Cp4.1LG04g03050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g03050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase RMA1H1-like
Location	Cp4.1LG04: 7410794 .. 7411486 (-)
RNA-Seq Expression	Cp4.1LG04g03050
Synteny	Cp4.1LG04g03050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATGGAGCAGTACTTTGAGGAGATTAGTTCATTTGGAGAAAACAAGTCTTCTGTGGAGAATTGGAAATTAGCTTTGGATGCCATGGCAGAAACTCAATGTGATTCCTCTGGGCTATTTGACTGTAACATATGCTTAGAGACTGTGAAAGATCCTGTTGTTACACTTTGTGGCCATCTCTTTTGCTGGCCCTGTATTTACAAATGGCTTCATTTTCAGGACAGCTCTACAGAAAAACAAGGCCAACGACTCCAGCAATGTCCGGTTTGTAAGGCGGAAGTTTCTGATGCTACACTAGTCCCGCTCTATGGCAAAGGTGAAACCCAAGATCCATTCGAAAGCAAGAATTCGCAGCTTGGAATCGTCGTCCCTCGTCGGCCTCAAGGACCTGCTTGCTTTGAGTCACCAAGGGCAACCTCTCACCCTTACCCTCACCCTGTTCTTCAATTCCAGCAAGGAAATTTATCAGATCAGTCGAACATTTACTATGCTGAAGGAGTATTCGGAGAAATGGTTTATGCGAGAATGTTCGGTGCGATAACGAATCTATATTCATATCCGAACTCGTATCCTCTTGTGTGGAGCAGTAGTCCTAGGATCAGAAGGCATATTTTGCAGACGGATGAATCACTCAACAGAATCTGTATCTTTCTTTTCTGTTGCTCAATTATCTGTCTTCTATTGTTCTGA

mRNA sequence

ATGGACATGGAGCAGTACTTTGAGGAGATTAGTTCATTTGGAGAAAACAAGTCTTCTGTGGAGAATTGGAAATTAGCTTTGGATGCCATGGCAGAAACTCAATGTGATTCCTCTGGGCTATTTGACTGTAACATATGCTTAGAGACTGTGAAAGATCCTGTTGTTACACTTTGTGGCCATCTCTTTTGCTGGCCCTGTATTTACAAATGGCTTCATTTTCAGGACAGCTCTACAGAAAAACAAGGCCAACGACTCCAGCAATGTCCGGTTTGTAAGGCGGAAGTTTCTGATGCTACACTAGTCCCGCTCTATGGCAAAGGTGAAACCCAAGATCCATTCGAAAGCAAGAATTCGCAGCTTGGAATCGTCGTCCCTCGTCGGCCTCAAGGACCTGCTTGCTTTGAGTCACCAAGGGCAACCTCTCACCCTTACCCTCACCCTGTTCTTCAATTCCAGCAAGGAAATTTATCAGATCAGTCGAACATTTACTATGCTGAAGGAGTATTCGGAGAAATGGTTTATGCGAGAATGTTCGGTGCGATAACGAATCTATATTCATATCCGAACTCGTATCCTCTTGTGTGGAGCAGTAGTCCTAGGATCAGAAGGCATATTTTGCAGACGGATGAATCACTCAACAGAATCTGTATCTTTCTTTTCTGTTGCTCAATTATCTGTCTTCTATTGTTCTGA

Coding sequence (CDS)

ATGGACATGGAGCAGTACTTTGAGGAGATTAGTTCATTTGGAGAAAACAAGTCTTCTGTGGAGAATTGGAAATTAGCTTTGGATGCCATGGCAGAAACTCAATGTGATTCCTCTGGGCTATTTGACTGTAACATATGCTTAGAGACTGTGAAAGATCCTGTTGTTACACTTTGTGGCCATCTCTTTTGCTGGCCCTGTATTTACAAATGGCTTCATTTTCAGGACAGCTCTACAGAAAAACAAGGCCAACGACTCCAGCAATGTCCGGTTTGTAAGGCGGAAGTTTCTGATGCTACACTAGTCCCGCTCTATGGCAAAGGTGAAACCCAAGATCCATTCGAAAGCAAGAATTCGCAGCTTGGAATCGTCGTCCCTCGTCGGCCTCAAGGACCTGCTTGCTTTGAGTCACCAAGGGCAACCTCTCACCCTTACCCTCACCCTGTTCTTCAATTCCAGCAAGGAAATTTATCAGATCAGTCGAACATTTACTATGCTGAAGGAGTATTCGGAGAAATGGTTTATGCGAGAATGTTCGGTGCGATAACGAATCTATATTCATATCCGAACTCGTATCCTCTTGTGTGGAGCAGTAGTCCTAGGATCAGAAGGCATATTTTGCAGACGGATGAATCACTCAACAGAATCTGTATCTTTCTTTTCTGTTGCTCAATTATCTGTCTTCTATTGTTCTGA

Protein sequence

MDMEQYFEEISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQLGIVVPRRPQGPACFESPRATSHPYPHPVLQFQQGNLSDQSNIYYAEGVFGEMVYARMFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF

Homology

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BLAST of Cp4.1LG04g03050 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-53
Identity = 116/257 (45.14%), Postives = 160/257 (62.26%), Query Frame = 0


Query: 1   MDMEQYFEEI-SSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCG 60
           M+ +   E++ ++F ++ + +  WK   D + E   + SG FDCNICL+ V +PV+TLCG
Sbjct: 1   MNQDMALEQLDTTFNKHDTPLGKWKSMNDEVEE---NISGGFDCNICLDCVHEPVITLCG 60

Query: 61  HLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGK-GETQDPFESKNS 120
           HL+CWPCIYKW++FQ  S+E   Q+  QCPVCKAEVS+ TL+PLYG+ G++  P E K  
Sbjct: 61  HLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAP 120

Query: 121 QLGIVVPRRPQGPAC---FESPRATSHPYPHPVLQ---FQQGNLSDQ--------SNIYY 180
            LGIV+P+RP  P C   F  P   S+  P  +LQ   +QQ + + Q        S+   
Sbjct: 121 NLGIVIPQRPPSPRCGGHFLLPTTDSN--PSQLLQRRGYQQQSQTRQPAYQGSYMSSPML 180

Query: 181 AEG----------VFGEMVYARMFG-AITNLYSYPNSYPLVWSSSPRIRRHILQTDESLN 231
           + G          + GE+ YAR+FG + T +Y+YPNSY L  SSSPR+RR + Q D SL 
Sbjct: 181 SPGGATANMLQHSMIGEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLG 240

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BLAST of Cp4.1LG04g03050 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.4e-44
Identity = 108/259 (41.70%), Postives = 145/259 (55.98%), Query Frame = 0


Query: 1   MDMEQYFEEISSFGENK-------SSVENWKLALDAMAETQCDSSGLFDCNICLETVKDP 60
           M ++Q FE+ +  GE          S +   + +   ++   DS+  FDCNICL++V++P
Sbjct: 1   MALDQSFEDAALLGELYGEGAFCFKSKKPEPITVSVPSDDTDDSN--FDCNICLDSVQEP 60

Query: 61  VVTLCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPF 120
           VVTLCGHLFCWPCI+KWL  Q  ST  + QR +QCPVCK++VS +TLVPLYG+G      
Sbjct: 61  VVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQE 120

Query: 121 ESKNSQLGIVVPRRPQGPAC-FESPRATSHPYPHPVLQFQQ--GNLSDQSNIYYAEGVF- 180
           E KNS     VP+RP GP    E P +   PY    L+  Q     S Q   Y   GV  
Sbjct: 121 EGKNS-----VPKRPVGPVYRLEMPNS---PYASTDLRLSQRVHFNSPQEGYYPVSGVMS 180

Query: 181 -----------------GEMVYARMFGA-ITNLYSYPNSYPLVWSSSPRIRRHILQTDES 231
                            GEMV  R+FG  + + ++YP++Y L  +S PR+RR I+Q D+S
Sbjct: 181 SNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKS 240

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BLAST of Cp4.1LG04g03050 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.0e-38
Identity = 93/223 (41.70%), Postives = 117/223 (52.47%), Query Frame = 0


Query: 34  QCDSSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKA 93
           Q + SG FDCNICL+T  DPVVTLCGHLFCWPCIYKWLH Q SS     Q    CPVCK+
Sbjct: 35  QANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVD-QHQNNCPVCKS 94

Query: 94  EVSDATLVPLYGKG--ETQDPFESKNSQ-LGIVVPRRPQGPACFESPRATSHPYPHPVLQ 153
            ++  +LVPLYG+G       F SK    L   +PRRP  P+   +P  TS    +P LQ
Sbjct: 95  NITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNP-ITSASSLNPSLQ 154

Query: 154 FQQ-----------------------GNLSDQSNIYYAEGVFGEMVYARMFGAITNLYSY 213
            Q                         N    S +Y   G+FG++VY R+FG  TN  + 
Sbjct: 155 HQTLSPSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTIAQ 214

Query: 214 PNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 231
           P              + ++Q ++SLNR+ IF  CC I+CLLLF
Sbjct: 215 PYQ-----------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

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BLAST of Cp4.1LG04g03050 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-33
Identity = 86/208 (41.35%), Postives = 116/208 (55.77%), Query Frame = 0


Query: 33  TQCDSSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQ-----RLQQ 92
           T  DS G FDCNICL+ V+DPVVTLCGHLFCWPCI+KW +  ++S ++  Q        +
Sbjct: 11  TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPK 70

Query: 93  CPVCKAEVSDATLVPLYGKGETQDPFESKNSQLGIVVPRRPQGPACFESPRATSHPYPHP 152
           CPVCK++VS+ATLVP+YG+G+       K  Q G  VP RP GP            Y   
Sbjct: 71  CPVCKSDVSEATLVPIYGRGQ-------KAPQSGSNVPSRPTGPV-----------YDLR 130

Query: 153 VLQFQQGNLSDQSNIYY----AEGVFGEMVYARMFG-AITNLYSYPNSYPLVWSSSPRIR 212
            +  + G    Q  +Y       GV  EMVY R+FG + +N+  Y +        + R R
Sbjct: 131 GVGQRLGEGESQRYMYRMPDPVMGVVCEMVYRRLFGESSSNMAPYRD-------MNVRSR 190

Query: 213 RHILQTDESLNRICIFLFCCSIICLLLF 231
           R  +Q +ESL+R+ +FL C   +CL LF
Sbjct: 191 RRAMQAEESLSRVYLFLLCFMFMCLFLF 193

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BLAST of Cp4.1LG04g03050 vs. ExPASy Swiss-Prot
Match: Q5ZIR9 (E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.9e-19
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 41  FDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATL 100
           F+CNICL+T KD V++LCGHLFCWPC+++WL  + +         Q CPVCKA +S   +
Sbjct: 39  FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNR--------QVCPVCKAGISRDKV 98

Query: 101 VPLYGKGET--QDPFESKNSQLGIVVPRRPQG 131
           +PLYG+G T  QDP E          P RPQG
Sbjct: 99  IPLYGRGSTGQQDPREK--------TPPRPQG 114

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BLAST of Cp4.1LG04g03050 vs. NCBI nr
Match: XP_023529344.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023529345.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023529346.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 481 bits (1238), Expect = 1.23e-171
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MDMEQYFEEISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60
           MDMEQYFEEISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH
Sbjct: 1   MDMEQYFEEISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120
           LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL
Sbjct: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120

Query: 121 GIVVPRRPQGPACFESPRATSHPYPHPVLQFQQGNLSDQSNIYYAEGVFGEMVYARMFGA 180
           GIVVPRRPQGPACFESPRATSHPYPHPVLQFQQGNLSDQSNIYYAEGVFGEMVYARMFGA
Sbjct: 121 GIVVPRRPQGPACFESPRATSHPYPHPVLQFQQGNLSDQSNIYYAEGVFGEMVYARMFGA 180

Query: 181 ITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230
           ITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF
Sbjct: 181 ITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230

[Close]

BLAST of Cp4.1LG04g03050 vs. NCBI nr
Match: KAG7022916.1 (E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 469 bits (1208), Expect = 4.98e-167
Identity = 226/232 (97.41%), Postives = 229/232 (98.71%), Query Frame = 0


Query: 1   MDMEQYFEEISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60
           MDMEQY+EEI+SFGENKSSVENWK ALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH
Sbjct: 1   MDMEQYYEEINSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120
           LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL
Sbjct: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120

Query: 121 GIVVPRRPQGPACFESPRATSHPYPHP--VLQFQQGNLSDQSNIYYAEGVFGEMVYARMF 180
           GIVVPRRPQGPACFESPRATSHP+PHP  VLQFQQGNLSDQSNIYYAEGVFGEMVYARMF
Sbjct: 121 GIVVPRRPQGPACFESPRATSHPHPHPHPVLQFQQGNLSDQSNIYYAEGVFGEMVYARMF 180

Query: 181 GAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230
           GAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF
Sbjct: 181 GAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 232

[Close]

BLAST of Cp4.1LG04g03050 vs. NCBI nr
Match: XP_022930752.1 (E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Cucurbita moschata] >XP_022930753.1 E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Cucurbita moschata] >XP_022930754.1 E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 469 bits (1206), Expect = 1.08e-166
Identity = 226/234 (96.58%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MDMEQYFEEISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60
           MDMEQY+EEI+SFGENKSSVENWK ALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH
Sbjct: 1   MDMEQYYEEINSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120
           LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL
Sbjct: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120

Query: 121 GIVVPRRPQGPACFESPRATSHPYPHP----VLQFQQGNLSDQSNIYYAEGVFGEMVYAR 180
           GIVVPRRPQGPACFESPRATSHP+PHP    VLQFQQGNLSDQSNIYYAEGVFGEMVYAR
Sbjct: 121 GIVVPRRPQGPACFESPRATSHPHPHPHPHPVLQFQQGNLSDQSNIYYAEGVFGEMVYAR 180

Query: 181 MFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230
           MFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF
Sbjct: 181 MFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 234

[Close]

BLAST of Cp4.1LG04g03050 vs. NCBI nr
Match: KAG6589216.1 (E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 469 bits (1208), Expect = 2.30e-166
Identity = 226/232 (97.41%), Postives = 229/232 (98.71%), Query Frame = 0


Query: 1   MDMEQYFEEISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60
           MDMEQY+EEI+SFGENKSSVENWK ALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH
Sbjct: 43  MDMEQYYEEINSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 102

Query: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120
           LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL
Sbjct: 103 LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 162

Query: 121 GIVVPRRPQGPACFESPRATSHPYPHP--VLQFQQGNLSDQSNIYYAEGVFGEMVYARMF 180
           GIVVPRRPQGPACFESPRATSHP+PHP  VLQFQQGNLSDQSNIYYAEGVFGEMVYARMF
Sbjct: 163 GIVVPRRPQGPACFESPRATSHPHPHPHPVLQFQQGNLSDQSNIYYAEGVFGEMVYARMF 222

Query: 181 GAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230
           GAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF
Sbjct: 223 GAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 274

[Close]

BLAST of Cp4.1LG04g03050 vs. NCBI nr
Match: XP_022988938.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022988939.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022988940.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima])

HSP 1 Score: 460 bits (1184), Expect = 1.83e-163
Identity = 223/230 (96.96%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 1   MDMEQYFEEISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60
           MDMEQYFEEI+SFGENKSSVENWK ALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH
Sbjct: 1   MDMEQYFEEINSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120
           LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL
Sbjct: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120

Query: 121 GIVVPRRPQGPACFESPRATSHPYPHPVLQFQQGNLSDQSNIYYAEGVFGEMVYARMFGA 180
           GIVVPRRPQGPACFESPRATSHP    VLQFQQGNLSDQSNIYYAEGVFGEMVYARMFGA
Sbjct: 121 GIVVPRRPQGPACFESPRATSHP----VLQFQQGNLSDQSNIYYAEGVFGEMVYARMFGA 180

Query: 181 ITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230
           ITNLY+YPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF
Sbjct: 181 ITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 226

[Close]

BLAST of Cp4.1LG04g03050 vs. ExPASy TrEMBL
Match: A0A6J1ERI0 (E3 ubiquitin-protein ligase RMA1H1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437136 PE=4 SV=1)

HSP 1 Score: 469 bits (1206), Expect = 5.24e-167
Identity = 226/234 (96.58%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MDMEQYFEEISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60
           MDMEQY+EEI+SFGENKSSVENWK ALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH
Sbjct: 1   MDMEQYYEEINSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120
           LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL
Sbjct: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120

Query: 121 GIVVPRRPQGPACFESPRATSHPYPHP----VLQFQQGNLSDQSNIYYAEGVFGEMVYAR 180
           GIVVPRRPQGPACFESPRATSHP+PHP    VLQFQQGNLSDQSNIYYAEGVFGEMVYAR
Sbjct: 121 GIVVPRRPQGPACFESPRATSHPHPHPHPHPVLQFQQGNLSDQSNIYYAEGVFGEMVYAR 180

Query: 181 MFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230
           MFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF
Sbjct: 181 MFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 234

[Close]

BLAST of Cp4.1LG04g03050 vs. ExPASy TrEMBL
Match: A0A6J1JKZ9 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111486145 PE=4 SV=1)

HSP 1 Score: 460 bits (1184), Expect = 8.86e-164
Identity = 223/230 (96.96%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 1   MDMEQYFEEISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60
           MDMEQYFEEI+SFGENKSSVENWK ALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH
Sbjct: 1   MDMEQYFEEINSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120
           LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL
Sbjct: 61  LFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQL 120

Query: 121 GIVVPRRPQGPACFESPRATSHPYPHPVLQFQQGNLSDQSNIYYAEGVFGEMVYARMFGA 180
           GIVVPRRPQGPACFESPRATSHP    VLQFQQGNLSDQSNIYYAEGVFGEMVYARMFGA
Sbjct: 121 GIVVPRRPQGPACFESPRATSHP----VLQFQQGNLSDQSNIYYAEGVFGEMVYARMFGA 180

Query: 181 ITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230
           ITNLY+YPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF
Sbjct: 181 ITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 226

[Close]

BLAST of Cp4.1LG04g03050 vs. ExPASy TrEMBL
Match: A0A1S3C1W7 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103495518 PE=4 SV=1)

HSP 1 Score: 402 bits (1033), Expect = 1.47e-140
Identity = 199/239 (83.26%), Postives = 213/239 (89.12%), Query Frame = 0


Query: 1   MDMEQYFEE----ISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVT 60
           M+MEQYFEE    I+SFGENKSS+ENWK  LDAMAET CD+SGLFDCNICLETVKDPVVT
Sbjct: 1   MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 60

Query: 61  LCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESK 120
           LCGHLFCWPCIYKW+HFQDSS EKQ +RL QCPVCKAEVSDATLVPLYGKGETQ+P ESK
Sbjct: 61  LCGHLFCWPCIYKWIHFQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGETQNPLESK 120

Query: 121 NSQLGIVVPRRPQGPACFESPRATSHPYPHPV-LQFQQGNL--SDQSNIYYAE--GVFGE 180
           N QLGIVVPRRPQGPACFESPR TSHP  H V  QF++G+   SDQSN+YYA+  G FGE
Sbjct: 121 NPQLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGSSDSSDQSNVYYAQVTGAFGE 180

Query: 181 MVYARMFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230
           +VYARM GAITNLY+YPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCC IICLLLF
Sbjct: 181 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCLIICLLLF 239

[Close]

BLAST of Cp4.1LG04g03050 vs. ExPASy TrEMBL
Match: A0A5A7SLT9 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003470 PE=4 SV=1)

HSP 1 Score: 402 bits (1033), Expect = 1.47e-140
Identity = 199/239 (83.26%), Postives = 213/239 (89.12%), Query Frame = 0


Query: 1   MDMEQYFEE----ISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVT 60
           M+MEQYFEE    I+SFGENKSS+ENWK  LDAMAET CD+SGLFDCNICLETVKDPVVT
Sbjct: 1   MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 60

Query: 61  LCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESK 120
           LCGHLFCWPCIYKW+HFQDSS EKQ +RL QCPVCKAEVSDATLVPLYGKGETQ+P ESK
Sbjct: 61  LCGHLFCWPCIYKWIHFQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGETQNPLESK 120

Query: 121 NSQLGIVVPRRPQGPACFESPRATSHPYPHPV-LQFQQGNL--SDQSNIYYAE--GVFGE 180
           N QLGIVVPRRPQGPACFESPR TSHP  H V  QF++G+   SDQSN+YYA+  G FGE
Sbjct: 121 NPQLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGSSDSSDQSNVYYAQVTGAFGE 180

Query: 181 MVYARMFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230
           +VYARM GAITNLY+YPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCC IICLLLF
Sbjct: 181 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCLIICLLLF 239

[Close]

BLAST of Cp4.1LG04g03050 vs. ExPASy TrEMBL
Match: A0A6J1D3G6 (E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111016683 PE=4 SV=1)

HSP 1 Score: 398 bits (1023), Expect = 3.97e-139
Identity = 199/237 (83.97%), Postives = 211/237 (89.03%), Query Frame = 0


Query: 1   MDMEQYFEE----ISSFGENKSSVENWKLALDAMAETQCDSSGLFDCNICLETVKDPVVT 60
           MDMEQYFEE    I++FGENKSS+ENWK  LDAMAET CD+SGLFDCNICLETVKDPVVT
Sbjct: 1   MDMEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVT 60

Query: 61  LCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESK 120
           LCGHLFCWPCIYKWLHFQDSSTEKQGQ+ QQCPVCKAEVSDATLVPLYGKGETQDPFESK
Sbjct: 61  LCGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESK 120

Query: 121 NSQLGIVVPRRPQGPACFESPRATSHPYPHPVLQFQQGNLSDQS-NIYYAE--GVFGEMV 180
           NSQLG+VVPRRPQGP C E+ R TSH  P    QF++GN SDQS N YYA+  GVFGEM+
Sbjct: 121 NSQLGVVVPRRPQGPGCSETSRPTSHSAP----QFRRGNSSDQSSNNYYAQMTGVFGEMI 180

Query: 181 YARMFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 230
           YARMFGAITN Y+YPNSYPLVWSSSPRIRRHIL TDESLNRICIFLFC SIICLLLF
Sbjct: 181 YARMFGAITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 233

[Close]

BLAST of Cp4.1LG04g03050 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 178.7 bits (452), Expect = 5.3e-45
Identity = 108/259 (41.70%), Postives = 145/259 (55.98%), Query Frame = 0


Query: 1   MDMEQYFEEISSFGENK-------SSVENWKLALDAMAETQCDSSGLFDCNICLETVKDP 60
           M ++Q FE+ +  GE          S +   + +   ++   DS+  FDCNICL++V++P
Sbjct: 1   MALDQSFEDAALLGELYGEGAFCFKSKKPEPITVSVPSDDTDDSN--FDCNICLDSVQEP 60

Query: 61  VVTLCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPF 120
           VVTLCGHLFCWPCI+KWL  Q  ST  + QR +QCPVCK++VS +TLVPLYG+G      
Sbjct: 61  VVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQE 120

Query: 121 ESKNSQLGIVVPRRPQGPAC-FESPRATSHPYPHPVLQFQQ--GNLSDQSNIYYAEGVF- 180
           E KNS     VP+RP GP    E P +   PY    L+  Q     S Q   Y   GV  
Sbjct: 121 EGKNS-----VPKRPVGPVYRLEMPNS---PYASTDLRLSQRVHFNSPQEGYYPVSGVMS 180

Query: 181 -----------------GEMVYARMFGA-ITNLYSYPNSYPLVWSSSPRIRRHILQTDES 231
                            GEMV  R+FG  + + ++YP++Y L  +S PR+RR I+Q D+S
Sbjct: 181 SNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKS 240

[Close]

BLAST of Cp4.1LG04g03050 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 178.7 bits (452), Expect = 5.3e-45
Identity = 108/259 (41.70%), Postives = 145/259 (55.98%), Query Frame = 0


Query: 1   MDMEQYFEEISSFGENK-------SSVENWKLALDAMAETQCDSSGLFDCNICLETVKDP 60
           M ++Q FE+ +  GE          S +   + +   ++   DS+  FDCNICL++V++P
Sbjct: 1   MALDQSFEDAALLGELYGEGAFCFKSKKPEPITVSVPSDDTDDSN--FDCNICLDSVQEP 60

Query: 61  VVTLCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPF 120
           VVTLCGHLFCWPCI+KWL  Q  ST  + QR +QCPVCK++VS +TLVPLYG+G      
Sbjct: 61  VVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQE 120

Query: 121 ESKNSQLGIVVPRRPQGPAC-FESPRATSHPYPHPVLQFQQ--GNLSDQSNIYYAEGVF- 180
           E KNS     VP+RP GP    E P +   PY    L+  Q     S Q   Y   GV  
Sbjct: 121 EGKNS-----VPKRPVGPVYRLEMPNS---PYASTDLRLSQRVHFNSPQEGYYPVSGVMS 180

Query: 181 -----------------GEMVYARMFGA-ITNLYSYPNSYPLVWSSSPRIRRHILQTDES 231
                            GEMV  R+FG  + + ++YP++Y L  +S PR+RR I+Q D+S
Sbjct: 181 SNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKS 240

[Close]

BLAST of Cp4.1LG04g03050 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 158.7 bits (400), Expect = 5.7e-39
Identity = 93/223 (41.70%), Postives = 117/223 (52.47%), Query Frame = 0


Query: 34  QCDSSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKA 93
           Q + SG FDCNICL+T  DPVVTLCGHLFCWPCIYKWLH Q SS     Q    CPVCK+
Sbjct: 35  QANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVD-QHQNNCPVCKS 94

Query: 94  EVSDATLVPLYGKG--ETQDPFESKNSQ-LGIVVPRRPQGPACFESPRATSHPYPHPVLQ 153
            ++  +LVPLYG+G       F SK    L   +PRRP  P+   +P  TS    +P LQ
Sbjct: 95  NITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNP-ITSASSLNPSLQ 154

Query: 154 FQQ-----------------------GNLSDQSNIYYAEGVFGEMVYARMFGAITNLYSY 213
            Q                         N    S +Y   G+FG++VY R+FG  TN  + 
Sbjct: 155 HQTLSPSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTIAQ 214

Query: 214 PNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 231
           P              + ++Q ++SLNR+ IF  CC I+CLLLF
Sbjct: 215 PYQ-----------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Cp4.1LG04g03050 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34
Identity = 86/208 (41.35%), Postives = 116/208 (55.77%), Query Frame = 0


Query: 33  TQCDSSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQ-----RLQQ 92
           T  DS G FDCNICL+ V+DPVVTLCGHLFCWPCI+KW +  ++S ++  Q        +
Sbjct: 11  TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPK 70

Query: 93  CPVCKAEVSDATLVPLYGKGETQDPFESKNSQLGIVVPRRPQGPACFESPRATSHPYPHP 152
           CPVCK++VS+ATLVP+YG+G+       K  Q G  VP RP GP            Y   
Sbjct: 71  CPVCKSDVSEATLVPIYGRGQ-------KAPQSGSNVPSRPTGPV-----------YDLR 130

Query: 153 VLQFQQGNLSDQSNIYY----AEGVFGEMVYARMFG-AITNLYSYPNSYPLVWSSSPRIR 212
            +  + G    Q  +Y       GV  EMVY R+FG + +N+  Y +        + R R
Sbjct: 131 GVGQRLGEGESQRYMYRMPDPVMGVVCEMVYRRLFGESSSNMAPYRD-------MNVRSR 190

Query: 213 RHILQTDESLNRICIFLFCCSIICLLLF 231
           R  +Q +ESL+R+ +FL C   +CL LF
Sbjct: 191 RRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Cp4.1LG04g03050 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 2.5e-26
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 25  LALDAMAETQCDSSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQR 84
           +A++ +   + D+S  F CNICLE  ++P+VTLCGHLFCWPC+YKWLH+   S       
Sbjct: 1   MAINTITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKS------- 60

Query: 85  LQQCPVCKAEVSDATLVPLYGKGE-TQDPFESKNSQLGIVVPRRP 129
              CPVCKA V + TLVPLYG G+ + DP    NS  G+ VP RP
Sbjct: 61  -NHCPVCKALVKEDTLVPLYGMGKPSSDPRSKLNS--GVTVPNRP 95

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g03050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	1.8e-53	45.14	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
O64425	7.4e-44	41.70	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
Q8GUK7	8.0e-38	41.70	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
P93030	1.6e-33	41.35	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q5ZIR9	4.9e-19	48.91	E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1	[more]

BLAST of Cp4.1LG04g03050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529344.1	1.23e-171	100.00	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_0235293...	[more]
KAG7022916.1	4.98e-167	97.41	E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022930752.1	1.08e-166	96.58	E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Cucurbita moschata] >XP_0229...	[more]
KAG6589216.1	2.30e-166	97.41	E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022988938.1	1.83e-163	96.96	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022988939.1 E3 ub...	[more]

BLAST of Cp4.1LG04g03050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERI0	5.24e-167	96.58	E3 ubiquitin-protein ligase RMA1H1-like isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JKZ9	8.86e-164	96.96	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111486...	[more]
A0A1S3C1W7	1.47e-140	83.26	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103495518 PE=4 ...	[more]
A0A5A7SLT9	1.47e-140	83.26	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1D3G6	3.97e-139	83.97	E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of Cp4.1LG04g03050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03510.1	5.3e-45	41.70	RING membrane-anchor 1	[more]
AT4G03510.2	5.3e-45	41.70	RING membrane-anchor 1	[more]
AT4G27470.1	5.7e-39	41.70	RING membrane-anchor 3	[more]
AT4G28270.1	1.1e-34	41.35	RING membrane-anchor 2	[more]
AT1G74990.1	2.5e-26	50.48	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 43..91 e-value: 1.1E-10 score: 51.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 43..92 score: 13.123657
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 26..105 e-value: 3.3E-18 score: 66.8
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 43..91 e-value: 1.4E-10 score: 40.9
None	No IPR available	PANTHER	PTHR12313:SF59	E3 UBIQUITIN-PROTEIN LIGASE RMA1	coord: 4..230
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 41..93 e-value: 5.92649E-24 score: 88.13
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 42..97
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 4..230
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 58..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g03050.1	Cp4.1LG04g03050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity