Cp4.1LG04g03060 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g03060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDNA-binding bromodomain-containing protein
LocationCp4.1LG04: 7444583 .. 7446767 (-)
RNA-Seq ExpressionCp4.1LG04g03060
SyntenyCp4.1LG04g03060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCCAAACCAAACTGTCATTAAGGGGACGGGGCAGTCCCTTTGGGTTACTATGTTCATACGGTTCATTCATCCATTTATTGGCGCGTGGTGAACACGTTCGACCAGAAACCCTTTGGATTGGTCCACAGAGTCAGTTTGGCACACAGGTGAGGAGGTTCGCGTGAAGTTTCTTGAGCTTCTTTTGCTTCTTTGTTTAAGCTTCATCACTGGGCGAGCTGCTTTCTTAACGCCGAAAGAGGAAGGGAAAGGGAAACTCTCCATCAAAGGAGAAAGCTCTGAAAATCACAGAAGATTAACAGATTTGGAAACCGGGAATGGCAGACAATAAGGAAGAAGACCCAGAAACAATCGCTCCTCAATGGTACTCTTTGATTATGAGAGTGATGAGCAAAAGAAGAACATGGGTATGTCTTTTTGTTCTGGTTTATGCCCTTCTTTTGTCTTCTTCCTGGAATTTCCTTGTTTCAATACTCTCTTGGTACAAATCCCAAGTGGAAGTTTCTTCTTCTTCTTCCTCTTCTTTTGGGTGGCCTGCGATTTATGCTTCTCTGCTTCTTGGGGCAGTTTTTGGGGTTCTTTCCATGGTGGCTGCACTGGCTGTCATGGTGCCGGCCACCCTTGTAACTTGGATCACCATTGTTGTGCTGCTTTACTTCTTTGGGAAGCCTAAGAGGGCGTTGGTGGTGGAGGGGAGGAAGATTACTAAGGAGATTTTTGGGGTTGTGGCTAAGATTTTGTTGAAGGAAGGGAATTTGGTGGCTGCTGTTTGTGCTGTTTTGGGGTACTTTGCTTTGTTTAGGAAGAGTAATGAGAGTTAGAGGCTAATTTTGGTGGGATTGCGGGAGGATTTGGGGGTTTTGATCAAATGGGTATCTCAGATTTGTGGTGATTTTGGTGTTGTTTGTTCATACTTGTAGGTGAAGCGCAATGCCTGGTTTTAATGGTTTAGATCTTTCTTGTAACTTTAGGGTTTATGGGTTCATATGGATCATTGCTTTCTCTCCAGAAATGCTTCATAAACTTGGGATTTACAGATCTCTTTTCTTTGCTAATGGATGGAATACAGGGAGTTTATACTGATTCATGTAATGAAATGGTCGATTTTAGAACATGGGTTGTCTGGGATTTGTTCATAATGATATCACTCAACTGTTTGATTCAAAGATATGATGGTTCTGTTGTCATGGAGCAAACTTGGCTTGAAGAACAAGATAAGAACAGTTCTTTCTTTGTTTTGAAAGAAAATGATCTTCATTGAACTGTTTTGGAAGAACATGAACTTGTTTATCTGTCTTAGAACAGTTCTTTTCTTTGTTTTTGTAAAGAAATTCAGCTCAGAAAGGCTTACAAATATAGCTTGCTGATAGTCTGGGTTTGAACATGTTGATGTATCATTGCGGCATTCTATCAAACACCTTGTATGCAGAAAGTTGAGTTCTTCACAAAGGGTTCTCTCTCAATGTTCATCCCCGAAAGTTCTGATAATTTGTGTTTGTATTGGTGTTCTTCCTTCATCTTAGATTGAATGCTTAAGATCGACCTTAACAATGGCAGAATCCACATTCCATTTTCATATTTTCACAGTCAGAAACCAACATTACAGATCTTGGCCCAGTTTTGAAGAACAAAAACTGAAAAAGAAAAGCATTAGAAACTAATAGTCTATACTCAGATTCCGAAGTCAATTTGATCTACGCTTATTAGCTAATCTGGGAGAAGTTCTAGTGGCAGAAATTGAATCATTTTCCAGTTTTTTTCCACTACTCTTCCCCTTTGTACTTTGATCGTTAATCTCCTCAACAATCTTCATTACAGATTCATCGATCCCATTGACTTCCAAATTTCGATCCCTCGAACCTTTCAACTGGTTCTTCTTCCCCTCCACAGCGACTCGATCGAAATCATCTCCCAGCTTCTTCACCAATCTCCTCTTCACAACCCTAATTTCTTCCTTGTGCTCACCAACATCATCCTCCTCAGCGTCAAACAATGGCATCAATCGCCGTCTCTTAGTTGCAATTGGCACTGGCGGTGGTGATACTGATTTCGACTTCTTCGACCGGCGAACAGCATCGTCTCTGAGATCTGAGTCAGATCTCTCTGGCGTCTCTACTTTCTTCTTCTTAGCAATCTTCTCACGCTCAGTTCGAAGCTTGTTGATATTGCCTTCGATTCGACCCTGA

mRNA sequence

AGCCCAAACCAAACTGTCATTAAGGGGACGGGGCAGTCCCTTTGGGTTACTATGTTCATACGGTTCATTCATCCATTTATTGGCGCGTGGTGAACACGTTCGACCAGAAACCCTTTGGATTGGTCCACAGAGTCAGTTTGGCACACAGGTGAGGAGGTTCGCGTGAAGTTTCTTGAGCTTCTTTTGCTTCTTTGTTTAAGCTTCATCACTGGGCGAGCTGCTTTCTTAACGCCGAAAGAGGAAGGGAAAGGGAAACTCTCCATCAAAGGAGAAAGCTCTGAAAATCACAGAAGATTAACAGATTTGGAAACCGGGAATGGCAGACAATAAGGAAGAAGACCCAGAAACAATCGCTCCTCAATGGTACTCTTTGATTATGAGAGTGATGAGCAAAAGAAGAACATGGGTGAAGCGCAATGCCTGGGTTTATGGGTTCATATGGATCATTGCTTTCTCTCCAGAAATGCTTCATAAACTTGGGATTTACAGATCTCTTTTCTTTGCTAATGGATGGAATACAGGGAATTCATCGATCCCATTGACTTCCAAATTTCGATCCCTCGAACCTTTCAACTGGTTCTTCTTCCCCTCCACAGCGACTCGATCGAAATCATCTCCCAGCTTCTTCACCAATCTCCTCTTCACAACCCTAATTTCTTCCTTGTGCTCACCAACATCATCCTCCTCAGCGTCAAACAATGGCATCAATCGCCGTCTCTTAGTTGCAATTGGCACTGGCGGTGGTGATACTGATTTCGACTTCTTCGACCGGCGAACAGCATCGTCTCTGAGATCTGAGTCAGATCTCTCTGGCGTCTCTACTTTCTTCTTCTTAGCAATCTTCTCACGCTCAGTTCGAAGCTTGTTGATATTGCCTTCGATTCGACCCTGA

Coding sequence (CDS)

ATGGCAGACAATAAGGAAGAAGACCCAGAAACAATCGCTCCTCAATGGTACTCTTTGATTATGAGAGTGATGAGCAAAAGAAGAACATGGGTGAAGCGCAATGCCTGGGTTTATGGGTTCATATGGATCATTGCTTTCTCTCCAGAAATGCTTCATAAACTTGGGATTTACAGATCTCTTTTCTTTGCTAATGGATGGAATACAGGGAATTCATCGATCCCATTGACTTCCAAATTTCGATCCCTCGAACCTTTCAACTGGTTCTTCTTCCCCTCCACAGCGACTCGATCGAAATCATCTCCCAGCTTCTTCACCAATCTCCTCTTCACAACCCTAATTTCTTCCTTGTGCTCACCAACATCATCCTCCTCAGCGTCAAACAATGGCATCAATCGCCGTCTCTTAGTTGCAATTGGCACTGGCGGTGGTGATACTGATTTCGACTTCTTCGACCGGCGAACAGCATCGTCTCTGAGATCTGAGTCAGATCTCTCTGGCGTCTCTACTTTCTTCTTCTTAGCAATCTTCTCACGCTCAGTTCGAAGCTTGTTGATATTGCCTTCGATTCGACCCTGA

Protein sequence

MADNKEEDPETIAPQWYSLIMRVMSKRRTWVKRNAWVYGFIWIIAFSPEMLHKLGIYRSLFFANGWNTGNSSIPLTSKFRSLEPFNWFFFPSTATRSKSSPSFFTNLLFTTLISSLCSPTSSSSASNNGINRRLLVAIGTGGGDTDFDFFDRRTASSLRSESDLSGVSTFFFLAIFSRSVRSLLILPSIRP
Homology
[Close]
BLAST of Cp4.1LG04g03060 vs. NCBI nr
Match: XP_022930709.1 (uncharacterized protein LOC111437107 isoform X1 [Cucurbita moschata])

HSP 1 Score: 70.1 bits (170), Expect = 2.71e-11
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVKRNAWVYGFI 41
          MADNKEEDPETIAPQWYSLIMRVMSKRRTWV     VY  +
Sbjct: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVCLFVLVYALL 41

[Close]
BLAST of Cp4.1LG04g03060 vs. NCBI nr
Match: XP_023531926.1 (uncharacterized protein LOC111794046 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 2.76e-11
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVKRNAWVYGFI 41
          MADNKEEDPETIAPQWYSLIMRVMSKRRTWV     VY  +
Sbjct: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVCLFVLVYALL 41

[Close]
BLAST of Cp4.1LG04g03060 vs. NCBI nr
Match: KAG7022922.1 (hypothetical protein SDJN02_16658, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.1 bits (170), Expect = 2.76e-11
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVKRNAWVYGFI 41
          MADNKEEDPETIAPQWYSLIMRVMSKRRTWV     VY  +
Sbjct: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVCLFVLVYALL 41

[Close]
BLAST of Cp4.1LG04g03060 vs. NCBI nr
Match: XP_022988973.1 (uncharacterized protein LOC111486173 [Cucurbita maxima])

HSP 1 Score: 70.1 bits (170), Expect = 2.82e-11
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVKRNAWVYGFI 41
          MADNKEEDPETIAPQWYSLIMRVMSKRRTWV     VY  +
Sbjct: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVCLFVLVYALL 41

[Close]
BLAST of Cp4.1LG04g03060 vs. NCBI nr
Match: KAG6589222.1 (hypothetical protein SDJN03_17787, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 1.23e-10
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVKRNAWVYGFI 41
          MADNKEEDPETIAPQWYSLIMRVMSKRRTWV     VY  +
Sbjct: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVCLFVLVYALL 41

[Close]
BLAST of Cp4.1LG04g03060 vs. ExPASy TrEMBL
Match: A0A6J1ES94 (uncharacterized protein LOC111437107 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437107 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.31e-11
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVKRNAWVYGFI 41
          MADNKEEDPETIAPQWYSLIMRVMSKRRTWV     VY  +
Sbjct: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVCLFVLVYALL 41

[Close]
BLAST of Cp4.1LG04g03060 vs. ExPASy TrEMBL
Match: A0A6J1JNW4 (uncharacterized protein LOC111486173 OS=Cucurbita maxima OX=3661 GN=LOC111486173 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.37e-11
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVKRNAWVYGFI 41
          MADNKEEDPETIAPQWYSLIMRVMSKRRTWV     VY  +
Sbjct: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVCLFVLVYALL 41

[Close]
BLAST of Cp4.1LG04g03060 vs. ExPASy TrEMBL
Match: A0A6J1D2X1 (uncharacterized protein LOC111016811 OS=Momordica charantia OX=3673 GN=LOC111016811 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.37e-07
Identity = 29/41 (70.73%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1  MADNKEEDPETIAPQWYSLIMRVMSKRRTWVKRNAWVYGFI 41
          MADNKEEDPET  P +YSL MRVMSKRRTWV     VY  I
Sbjct: 1  MADNKEEDPETAPPPFYSLFMRVMSKRRTWVCLFVLVYALI 41

[Close]
BLAST of Cp4.1LG04g03060 vs. ExPASy TrEMBL
Match: A0A5A7SLG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003370 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.43e-06
Identity = 30/46 (65.22%), Postives = 31/46 (67.39%), Query Frame = 0 

Query: 1  MADNKEEDPETIAPQW-----YSLIMRVMSKRRTWVKRNAWVYGFI 41
          MADNKEEDPET  PQ      YSLIMRVMSKRRTWV     VY  +
Sbjct: 1  MADNKEEDPETAPPQQAIPKSYSLIMRVMSKRRTWVCLFVLVYALL 46

[Close]
BLAST of Cp4.1LG04g03060 vs. ExPASy TrEMBL
Match: A0A1S3C0S4 (uncharacterized protein LOC103495508 OS=Cucumis melo OX=3656 GN=LOC103495508 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.43e-06
Identity = 30/46 (65.22%), Postives = 31/46 (67.39%), Query Frame = 0 

Query: 1  MADNKEEDPETIAPQW-----YSLIMRVMSKRRTWVKRNAWVYGFI 41
          MADNKEEDPET  PQ      YSLIMRVMSKRRTWV     VY  +
Sbjct: 1  MADNKEEDPETAPPQQAIPKSYSLIMRVMSKRRTWVCLFVLVYALL 46

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03060 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022930709.12.71e-1180.49uncharacterized protein LOC111437107 isoform X1 [Cucurbita moschata][more]
XP_023531926.12.76e-1180.49uncharacterized protein LOC111794046 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG7022922.12.76e-1180.49hypothetical protein SDJN02_16658, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022988973.12.82e-1180.49uncharacterized protein LOC111486173 [Cucurbita maxima][more]
KAG6589222.11.23e-1080.49hypothetical protein SDJN03_17787, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG04g03060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ES941.31e-1180.49uncharacterized protein LOC111437107 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JNW41.37e-1180.49uncharacterized protein LOC111486173 OS=Cucurbita maxima OX=3661 GN=LOC111486173... [more]
A0A6J1D2X11.37e-0770.73uncharacterized protein LOC111016811 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A5A7SLG95.43e-0665.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C0S45.43e-0665.22uncharacterized protein LOC103495508 OS=Cucumis melo OX=3656 GN=LOC103495508 PE=... [more]
BLAST of Cp4.1LG04g03060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03060.1Cp4.1LG04g03060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane