSNSDMELQKEKQWWDEFPSDDLDY 206
           RLVYGSNSDMELQKEKQWWDEFPSDDLDY
Sbjct: 230 RLVYGSNSDMELQKEKQWWDEFPSDDLDY 258

[Close]

BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match: XP_022988952.1 (transcription factor bHLH162-like [Cucurbita maxima])

HSP 1 Score: 371 bits (952), Expect = 7.90e-129
Identity = 200/206 (97.09%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MDRHFQFSTSSSSAAKIERRI+EKNRRNQMKTLCSQLNSLLPNQDSKEISL+LPDQIDEA
Sbjct: 1   MDRHFQFSTSSSSAAKIERRIIEKNRRNQMKTLCSQLNSLLPNQDSKEISLSLPDQIDEA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 120
           VKYIKELEKKVNLAKEKKEKLEGKNKS MNIESSSS SASPQLKIHQSGRSLEIILSSGL
Sbjct: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSPMNIESSSSCSASPQLKIHQSGRSLEIILSSGL 120

Query: 121 DNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLV 180
           DNQYLFSETISILQ+EGVEVVNASFSVSGSSVFQTFHAQLEGS+IEFEAAKVTERLKRLV
Sbjct: 121 DNQYLFSETISILQKEGVEVVNASFSVSGSSVFQTFHAQLEGSIIEFEAAKVTERLKRLV 180

Query: 181 YGSNSDMELQKEKQWWDEFPSDDLDY 206
           YGSNSDMELQKEKQWWDEFPSDDLDY
Sbjct: 181 YGSNSDMELQKEKQWWDEFPSDDLDY 206

[Close]

BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match: KAG6589225.1 (Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022925.1 Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362 bits (929), Expect = 2.53e-125
Identity = 202/209 (96.65%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MDRHFQFSTS   AAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA
Sbjct: 1   MDRHFQFSTS---AAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSS---ASPQLKIHQSGRSLEIILS 120
           VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSS   ASPQLKIHQSGRSLEIILS
Sbjct: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 120

Query: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180
           SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK
Sbjct: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180

Query: 181 RLVYGSNSDMELQKEKQWWDEFPSDDLDY 206
           RLVYGSNSDMELQKEKQWWDEFPS+DLDY
Sbjct: 181 RLVYGSNSDMELQKEKQWWDEFPSNDLDY 206

[Close]

BLAST of Cp4.1LG04g03170 vs. NCBI nr
Match: XP_038888628.1 (transcription factor bHLH162-like [Benincasa hispida])

HSP 1 Score: 302 bits (774), Expect = 1.07e-101
Identity = 162/206 (78.64%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MD +FQFS SSSSAAKIERRI+EKNRRNQMK LCSQLNSLLPN DSK+ISL LPDQIDEA
Sbjct: 1   MDPNFQFSASSSSAAKIERRIIEKNRRNQMKNLCSQLNSLLPNHDSKDISLPLPDQIDEA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSS-ASPQLKIHQSGRSLEIILSSG 120
           +KYIKELEKKV+ AKEKK +L+GKNKSS+N++SSSSSS ASPQL IHQ G+S+EI+LSSG
Sbjct: 61  IKYIKELEKKVSSAKEKKNQLQGKNKSSINMDSSSSSSSASPQLNIHQMGKSVEIVLSSG 120

Query: 121 LDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRL 180
           LDNQYLF ET+ ILQEEG EV+NASFSVSG+SVF T HAQL  SM+EF   K TERLKRL
Sbjct: 121 LDNQYLFCETLRILQEEGTEVINASFSVSGNSVFHTIHAQLGDSMVEFGVTKATERLKRL 180

Query: 181 VYGSNSDMELQKEKQWWDEFPSDDLD 205
           VYGSNSD+E+QKEKQWWDEFP ++ D
Sbjct: 181 VYGSNSDVEVQKEKQWWDEFPCENWD 206

[Close]

BLAST of Cp4.1LG04g03170 vs. ExPASy TrEMBL
Match: A0A6J1EW58 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111437113 PE=4 SV=1)

HSP 1 Score: 374 bits (960), Expect = 1.46e-129
Identity = 206/209 (98.56%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA
Sbjct: 50  MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 109

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSS---ASPQLKIHQSGRSLEIILS 120
           VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSS   ASPQLKIHQSGRSLEIILS
Sbjct: 110 VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 169

Query: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180
           SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK
Sbjct: 170 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 229

Query: 181 RLVYGSNSDMELQKEKQWWDEFPSDDLDY 206
           RLVYGSNSDMELQKEKQWWDEFPSDDLDY
Sbjct: 230 RLVYGSNSDMELQKEKQWWDEFPSDDLDY 258

[Close]

BLAST of Cp4.1LG04g03170 vs. ExPASy TrEMBL
Match: A0A6J1JEF7 (transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111486157 PE=4 SV=1)

HSP 1 Score: 371 bits (952), Expect = 3.82e-129
Identity = 200/206 (97.09%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MDRHFQFSTSSSSAAKIERRI+EKNRRNQMKTLCSQLNSLLPNQDSKEISL+LPDQIDEA
Sbjct: 1   MDRHFQFSTSSSSAAKIERRIIEKNRRNQMKTLCSQLNSLLPNQDSKEISLSLPDQIDEA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 120
           VKYIKELEKKVNLAKEKKEKLEGKNKS MNIESSSS SASPQLKIHQSGRSLEIILSSGL
Sbjct: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSPMNIESSSSCSASPQLKIHQSGRSLEIILSSGL 120

Query: 121 DNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLV 180
           DNQYLFSETISILQ+EGVEVVNASFSVSGSSVFQTFHAQLEGS+IEFEAAKVTERLKRLV
Sbjct: 121 DNQYLFSETISILQKEGVEVVNASFSVSGSSVFQTFHAQLEGSIIEFEAAKVTERLKRLV 180

Query: 181 YGSNSDMELQKEKQWWDEFPSDDLDY 206
           YGSNSDMELQKEKQWWDEFPSDDLDY
Sbjct: 181 YGSNSDMELQKEKQWWDEFPSDDLDY 206

[Close]

BLAST of Cp4.1LG04g03170 vs. ExPASy TrEMBL
Match: A0A5D3C788 (Transcription factor bHLH55-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003340 PE=4 SV=1)

HSP 1 Score: 293 bits (750), Expect = 2.11e-98
Identity = 156/205 (76.10%), Postives = 180/205 (87.80%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MD +FQFS SSS+AAKIERRI+EKNRRNQMK LC QL SL+P QDSKE+SLALPDQID A
Sbjct: 1   MDPNFQFSASSSTAAKIERRIIEKNRRNQMKNLCDQLKSLVPQQDSKEVSLALPDQIDVA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 120
           +KYIK+LEKKVN AKEKK +L+GKNKS++N++SSSSSS  PQLKI+Q G+SLEI+LSSG+
Sbjct: 61  IKYIKDLEKKVNSAKEKKNRLQGKNKSAINMDSSSSSS--PQLKINQMGKSLEIVLSSGI 120

Query: 121 DNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLV 180
           DNQYL  ET+ ILQEEG+EVVNASFSVSG SVF T HA+L  SM+EF   K TERLKRLV
Sbjct: 121 DNQYLLCETLRILQEEGIEVVNASFSVSGKSVFHTIHAELGDSMVEFGTTKATERLKRLV 180

Query: 181 YGSNSDMELQKEKQWWDEFPSDDLD 205
           YGSNSD+ELQKEKQWWDEFPS++ D
Sbjct: 181 YGSNSDVELQKEKQWWDEFPSENWD 203

[Close]

BLAST of Cp4.1LG04g03170 vs. ExPASy TrEMBL
Match: A0A1S3C1C4 (transcription factor bHLH55-like OS=Cucumis melo OX=3656 GN=LOC103495505 PE=4 SV=1)

HSP 1 Score: 285 bits (728), Expect = 4.88e-95
Identity = 152/202 (75.25%), Postives = 177/202 (87.62%), Query Frame = 0


Query: 4   HFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKY 63
           +FQFS SSS+AAKIERRI+EKNRRNQMK LC QL SL+P Q SKE+SLALPDQID A+KY
Sbjct: 5   NFQFSASSSTAAKIERRIIEKNRRNQMKNLCDQLKSLVPQQYSKEVSLALPDQIDVAIKY 64

Query: 64  IKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGLDNQ 123
           IK+LEKKVN AKEKK +L+GKNKS++N++SSSSSS  PQLKI+Q G+SLEI+LSSG+DNQ
Sbjct: 65  IKDLEKKVNSAKEKKNRLQGKNKSAINMDSSSSSS--PQLKINQMGKSLEIVLSSGIDNQ 124

Query: 124 YLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGS 183
           YL  ET+ ILQEEG+EVVNASFSVSG SVF T HA+L  SM+EF   K TERLKRLVYGS
Sbjct: 125 YLLCETLRILQEEGIEVVNASFSVSGKSVFHTIHAELGDSMVEFGTTKATERLKRLVYGS 184

Query: 184 NSDMELQKEKQWWDEFPSDDLD 205
           NSD+ELQKEKQWW+EFPS++ D
Sbjct: 185 NSDVELQKEKQWWEEFPSENWD 204

[Close]

BLAST of Cp4.1LG04g03170 vs. ExPASy TrEMBL
Match: A0A0A0K2C9 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048070 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 2.59e-91
Identity = 152/210 (72.38%), Postives = 179/210 (85.24%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MD +FQFS SSS+AAKIERRI+EKNRRNQMK LC QL SL+P QDSKE+SLALPDQID A
Sbjct: 1   MDPNFQFSASSSTAAKIERRIIEKNRRNQMKNLCDQLKSLVPQQDSKEVSLALPDQIDVA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSAS---PQLKIHQSGRSLEIILS 120
           +KYIK+LEK+VN AKEKK +L+GKNKS++N++SSSSSS+S   PQLKI+Q G+SLEIILS
Sbjct: 61  IKYIKDLEKRVNSAKEKKNRLQGKNKSAINMDSSSSSSSSSSSPQLKINQMGKSLEIILS 120

Query: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180
           SG DNQYL  ET+ IL+EEG EVV+ASFSVSG+SVF T HAQL  SM+EF   K TERL 
Sbjct: 121 SGNDNQYLLCETLRILEEEGTEVVSASFSVSGNSVFHTIHAQLGDSMVEFGMTKATERLT 180

Query: 181 RLVYGSNSDMELQKE-KQWWDEFPSDDLDY 206
           RLVY SNSD+ELQKE KQWW EFPS++ ++
Sbjct: 181 RLVYRSNSDVELQKEEKQWWKEFPSENWEF 210

[Close]

BLAST of Cp4.1LG04g03170 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-19
Identity = 67/184 (36.41%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 9   TSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELE 68
           +++  +  ++R+ VEKNRR QMK+L S+L SLLP+  S E  L LPDQ+DEA  YIK+L+
Sbjct: 6   SNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKLQ 65

Query: 69  KKVNLAKEKKEKLEGKNK-SSMNIESSSSSSAS---------PQLKIHQSGRSLEIILSS 128
             V   +E+K  L        +N   SSS S+S         P+++I ++G    I L +
Sbjct: 66  VNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVT 125

Query: 129 GLDNQYLFSETISILQEE-GVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEA-AKVTERL 181
            L+++++F E I +L EE G E+ +A +S+   +VF T H ++E    ++ A +++ ERL
Sbjct: 126 SLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEH--DYGARSQIPERL 185

[Close]

BLAST of Cp4.1LG04g03170 vs. TAIR 10
Match: AT1G10585.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-09
Identity = 53/183 (28.96%), Postives = 93/183 (50.82%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           M R  +    +SS+ + +R + EK+RR +MK     L S+L +  S    L +P  ID+A
Sbjct: 1   MGRAREIGEGNSSSLREQRNLREKDRRMRMK----HLFSILSSHVSPTRKLPVPHLIDQA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 120
             Y+ +L++ VN  KEKK  L      ++       S   P+L I     ++E+ L   L
Sbjct: 61  TSYMIQLKENVNYLKEKKRTLLQGELGNL----YEGSFLLPKLSIRSRDSTIEMNLIMDL 120

Query: 121 D-NQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRL 180
           +  + +  E +SI +EEG +V++A+          T  AQ   S I  + +++ ER++++
Sbjct: 121 NMKRVMLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKI 175

Query: 181 VYG 183
           +YG
Sbjct: 181 IYG 175

[Close]

BLAST of Cp4.1LG04g03170 vs. TAIR 10
Match: AT1G10586.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.5e-08
Identity = 52/181 (28.73%), Postives = 92/181 (50.83%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           M+R  +    S+S+ + +R + EK RR +MK     L S+L +  S    L +P  ID+A
Sbjct: 1   MERAREIGEGSASSLREQRNLREKERRMRMK----HLFSILSSHVSPTRRLPVPQLIDQA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 120
           V Y+ +L++KVN   E K ++ G    +     S  SS  P+L I      +E+ L   L
Sbjct: 61  VSYMIQLKEKVNYLNEMKRRMLGGEVKN----RSEGSSLLPKLSIRSLDSIIEMNLVMDL 120

Query: 121 DNQ-YLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRL 180
           + +  +  + +S+ +EEG +V++A+        F T  AQ     I  + +++ ERL+ +
Sbjct: 121 NMKGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERLRDI 173

[Close]

BLAST of Cp4.1LG04g03170 vs. TAIR 10
Match: AT2G41240.2 (basic helix-loop-helix protein 100 )

HSP 1 Score: 44.7 bits (104), Expect = 1.1e-04
Identity = 45/167 (26.95%), Postives = 85/167 (50.90%), Query Frame = 0


Query: 16  KIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELEKKVNLAK 75
           K+     E+ RR ++ T+ S L S LP  +  ++S++    + +A+KYI EL+++V    
Sbjct: 63  KLNHNASERERRKKINTMFSSLRSCLPPTNQTKLSVSA--TVSQALKYIPELQEQVKKLM 122

Query: 76  EKKEKL-------------EGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGLDN 135
           +KKE+L             +  +KS   + S +S+ +S +L    S   + + +SS    
Sbjct: 123 KKKEELSFQISGQRDLVYTDQNSKSEEGVTSYASTVSSTRL----SETEVMVQISSLQTE 182

Query: 136 QYLFSETISILQEEGVEVVNASFSVS-GSSVFQTFHAQLEGSMIEFE 169
           +  F   +S ++E+G+ +V AS S S G  +F + H Q++   +  E
Sbjct: 183 KCSFGNVLSGVEEDGLVLVGASSSRSHGERLFYSMHLQIKNGQVNSE 223

[Close]

BLAST of Cp4.1LG04g03170 vs. TAIR 10
Match: AT2G41240.1 (basic helix-loop-helix protein 100 )

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04
Identity = 48/169 (28.40%), Postives = 85/169 (50.30%), Query Frame = 0


Query: 16  KIERRIVEKNRRNQMKTLCSQLNSLLP--NQDSKEISLALPDQIDEAVKYIKELEKKVNL 75
           K+     E+ RR ++ T+ S L S LP  NQ  K   L++   + +A+KYI EL+++V  
Sbjct: 63  KLNHNASERERRKKINTMFSSLRSCLPPTNQTKK---LSVSATVSQALKYIPELQEQVKK 122

Query: 76  AKEKKEKL-------------EGKNKSSMNIESSSSSSASPQLKIHQSGRSLEIILSSGL 135
             +KKE+L             +  +KS   + S +S+ +S +L    S   + + +SS  
Sbjct: 123 LMKKKEELSFQISGQRDLVYTDQNSKSEEGVTSYASTVSSTRL----SETEVMVQISSLQ 182

Query: 136 DNQYLFSETISILQEEGVEVVNASFSVS-GSSVFQTFHAQLEGSMIEFE 169
             +  F   +S ++E+G+ +V AS S S G  +F + H Q++   +  E
Sbjct: 183 TEKCSFGNVLSGVEEDGLVLVGASSSRSHGERLFYSMHLQIKNGQVNSE 224

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g03170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIJ7	6.3e-18	36.41	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]
F4I4E1	1.0e-07	28.96	Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=...	[more]
Q9XIJ1	5.0e-07	28.73	Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=...	[more]
A2WZ60	1.0e-04	27.47	Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. indica OX=399...	[more]
Q0JFZ0	1.0e-04	27.47	Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of Cp4.1LG04g03170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531689.1	1.73e-131	100.00	transcription factor bHLH162-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930718.1	3.01e-129	98.56	transcription factor bHLH162-like [Cucurbita moschata]	[more]
XP_022988952.1	7.90e-129	97.09	transcription factor bHLH162-like [Cucurbita maxima]	[more]
KAG6589225.1	2.53e-125	96.65	Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma...	[more]
XP_038888628.1	1.07e-101	78.64	transcription factor bHLH162-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG04g03170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EW58	1.46e-129	98.56	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111437113 ...	[more]
A0A6J1JEF7	3.82e-129	97.09	transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111486157 PE...	[more]
A0A5D3C788	2.11e-98	76.10	Transcription factor bHLH55-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3C1C4	4.88e-95	75.25	transcription factor bHLH55-like OS=Cucumis melo OX=3656 GN=LOC103495505 PE=4 SV...	[more]
A0A0A0K2C9	2.59e-91	72.38	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048070 PE=4 S...	[more]

BLAST of Cp4.1LG04g03170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20970.1	4.5e-19	36.41	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	7.1e-09	28.96	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.1	3.5e-08	28.73	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G41240.2	1.1e-04	26.95	basic helix-loop-helix protein 100	[more]
AT2G41240.1	1.4e-04	28.40	basic helix-loop-helix protein 100	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..102
None	No IPR available	PANTHER	PTHR13935:SF63	HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN	coord: 10..187
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 18..68 e-value: 7.4E-6 score: 25.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 14..67 score: 11.318499
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 14..96 e-value: 8.8E-9 score: 37.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 16..85
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 10..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g03170.1	Cp4.1LG04g03170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0090575	RNA polymerase II transcription regulator complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity